Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001094

Physical Location & Seq

Genomic Coordinates Forward (+)

34954167 .. 34956025

Gene Structure 1859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1217200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTCCACTAATACTAAAACCCTAAGTAGCAATTATTCCGGCGAAGACGATAGTGAGCTTAGGAGAGGGCAATGGATTCTTGAAGAAGACAGTCTTCTTATTCAGTACATAGAGCGCCATGGCGAAGGCCAGTGGAACTTGCTTGCCAAACGTTCAGGATTAAGGAGAACTGGCAAAAGTTGCAGATTGAGATGGTTGAATTATCTGAAACCCGACGTTAAGCGAGGCAATCTTAGTCCTGAAGAACAGCTCTTGATTCTTGACCTCCACTCAAAAATGGGCAATAGGTGGTCGAAAATCGCACGGTATTTACCGGGAAGAACAGACAATGAAATCAAGAACTATTGGAGAACAAGGGTACACAAACAAGCCCGGCATCTCAACATCGACACGAAAAGCAGGGAGTTTCAAAATATGATAAGGTGCTATTGGATGCCTAGGTTGAAGCAGAAGATAGGACGAGAAACCTCGATTTCTTCAGCTGTGTTAAACCAAAATCCTACGATTTCTCAGCCTCGAGAAAACAACACTTTCCAACATTTTACGGCAACAATATCCCCGCCACCACAAATCCTTGTGCAGGAAGAAATTAATATGAGTGGAACAATGTACAATTTGGATGTCGAAAAGCAAAACACAGAGGCAGATTACTGCAGAAGTTCGTTCATTTTCCCCTCAGAACCAATGGACATGTCGAAGACTGCGCAATTTCCGGAATGCCCTCCTTTCTATTGTGGTGACAACAATGGCTACGACATGGAATCCTTCAATCTGCAGGAATCTGTGTCAGCAGACTCAGCACCAAATTTCCCTGGAAATTCCGCCGGCGATTGCTACGTGGCAGAAAACAACTGGTTTGACAGTGATTTTTTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

293

Amino Acids

33.93

Weight (kDa)

6.25

Isoelectric Point (pI)

