Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013411.1

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Reverse (-)

46957 .. 48951

Gene Structure 1995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013411.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgaaggccaagtcaactcaacttcagttgaccctaacaaggcccaagtccgttagccgtttcacttggaggcccagtcgccctctctcgattcctctcctgtcaggtttgtctaagatgtttacttcaaggaagaagattcacaaggataaggatgccgagccgaccgagtttgaagagtcggttgcgcaagcacttttcgacttggagaacactaaccaggagctgaaaagtgagctgaaggatctatatataaattcagcagttcaagttgatgttgctggaaacaggaaggctgttgttgtccatgtaccctatagactgaggaaggcttaccgcaagatccatgttcgtcttgtgagggagcttgagaagaagttcagcggaaaggatgttatcctgattgctacacgtaggatagtgaggcctccaaagaaaggttctgctgttcaacggccccgcactcgcacactaactgctgtccacgaggctatgttggaggatgttgtctctcctgctgagattgtcggaaagcgcaccagatatcgtcttgatgggtcaaagataatgaaggtgtttttggaccccaaggagcgaaacaacacagaatacaagctggagagcttctctgcagtttatcggaagctgtcgggcaaagatgttgtgtttgagtatcctattactgaggcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

230

Amino Acids

26.45

Weight (kDa)

10.15

Isoelectric Point (pI)

