Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Forward (+)

5268421 .. 5270199

Gene Structure 1779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTTCTCCGCTCAGAACAAGATCAAGAAGGACAAGAATGCTGAGCCAACAGAATGCGAGGAGCAAGTTGCTCAGGCTTTGTTTGATTTGGAGAACACTAACCAGGAGTTGAAAAGCGAGTTGAAAGATCTCTACATCAACCAAGCTGTTCACATGGATATCTCTGGAAACCGCAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGCAAGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGGATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGTGCTGCTGTTCAGAGGCCACGTAACAGAACTCTTACCTCAGTTCATGAAGCTATGCTTGAAGATGTTGCTTTCCCCGCTGAGATTGTTGGAAAGCGTACTCGCTACCGTCTTGATGGTTCCAAGATCATGAAGGTCTTTTTGGATGCCAAGGAAAAGAACAACACAGAGTACAAGCTCGAGACTATGGTCGGTGTGTACCGTAAACTTACTGGCAAAGATGTTGTTTTTGAGTACCCAGTCGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 ko03010 ko04714 ko04723 ko04923 map00561 map01100 map03010 map04714 map04723 map04923

Pfam Domains

Protein Families

Ribosomal_S7e

Protein Analysis

190

Amino Acids

22.06

Weight (kDa)

9.75

Isoelectric Point (pI)