68.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	22 - 69	2.1e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	25 - 82	3.3e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	75 - 118	5.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	79 - 126	1.8e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48830 AT1G48830 AT3G02560 AT3G02560 AT3G02560 AT5G16130
fragaria_vesca	FvH4_4g09890 FvH4_5g11920 FvH4_5g11930
malus_domestica	MD01G1071000.v1.1 MD06G1217200.v1.1 MD06G1217300.v1.1 MD13G1256100.v1.1 MD14G1227500.v1.1 MD14G1227600.v1.1
prunus_persica	Prupe.1G086800_v2.0.a1 Prupe.1G086800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.3G016800_v2.0.a1 Prupe.5G222400_v2.0.a1 Prupe.5G222500_v2.0.a1 Prupe.5G222500_v2.0.a1
pyrus_communis	pycom06g19360 pycom13g22690 pycom14g18900
rosa_chinensis	RchiOBHm_Chr4g0402641 RchiOBHm_Chr7g0185561 RchiOBHm_Chr7g0185571
rosa_laevigata	RLG00000004898 RLG00000004899 RLG00000009059
rosa_multiflora	Rmu_co8253147.1_g000001 Rmu_sc0009850.1_g000017 Rmu_sc0010190.1_g000009 Rmu_sc0013411.1_g000010 Rmu_sc0022885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268800 Rroxscaffold_3G00268810 Rroxscaffold_5G00347360
rosa_rugosa	Rorug04G0037200 Rorug04G0037300 Rorug06G0470200 Rorug06G0470200
rosa_samantha	Rh4AG114900 Rh4BG107200 Rh4CG121600 Rh4DG107100 Rh7AG072200 Rh7AG072300 Rh7BG075500 Rh7BG075700 Rh7CG075600 Rh7CG075800 Rh7DG075300 Rh7DG075400
rosa_wichuraiana	Rw4G009160 Rw7G006280 Rw7G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	705
AccIII	TCCGGA	1 cut(s)	712
AciI	CCGC	2 cut(s)	560, 822
AclI	AACGTT	1 cut(s)	151
AcsI	RAATTY	2 cut(s)	805, 817
AcuI	CTGAAG	2 cut(s)	261, 462
AfaI	GTAC	3 cut(s)	107, 360, 611
AfiI	CCNNNNNNNGG	1 cut(s)	580
AflIII	ACRYGT	1 cut(s)	690
AgsI	TTSAA	5 cut(s)	83, 199, 410, 445, 769
AjnI	CCWGG	1 cut(s)	811
AluBI	AGCT	3 cut(s)	58, 250, 482
AluI	AGCT	3 cut(s)	58, 250, 482
Ama87I	CYCGRG	1 cut(s)	516
Aor13HI	TCCGGA	1 cut(s)	712
AoxI	GGCC	1 cut(s)	127
ApoI	RAATTY	2 cut(s)	805, 817
AseI	ATTAAT	1 cut(s)	591
AspA2I	CCTAGG	1 cut(s)	437
AspLEI	GCGC	2 cut(s)	117, 706
AsuC2I	CCSGG	2 cut(s)	315, 373
AsuHPI	GGTGA	1 cut(s)	749
AvaI	CYCGRG	1 cut(s)	516
AvrII	CCTAGG	1 cut(s)	437
BbsI	GAAGAC	4 cut(s)	51, 86, 93, 704
BccI	CCATC	1 cut(s)	186
BceAI	ACGGC	1 cut(s)	561
BciT130I	CCWGG	1 cut(s)	813
BcnI	CCSGG	2 cut(s)	315, 373
BfaI	CTAG	1 cut(s)	438
BfmI	CTRYAG	2 cut(s)	652, 773
BfoI	RGCGCY	1 cut(s)	118
BlnI	CCTAGG	1 cut(s)	437
Bme1390I	CCNGG	3 cut(s)	315, 373, 813
BmeT110I	CYCGRG	1 cut(s)	516
BmrFI	CCNGG	3 cut(s)	315, 373, 813
BmsI	GCATC	2 cut(s)	385, 423
BpiI	GAAGAC	4 cut(s)	51, 86, 93, 704
Bpu10I	CCTNAGC	1 cut(s)	59
BpuMI	CCSGG	2 cut(s)	315, 373
BsaAI	YACGTR	1 cut(s)	838
BsaJI	CCNNGG	3 cut(s)	118, 437, 811
BsaWI	WCCGGW	1 cut(s)	712
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse118I	RCCGGY	1 cut(s)	824
Bse1I	ACTGG	3 cut(s)	130, 175, 857
Bse3DI	GCAATG	1 cut(s)	77
BseAI	TCCGGA	1 cut(s)	712
BseBI	CCWGG	1 cut(s)	813
BseDI	CCNNGG	3 cut(s)	118, 437, 811
BseGI	GGATG	2 cut(s)	438, 625
