Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014387

Physical Location & Seq

Genomic Coordinates Reverse (-)

6460685 .. 6466017

Gene Structure 5333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G086700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGGCAGCAGTCCAGCACCATTTTCAGATATTGGAAAGAGAGCAAAAGATCTCTTGATCAAAGATTACAACTTTGACCAGAAGTTTACTCTGTCGGTGGTTGGCTCCACTGGGCTGGGACTTACAGCTAATGGTTTGAAGAGGGATCAAATTTTTGTTGGTGACATAAATACCCTGTACAAGAGTGGAAACACTATCGTAGATGTGAAAGTTGATACTTATTCTAATGTGTCTACAAAAGTGACCGTGAGTGATATCTTGCCGAGCACGAAAGCAGTGTTTAGCTTCAGAATACCAGATCACAAATCTGGCAAGCTGGACGTGCAGTACCTTCATCCTCATGCAGCTTTTGATTCCAGTATAGGCCTGAACCCAACCCCTCTTTTAGAACTGTCGGCAACAATTGGAAGTAAGGATCTTAGTTTGGGTGGTGAAATTGGATTTGACACAGCATCCTCTTTGTTGACCAAATACAATGCTGGGATCAGCTTTAACAAGCCAGATTTCTCTGCAGCGCTTTTGCTGACGGACAAAGGACAGACATTGAAGGCATCTTACATTCATGCTGTTGACTCCTGCAATGGAACTGCAGTTGCTGCCGAACTGACCCATAGATTTTCCACCTTCGAGAACAGCTTTACCCTTGGCAGCTCTCATGTAATTGATCCATTAACTGTGGTAAAAACACGATTCTCTGATAATGGGAAAGCTGGTGTGCTATGGCAACGTGAATGGAGACCAAAGTCATTAGTAACTGTCTCAGCTGAGTATGACTCAAAGGCACTTAATGCATCCCCAAAGATAGGTCTTGCTCTCGCGCTCAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008308 GO:0008509 GO:0009605 GO:0009607 GO:0009617 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071944 GO:0098656

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

277

Amino Acids

29.56

Weight (kDa)

8.78

Isoelectric Point (pI)