23.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7e	PF01251	7 - 186	1.6e-78	Ribosomal protein S7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	11
AciI	CCGC	4 cut(s)	9, 172, 220, 399
AclWI	GGATC	1 cut(s)	308
AfaI	GTAC	4 cut(s)	421, 494, 521, 557
AfiI	CCNNNNNNNGG	3 cut(s)	297, 319, 320
AgsI	TTSAA	3 cut(s)	112, 124, 383
AjnI	CCWGG	1 cut(s)	102
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	7 cut(s)	146, 179, 215, 250, 374, 499, 569
AluI	AGCT	7 cut(s)	146, 179, 215, 250, 374, 499, 569
Alw26I	GTCTC	2 cut(s)	242, 497
AlwI	GGATC	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	500
AoxI	GGCC	1 cut(s)	338
ApeKI	GCWGC	1 cut(s)	326
Asp700I	GAANNNNTTC	2 cut(s)	215, 260
AvaI	CYCGRG	1 cut(s)	500
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	1 cut(s)	431
BciT130I	CCWGG	1 cut(s)	104
BcoDI	GTCTC	2 cut(s)	242, 497
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	1 cut(s)	327
BlpI	GCTNAGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	104
BmeT110I	CYCGRG	1 cut(s)	500
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	1 cut(s)	104
BmrI	ACTGGG	1 cut(s)	554
BmsI	GCATC	1 cut(s)	457
BmuI	ACTGGG	1 cut(s)	554
BoxI	GACNNNNGTC	1 cut(s)	509
Bpu10I	CCTNAGC	1 cut(s)	72
Bpu1102I	GCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	3 cut(s)	297, 319, 320
Bse1I	ACTGG	2 cut(s)	538, 560
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	3 cut(s)	229, 280, 472
BseLI	CCNNNNNNNGG	3 cut(s)	297, 319, 320
BseMII	CTCAG	5 cut(s)	26, 33, 86, 375, 393
BseNI	ACTGG	2 cut(s)	538, 560
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	313
BshFI	GGCC	1 cut(s)	340
BsiHKCI	CYCGRG	1 cut(s)	500
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	3 cut(s)	297, 319, 320
BsmAI	GTCTC	2 cut(s)	242, 497
BsmBI	CGTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	294
BsmI	GAATGC	2 cut(s)	43, 59
BsnI	GGCC	1 cut(s)	340
BsoBI	CYCGRG	1 cut(s)	500
Bsp143I	GATC	4 cut(s)	21, 127, 300, 447
Bsp1720I	GCTNAGC	1 cut(s)	42
BspACI	CCGC	4 cut(s)	9, 172, 220, 399
BspANI	GGCC	1 cut(s)	340
BspCNI	CTCAG	5 cut(s)	25, 34, 85, 374, 394
BspHI	TCATGA	2 cut(s)	367, 450
BspLI	GGNNCC	1 cut(s)	442
BspPI	GGATC	1 cut(s)	308
BsrBI	CCGCTC	1 cut(s)	11
BsrI	ACTGG	2 cut(s)	538, 560
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	4 cut(s)	21, 127, 300, 447
BssT1I	CCWWGG	1 cut(s)	471
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	431, 524
BstBAI	YACGTR	1 cut(s)	344
BstDEI	CTNAG	5 cut(s)	12, 42, 72, 361, 402
BstF5I	GGATG	3 cut(s)	229, 280, 472
BstKTI	GATC	4 cut(s)	24, 130, 303, 450
BstMAI	GTCTC	2 cut(s)	242, 497
BstMBI	GATC	4 cut(s)	21, 127, 300, 447
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	1 cut(s)	104
BstPAI	GACNNNNGTC	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	313
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	340
BtsCI	GGATG	3 cut(s)	229, 280, 472
BtsIMutI	CAGTG	1 cut(s)	271
CciI	TCATGA	2 cut(s)	367, 450
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	4 cut(s)	420, 493, 520, 556
CviAII	CATG	4 cut(s)	154, 304, 368, 451
CviQI	GTAC	4 cut(s)	420, 493, 520, 556
DdeI	CTNAG	5 cut(s)	12, 42, 72, 361, 402
DpnI	GATC	4 cut(s)	23, 129, 302, 449
DpnII	GATC	4 cut(s)	21, 127, 300, 447
Eco130I	CCWWGG	1 cut(s)	471
Eco32I	GATATC	1 cut(s)	160
Eco88I	CYCGRG	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	102
EcoRV	GATATC	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
Esp3I	CGTCTC	1 cut(s)	242
FaeI	CATG	4 cut(s)	157, 307, 371, 454
FaiI	YATR	6 cut(s)	155, 305, 369, 377, 452, 509
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	4 cut(s)	153, 303, 367, 450
FauI	CCCGC	1 cut(s)	406
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	3 cut(s)	216, 287, 479
Fsp4HI	GCNGC	1 cut(s)	327
GluI	GCNGC	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	340
HgaI	GACGC	1 cut(s)	296
Hin1II	CATG	4 cut(s)	157, 307, 371, 454
HindIII	AAGCTT	2 cut(s)	213, 567
HinfI	GANTC	1 cut(s)	226
Hpy166II	GTNNAC	3 cut(s)	151, 520, 527
Hpy188I	TCNGA	4 cut(s)	15, 203, 245, 336
Hpy188III	TCNNGA	6 cut(s)	25, 165, 368, 434, 451, 502
Hpy8I	GTNNAC	3 cut(s)	151, 520, 527
HpyAV	CCTTC	4 cut(s)	22, 291, 313, 448
HpyCH4III	ACNGT	2 cut(s)	431, 524
HpyCH4IV	ACGT	2 cut(s)	192, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	5 cut(s)	12, 42, 72, 361, 402
HpySE526I	ACGT	2 cut(s)	192, 343
Hsp92II	CATG	4 cut(s)	157, 307, 371, 454
Kzo9I	GATC	4 cut(s)	21, 127, 300, 447
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	5 cut(s)	59, 89, 116, 150, 519
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	457
MaeII	ACGT	2 cut(s)	192, 343
MaeIII	GTNAC	2 cut(s)	286, 344
MalI	GATC	4 cut(s)	23, 129, 302, 449
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	4 cut(s)	21, 127, 300, 447
MboII	GAAGA	2 cut(s)	268, 395
MflI	RGATCY	1 cut(s)	127
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	4 cut(s)	52, 201, 330, 370
MroXI	GAANNNNTTC	2 cut(s)	215, 260
MspA1I	CMGCKG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	104
Mva1269I	GAATGC	2 cut(s)	43, 59
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeII	GATC	4 cut(s)	21, 127, 300, 447
NlaIII	CATG	4 cut(s)	157, 307, 371, 454
NlaIV	GGNNCC	1 cut(s)	442
PaeR7I	CTCGAG	1 cut(s)	500
PagI	TCATGA	2 cut(s)	367, 450
PctI	GAATGC	2 cut(s)	43, 59
PdmI	GAANNNNTTC	2 cut(s)	215, 260
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	328
Ppu21I	YACGTR	1 cut(s)	344
PshAI	GACNNNNGTC	1 cut(s)	509
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	4 cut(s)	421, 494, 521, 557
RsaNI	GTAC	4 cut(s)	420, 493, 520, 556
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	4 cut(s)	21, 127, 300, 447
ScrFI	CCNGG	1 cut(s)	104
SfaNI	GCATC	1 cut(s)	457
Sfr274I	CTCGAG	1 cut(s)	500
SlaI	CTCGAG	1 cut(s)	500
SmlI	CTYRAG	2 cut(s)	251, 500
SmoI	CTYRAG	2 cut(s)	251, 500
SsiI	CCGC	4 cut(s)	9, 172, 220, 399
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	431, 524
TaiI	ACGT	2 cut(s)	195, 346
TaqI	TCGA	2 cut(s)	501, 564
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	1 cut(s)	226
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	4 cut(s)	218, 356, 384, 467
TspRI	CASTG	1 cut(s)	271
XhoI	CTCGAG	1 cut(s)	500
XmnI	GAANNNNTTC	2 cut(s)	215, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.