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMI	GCAATG	1 cut(s)	77
BseMII	CTCAG	3 cut(s)	524, 690, 810
BseNI	ACTGG	3 cut(s)	130, 175, 857
BsgI	GTGCAG	1 cut(s)	599
BshFI	GGCC	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	516
BsiSI	CCGG	5 cut(s)	39, 314, 373, 713, 825
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmI	GAATGC	1 cut(s)	722
BsnI	GGCC	1 cut(s)	129
BsoBI	CYCGRG	1 cut(s)	516
Bsp13I	TCCGGA	1 cut(s)	712
Bsp1407I	TGTACA	1 cut(s)	609
Bsp19I	CCATGG	1 cut(s)	118
BspACI	CCGC	2 cut(s)	560, 822
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	3 cut(s)	523, 689, 809
BspEI	TCCGGA	1 cut(s)	712
BspMAI	CTGCAG	2 cut(s)	656, 777
BsrDI	GCAATG	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	824
BsrGI	TGTACA	1 cut(s)	609
BsrI	ACTGG	3 cut(s)	130, 175, 857
BssAI	RCCGGY	1 cut(s)	824
BssECI	CCNNGG	3 cut(s)	118, 437, 811
BssT1I	CCWWGG	2 cut(s)	118, 437
Bst2UI	CCWGG	1 cut(s)	813
Bst4CI	ACNGT	3 cut(s)	92, 306, 863
BstAPI	GCANNNNNTGC	1 cut(s)	180
BstAUI	TGTACA	1 cut(s)	609
BstBAI	YACGTR	1 cut(s)	838
BstC8I	GCNNGC	2 cut(s)	144, 826
BstDEI	CTNAG	6 cut(s)	23, 59, 233, 510, 676, 796
BstDSI	CCRYGG	1 cut(s)	118
BstENI	CCTNNNNNAGG	1 cut(s)	578
BstF5I	GGATG	2 cut(s)	438, 625
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	2 cut(s)	117, 706
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 797
BstNI	CCWGG	1 cut(s)	813
BstNSI	RCATGY	1 cut(s)	694
BstSCI	CCNGG	3 cut(s)	313, 371, 811
BstSFI	CTRYAG	2 cut(s)	652, 773
BstV2I	GAAGAC	4 cut(s)	51, 86, 93, 704
BsuRI	GGCC	1 cut(s)	129
BtgI	CCRYGG	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	438, 625
BtsIMutI	CAGTG	2 cut(s)	137, 868
Cac8I	GCNNGC	2 cut(s)	144, 826
CfoI	GCGC	2 cut(s)	117, 706
Cfr10I	RCCGGY	1 cut(s)	824
Csp6I	GTAC	3 cut(s)	106, 359, 610
CviAII	CATG	4 cut(s)	119, 691, 757, 874
CviJI	RGCY	7 cut(s)	58, 129, 250, 371, 482, 514, 750
CviKI_1	RGCY	7 cut(s)	58, 129, 250, 371, 482, 514, 750
CviQI	GTAC	3 cut(s)	106, 359, 610
DdeI	CTNAG	6 cut(s)	23, 59, 233, 510, 676, 796
EciI	GGCGGA	1 cut(s)	811
Eco130I	CCWWGG	2 cut(s)	118, 437
Eco57I	CTGAAG	2 cut(s)	261, 462
Eco88I	CYCGRG	1 cut(s)	516
EcoNI	CCTNNNNNAGG	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	811
EcoT14I	CCWWGG	2 cut(s)	118, 437
ErhI	CCWWGG	2 cut(s)	118, 437
FaeI	CATG	4 cut(s)	122, 694, 760, 877
FaiI	YATR	7 cut(s)	110, 120, 416, 596, 692, 758, 875
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FatI	CATG	4 cut(s)	118, 690, 756, 873
FauI	CCCGC	1 cut(s)	567
FokI	GGATG	2 cut(s)	445, 632
FspBI	CTAG	1 cut(s)	438
FspI	TGCGCA	1 cut(s)	705
GlaI	GCGC	2 cut(s)	116, 705
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	5 cut(s)	39, 314, 373, 713, 825
HhaI	GCGC	2 cut(s)	117, 706
Hin1II	CATG	4 cut(s)	122, 694, 760, 877
Hin6I	GCGC	2 cut(s)	115, 704
HinP1I	GCGC	2 cut(s)	115, 704
HinfI	GANTC	5 cut(s)	76, 256, 761, 779, 794
HpaII	CCGG	5 cut(s)	39, 314, 373, 713, 825
HphI	GGTGA	1 cut(s)	749
Hpy166II	GTNNAC	2 cut(s)	6, 361
Hpy188I	TCNGA	2 cut(s)	207, 679
Hpy188III	TCNNGA	8 cut(s)	80, 156, 239, 253, 260, 337, 518, 713