18.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57490
fragaria_vesca	FvH4_4g09860 FvH4_4g09860
malus_domestica	MD00G1064400.v1.1
prunus_persica	Prupe.1G086700_v2.0.a1 Prupe.1G086700_v2.0.a1
pyrus_communis	pycom16g21790
rosa_chinensis	RchiOBHm_Chr4g0402631
rosa_laevigata	RLG00000009060
rosa_multiflora	Rmu_sc0013411.1_g000011
rosa_roxburghii	Rroxscaffold_5G00347340
rosa_rugosa	Rorug04G0037200
rosa_samantha	Rh4AG114800 Rh4BG107100 Rh4CG121500 Rh4DG107000
rosa_wichuraiana	Rw4G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	233
AccII	CGCG	1 cut(s)	818
AclWI	GGATC	4 cut(s)	153, 423, 491, 659
AcsI	RAATTY	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	271
AfaI	GTAC	2 cut(s)	179, 329
AfeI	AGCGCT	1 cut(s)	516
AfiI	CCNNNNNNNGG	1 cut(s)	803
AgsI	TTSAA	2 cut(s)	139, 547
AjiI	CACGTC	1 cut(s)	322
AluBI	AGCT	9 cut(s)	128, 285, 316, 347, 489, 636, 651, 710, 764
AluI	AGCT	9 cut(s)	128, 285, 316, 347, 489, 636, 651, 710, 764
Alw21I	GWGCWC	1 cut(s)	269
Alw26I	GTCTC	2 cut(s)	730, 763
AlwI	GGATC	4 cut(s)	153, 423, 491, 659
AlwNI	CAGNNNCTG	1 cut(s)	596
Aor51HI	AGCGCT	1 cut(s)	516
AoxI	GGCC	1 cut(s)	364
ApeKI	GCWGC	5 cut(s)	6, 344, 512, 596, 648
ApoI	RAATTY	1 cut(s)	150
AspLEI	GCGC	2 cut(s)	517, 820
AsuHPI	GGTGA	2 cut(s)	173, 443
BarI	GAAGNNNNNNTAC	2 cut(s)	539, 571
Bbv12I	GWGCWC	1 cut(s)	269
BbvI	GCAGC	5 cut(s)	18, 356, 524, 583, 660
BclI	TGATCA	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	730, 763
BfmI	CTRYAG	2 cut(s)	510, 588
BfoI	RGCGCY	1 cut(s)	518
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	5 cut(s)	7, 345, 513, 597, 649
BlsI	GCNGC	5 cut(s)	8, 346, 514, 598, 650
BmgBI	CACGTC	1 cut(s)	322
BmiI	GGNNCC	1 cut(s)	106
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	3 cut(s)	461, 560, 800
BmuI	ACTGGG	1 cut(s)	120
BoxI	GACNNNNGTC	1 cut(s)	742
BplI	GAGNNNNNCTC	2 cut(s)	758, 790
BpuEI	CTTGAG	1 cut(s)	806
BsaI	GGTCTC	1 cut(s)	730
BsaJI	CCNNGG	1 cut(s)	643
Bsc4I	CCNNNNNNNGG	1 cut(s)	803
Bse1I	ACTGG	2 cut(s)	115, 357
Bse3DI	GCAATG	1 cut(s)	586
BseDI	CCNNGG	1 cut(s)	643
BseGI	GGATG	3 cut(s)	334, 452, 791
BseLI	CCNNNNNNNGG	1 cut(s)	803
BseMI	GCAATG	1 cut(s)	586
BseMII	CTCAG	2 cut(s)	756, 774
BseNI	ACTGG	2 cut(s)	115, 357
BseXI	GCAGC	5 cut(s)	18, 356, 524, 583, 660
BseYI	CCCAGC	2 cut(s)	115, 479
BsgI	GTGCAG	1 cut(s)	344
Bsh1236I	CGCG	1 cut(s)	818
BshFI	GGCC	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	803
BsmAI	GTCTC	2 cut(s)	730, 763
BsmFI	GGGAC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	366
Bso31I	GGTCTC	1 cut(s)	730
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	7 cut(s)	49, 57, 145, 298, 415, 483, 664
BspANI	GGCC	1 cut(s)	366
BspCNI	CTCAG	2 cut(s)	757, 773
BspFNI	CGCG	1 cut(s)	818
BspLI	GGNNCC	1 cut(s)	106
BspMAI	CTGCAG	2 cut(s)	514, 592
BspPI	GGATC	4 cut(s)	153, 423, 491, 659
BspTNI	GGTCTC	1 cut(s)	730
BsrDI	GCAATG	1 cut(s)	586
BsrGI	TGTACA	1 cut(s)	177
BsrI	ACTGG	2 cut(s)	115, 357
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	7 cut(s)	49, 57, 145, 298, 415, 483, 664
BssT1I	CCWWGG	1 cut(s)	643
Bst4CI	ACNGT	4 cut(s)	247, 393, 676, 757
Bst6I	CTCTTC	1 cut(s)	134
BstAPI	GCANNNNNTGC	2 cut(s)	596, 788
BstAUI	TGTACA	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	314
BstDEI	CTNAG	3 cut(s)	419, 760, 765
BstF5I	GGATG	3 cut(s)	334, 452, 791
BstFNI	CGCG	1 cut(s)	818
BstH2I	RGCGCY	1 cut(s)	518
BstHHI	GCGC	2 cut(s)	517, 820
BstKTI	GATC	7 cut(s)	52, 60, 148, 301, 418, 486, 667