29.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	189
AciI	CCGC	3 cut(s)	337, 384, 460
AclWI	GGATC	2 cut(s)	252, 337
AcsI	RAATTY	1 cut(s)	256
AcuI	CTGAAG	2 cut(s)	8, 260
AfaI	GTAC	1 cut(s)	312
AfiI	CCNNNNNNNGG	2 cut(s)	39, 437
AflIII	ACRYGT	1 cut(s)	410
AgsI	TTSAA	4 cut(s)	129, 176, 269, 452
AjnI	CCWGG	1 cut(s)	219
AjuI	GAANNNNNNNTTGG	4 cut(s)	424, 456, 563, 595
AluBI	AGCT	6 cut(s)	226, 238, 367, 616, 624, 646
AluI	AGCT	6 cut(s)	226, 238, 367, 616, 624, 646
Alw26I	GTCTC	1 cut(s)	514
AlwI	GGATC	2 cut(s)	252, 337
AlwNI	CAGNNNCTG	1 cut(s)	226
AoxI	GGCC	6 cut(s)	6, 41, 71, 425, 455, 687
ApoI	RAATTY	1 cut(s)	256
Asp700I	GAANNNNTTC	1 cut(s)	377
AspLEI	GCGC	2 cut(s)	190, 537
AspS9I	GGNCC	4 cut(s)	42, 72, 456, 583
AvaII	GGWCC	1 cut(s)	583
BauI	CACGAG	1 cut(s)	485
BccI	CCATC	1 cut(s)	548
BceAI	ACGGC	2 cut(s)	42, 470
BciT130I	CCWGG	1 cut(s)	221
BciVI	GTATCC	1 cut(s)	684
BcoDI	GTCTC	1 cut(s)	514
BfaI	CTAG	1 cut(s)	691
BfmI	CTRYAG	2 cut(s)	316, 630
BfuI	GTATCC	1 cut(s)	684
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	583
BmgT120I	GGNCC	4 cut(s)	42, 72, 456, 583
BmiI	GGNNCC	2 cut(s)	458, 585
BmrFI	CCNGG	1 cut(s)	221
BmrI	ACTGGG	1 cut(s)	69
BmsI	GCATC	1 cut(s)	145
BmuI	ACTGGG	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	611, 643
BpmI	CTGGAG	1 cut(s)	638
BpuEI	CTTGAG	1 cut(s)	389
BsaAI	YACGTR	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	588
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 437
Bse1I	ACTGG	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	588
BseGI	GGATG	3 cut(s)	160, 397, 508
BseLI	CCNNNNNNNGG	2 cut(s)	39, 437
BseMII	CTCAG	3 cut(s)	314, 510, 675
BseNI	ACTGG	1 cut(s)	75
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	6 cut(s)	8, 43, 73, 427, 457, 689
BsiEI	CGRYCG	1 cut(s)	168
BslI	CCNNNNNNNGG	2 cut(s)	39, 437
BsmAI	GTCTC	1 cut(s)	514
BsnI	GGCC	6 cut(s)	8, 43, 73, 427, 457, 689
Bsp143I	GATC	2 cut(s)	244, 342
BspACI	CCGC	3 cut(s)	337, 384, 460
BspANI	GGCC	6 cut(s)	8, 43, 73, 427, 457, 689
BspCNI	CTCAG	3 cut(s)	315, 511, 676
BspLI	GGNNCC	2 cut(s)	458, 585
BspMAI	CTGCAG	1 cut(s)	634
BspPI	GGATC	2 cut(s)	252, 337
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	588
BssMI	GATC	2 cut(s)	244, 342
BssSI	CACGAG	1 cut(s)	485
BssT1I	CCWWGG	1 cut(s)	588
Bst2BI	CACGAG	1 cut(s)	485
Bst2UI	CCWGG	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	171
BstBAI	YACGTR	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	4 cut(s)	114, 323, 519, 684
BstF5I	GGATG	3 cut(s)	160, 397, 508
BstHHI	GCGC	2 cut(s)	190, 537
BstKTI	GATC	2 cut(s)	247, 345
BstMAI	GTCTC	1 cut(s)	514
BstMBI	GATC	2 cut(s)	244, 342
BstMCI	CGRYCG	1 cut(s)	168
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	2 cut(s)	316, 630
BstX2I	RGATCY	2 cut(s)	244, 342
BstYI	RGATCY	2 cut(s)	244, 342
BsuI	GTATCC	1 cut(s)	684
BsuRI	GGCC	6 cut(s)	8, 43, 73, 427, 457, 689
BtsCI	GGATG	3 cut(s)	160, 397, 508
Cac8I	GCNNGC	1 cut(s)	192
CaiI	CAGNNNCTG	1 cut(s)	226
CfoI	GCGC	2 cut(s)	190, 537
Cfr13I	GGNCC	4 cut(s)	42, 72, 456, 583
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	2 cut(s)	308, 347
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	4 cut(s)	114, 323, 519, 684
DpnI	GATC	2 cut(s)	246, 344
DpnII	GATC	2 cut(s)	244, 342
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	588
Eco147I	AGGCCT	2 cut(s)	427, 689
Eco32I	GATATC	1 cut(s)	545
Eco47I	GGWCC	1 cut(s)	583
Eco57I	CTGAAG	2 cut(s)	8, 260
EcoRII	CCWGG	1 cut(s)	219
EcoRV	GATATC	1 cut(s)	545
EcoT14I	CCWWGG	1 cut(s)	588
ErhI	CCWWGG	1 cut(s)	588
FaeI	CATG	2 cut(s)	311, 350
FaiI	YATR	7 cut(s)	250, 252, 254, 309, 318, 348, 494
FatI	CATG	2 cut(s)	307, 346
FauI	CCCGC	1 cut(s)	467
FokI	GGATG	3 cut(s)	167, 404, 515
FspBI	CTAG	1 cut(s)	691
FspI	TGCGCA	1 cut(s)	189
GlaI	GCGC	2 cut(s)	189, 536
GsuI	CTGGAG	1 cut(s)	638
HaeIII	GGCC	6 cut(s)	8, 43, 73, 427, 457, 689
HhaI	GCGC	2 cut(s)	190, 537
Hin1II	CATG	2 cut(s)	311, 350
Hin6I	GCGC	2 cut(s)	188, 535
HinP1I	GCGC	2 cut(s)	188, 535
HincII	GTYRAC	2 cut(s)	15, 30
HindII	GTYRAC	2 cut(s)	15, 30
HinfI	GANTC	3 cut(s)	91, 139, 179
Hpy166II	GTNNAC	4 cut(s)	15, 30, 123, 484
Hpy188I	TCNGA	2 cut(s)	530, 642
Hpy188III	TCNNGA	3 cut(s)	88, 400, 551
Hpy8I	GTNNAC	4 cut(s)	15, 30, 123, 484
HpyAV	CCTTC	4 cut(s)	235, 286, 322, 565
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	1 cut(s)	632
HpyF3I	CTNAG	4 cut(s)	114, 323, 519, 684
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	2 cut(s)	311, 350
HspAI	GCGC	2 cut(s)	188, 535
Kzo9I	GATC	2 cut(s)	244, 342
LmnI	GCTCC	3 cut(s)	223, 364, 592
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	691
MaeII	ACGT	1 cut(s)	412
MalI	GATC	2 cut(s)	246, 344
MboI	GATC	2 cut(s)	244, 342
MboII	GAAGA	4 cut(s)	145, 148, 188, 385
MflI	RGATCY	2 cut(s)	244, 342
MluCI	AATT	1 cut(s)	256
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	2 cut(s)	477, 508
MroXI	GAANNNNTTC	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	384
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
NdeII	GATC	2 cut(s)	244, 342
NlaIII	CATG	2 cut(s)	311, 350
NlaIV	GGNNCC	2 cut(s)	458, 585
NmeAIII	GCCGAG	1 cut(s)	184
NsbI	TGCGCA	1 cut(s)	189
PceI	AGGCCT	2 cut(s)	427, 689
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	2 cut(s)	91, 139
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Ppu21I	YACGTR	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	2 cut(s)	458, 585
PspPI	GGNCC	4 cut(s)	42, 72, 456, 583
PstI	CTGCAG	1 cut(s)	634
PstNI	CAGNNNCTG	1 cut(s)	226
PsuI	RGATCY	2 cut(s)	244, 342
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
Sau3AI	GATC	2 cut(s)	244, 342
Sau96I	GGNCC	4 cut(s)	42, 72, 456, 583
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	221
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	2 cut(s)	316, 630
SinI	GGWCC	1 cut(s)	583
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	256
SseBI	AGGCCT	2 cut(s)	427, 689
SsiI	CCGC	3 cut(s)	337, 384, 460
SspMI	CTAG	1 cut(s)	691
StuI	AGGCCT	2 cut(s)	427, 689
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	588
TaiI	ACGT	1 cut(s)	415
TaqI	TCGA	2 cut(s)	89, 201
TaqII	GACCGA	1 cut(s)	182
TasI	AATT	1 cut(s)	256
TfiI	GAWTC	2 cut(s)	91, 139
TspDTI	ATGAA	2 cut(s)	17, 584
TspGWI	ACGGA	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	583
XapI	RAATTY	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.