Hpy8I	GTNNAC	2 cut(s)	6, 361
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	119, 775
HpyCH4III	ACNGT	3 cut(s)	92, 306, 863
HpyCH4IV	ACGT	3 cut(s)	151, 216, 837
HpyCH4V	TGCA	4 cut(s)	183, 580, 654, 775
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 797
HpyF3I	CTNAG	6 cut(s)	23, 59, 233, 510, 676, 796
HpySE526I	ACGT	3 cut(s)	151, 216, 837
Hsp92II	CATG	4 cut(s)	122, 694, 760, 877
HspAI	GCGC	2 cut(s)	115, 704
Kpn2I	TCCGGA	1 cut(s)	712
KroI	GCCGGC	1 cut(s)	824
KroNI	GCCGGC	1 cut(s)	826
LweI	GCATC	2 cut(s)	385, 423
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	3 cut(s)	151, 216, 837
MaeIII	GTNAC	1 cut(s)	737
MluCI	AATT	7 cut(s)	31, 199, 588, 613, 707, 805, 817
MlyI	GAGTC	1 cut(s)	788
MmeI	TCCRAC	1 cut(s)	559
MnlI	CCTC	8 cut(s)	59, 218, 275, 478, 525, 634, 685, 732
MreI	CGCCGGCG	1 cut(s)	824
MroI	TCCGGA	1 cut(s)	712
MroNI	GCCGGC	1 cut(s)	824
MseI	TTAA	4 cut(s)	161, 219, 488, 591
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	5 cut(s)	39, 314, 373, 713, 825
MspR9I	CCNGG	3 cut(s)	315, 373, 813
Mva1269I	GAATGC	1 cut(s)	722
MvaI	CCWGG	1 cut(s)	813
MwoI	GCNNNNNNNGC	2 cut(s)	180, 797
NaeI	GCCGGC	1 cut(s)	826
NciI	CCSGG	2 cut(s)	315, 373
NcoI	CCATGG	1 cut(s)	118
NgoMIV	GCCGGC	1 cut(s)	824
NlaIII	CATG	4 cut(s)	122, 694, 760, 877
NmuCI	GTSAC	1 cut(s)	737
NsbI	TGCGCA	1 cut(s)	705
NspI	RCATGY	1 cut(s)	694
PaeR7I	CTCGAG	1 cut(s)	516
PciI	ACATGT	1 cut(s)	690
PctI	GAATGC	1 cut(s)	722
PdiI	GCCGGC	1 cut(s)	826
PfeI	GAWTC	4 cut(s)	76, 256, 761, 779
PleI	GAGTC	1 cut(s)	788
PpsI	GAGTC	1 cut(s)	788
Ppu21I	YACGTR	1 cut(s)	838
PscI	ACATGT	1 cut(s)	690
PshBI	ATTAAT	1 cut(s)	591
Psp1406I	AACGTT	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	811
PspGI	CCWGG	1 cut(s)	811
PstI	CTGCAG	2 cut(s)	656, 777
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	3 cut(s)	107, 360, 611
RsaNI	GTAC	3 cut(s)	106, 359, 610
SaqAI	TTAA	4 cut(s)	161, 219, 488, 591
SchI	GAGTC	1 cut(s)	788
ScrFI	CCNGG	3 cut(s)	315, 373, 813
SfaNI	GCATC	2 cut(s)	385, 423
SfcI	CTRYAG	2 cut(s)	652, 773
Sfr274I	CTCGAG	1 cut(s)	516
SgrAI	CRCCGGYG	1 cut(s)	824
SlaI	CTCGAG	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
Sse9I	AATT	7 cut(s)	31, 199, 588, 613, 707, 805, 817
SsiI	CCGC	2 cut(s)	560, 822
SspMI	CTAG	1 cut(s)	438
StyD4I	CCNGG	3 cut(s)	313, 371, 811
StyI	CCWWGG	2 cut(s)	118, 437
TaaI	ACNGT	3 cut(s)	92, 306, 863
TaiI	ACGT	3 cut(s)	154, 219, 840
TaqI	TCGA	6 cut(s)	293, 387, 470, 517, 624, 695
TasI	AATT	7 cut(s)	31, 199, 588, 613, 707, 805, 817
TatI	WGTACW	2 cut(s)	105, 609
TfiI	GAWTC	4 cut(s)	76, 256, 761, 779
Tru1I	TTAA	4 cut(s)	161, 219, 488, 591
Tru9I	TTAA	4 cut(s)	161, 219, 488, 591
TscAI	CASTG	2 cut(s)	137, 868
TseFI	GTSAC	1 cut(s)	737
Tsp45I	GTSAC	1 cut(s)	737
TspDTI	ATGAA	3 cut(s)	345, 655, 862
TspRI	CASTG	2 cut(s)	137, 868
VspI	ATTAAT	1 cut(s)	591
XagI	CCTNNNNNAGG	1 cut(s)	578
XapI	RAATTY	2 cut(s)	805, 817
XceI	RCATGY	1 cut(s)	694
XhoI	CTCGAG	1 cut(s)	516
XmaJI	CCTAGG	1 cut(s)	437
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.