BstMAI	GTCTC	2 cut(s)	730, 763
BstMBI	GATC	7 cut(s)	49, 57, 145, 298, 415, 483, 664
BstMWI	GCNNNNNNNGC	3 cut(s)	322, 596, 788
BstPAI	GACNNNNGTC	1 cut(s)	742
BstSFI	CTRYAG	2 cut(s)	510, 588
BstUI	CGCG	1 cut(s)	818
BstV1I	GCAGC	5 cut(s)	18, 356, 524, 583, 660
BstX2I	RGATCY	2 cut(s)	49, 415
BstXI	CCANNNNNNTGG	1 cut(s)	115
BstYI	RGATCY	2 cut(s)	49, 415
BsuRI	GGCC	1 cut(s)	366
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	3 cut(s)	334, 452, 791
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	2 cut(s)	108, 282
Cac8I	GCNNGC	1 cut(s)	314
CaiI	CAGNNNCTG	1 cut(s)	596
CfoI	GCGC	2 cut(s)	517, 820
Csp6I	GTAC	2 cut(s)	178, 328
CviAII	CATG	3 cut(s)	341, 563, 656
CviQI	GTAC	2 cut(s)	178, 328
DdeI	CTNAG	3 cut(s)	419, 760, 765
DpnI	GATC	7 cut(s)	51, 59, 147, 300, 417, 485, 666
DpnII	GATC	7 cut(s)	49, 57, 145, 298, 415, 483, 664
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	643
Eco147I	AGGCCT	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	730
Eco32I	GATATC	1 cut(s)	256
Eco47III	AGCGCT	1 cut(s)	516
Eco57I	CTGAAG	1 cut(s)	271
EcoRV	GATATC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	643
EcoT22I	ATGCAT	1 cut(s)	793
ErhI	CCWWGG	1 cut(s)	643
FaeI	CATG	3 cut(s)	344, 566, 659
FaiI	YATR	8 cut(s)	167, 342, 362, 564, 612, 657, 721, 771
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	3 cut(s)	340, 562, 655
FbaI	TGATCA	1 cut(s)	57
FblI	GTMKAC	1 cut(s)	233
Fnu4HI	GCNGC	5 cut(s)	7, 345, 513, 597, 649
FokI	GGATG	3 cut(s)	321, 439, 778
Fsp4HI	GCNGC	5 cut(s)	7, 345, 513, 597, 649
GlaI	GCGC	2 cut(s)	516, 819
GluI	GCNGC	5 cut(s)	7, 345, 513, 597, 649
GsaI	CCCAGC	2 cut(s)	119, 483
HaeII	RGCGCY	1 cut(s)	518
HaeIII	GGCC	1 cut(s)	366
HhaI	GCGC	2 cut(s)	517, 820
Hin1II	CATG	3 cut(s)	344, 566, 659
Hin6I	GCGC	2 cut(s)	515, 818
HinP1I	GCGC	2 cut(s)	515, 818
HincII	GTYRAC	2 cut(s)	465, 571
HindII	GTYRAC	2 cut(s)	465, 571
HinfI	GANTC	4 cut(s)	353, 572, 690, 773
HphI	GGTGA	2 cut(s)	173, 443
Hpy166II	GTNNAC	4 cut(s)	87, 234, 465, 571
Hpy188I	TCNGA	3 cut(s)	28, 290, 697
Hpy188III	TCNNGA	2 cut(s)	55, 628
Hpy8I	GTNNAC	4 cut(s)	87, 234, 465, 571
HpyAV	CCTTC	3 cut(s)	341, 541, 634
HpyCH4III	ACNGT	4 cut(s)	247, 393, 676, 757
HpyCH4IV	ACGT	2 cut(s)	321, 727
HpyCH4V	TGCA	6 cut(s)	325, 344, 512, 579, 590, 791
HpyF10VI	GCNNNNNNNGC	3 cut(s)	322, 596, 788
HpyF3I	CTNAG	3 cut(s)	419, 760, 765
HpySE526I	ACGT	2 cut(s)	321, 727
Hsp92II	CATG	3 cut(s)	344, 566, 659
HspAI	GCGC	2 cut(s)	515, 818
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	7 cut(s)	49, 57, 145, 298, 415, 483, 664
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	5 cut(s)	18, 356, 524, 583, 660
LweI	GCATC	3 cut(s)	461, 560, 800
MaeII	ACGT	2 cut(s)	321, 727
MaeIII	GTNAC	3 cut(s)	161, 241, 751
MalI	GATC	7 cut(s)	51, 59, 147, 300, 417, 485, 666
MboI	GATC	7 cut(s)	49, 57, 145, 298, 415, 483, 664
MboII	GAAGA	1 cut(s)	151
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	2 cut(s)	49, 415
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	4 cut(s)	150, 402, 435, 660
MlyI	GAGTC	2 cut(s)	566, 767
MnlI	CCTC	4 cut(s)	135, 348, 390, 466
Mph1103I	ATGCAT	1 cut(s)	793
MseI	TTAA	3 cut(s)	492, 671, 786
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	764
MunI	CAATTG	1 cut(s)	402
MvnI	CGCG	1 cut(s)	818
MwoI	GCNNNNNNNGC	3 cut(s)	322, 596, 788
NdeII	GATC	7 cut(s)	49, 57, 145, 298, 415, 483, 664
NlaIII	CATG	3 cut(s)	344, 566, 659
NlaIV	GGNNCC	1 cut(s)	106
NmeAIII	GCCGAG	1 cut(s)	288
NmuCI	GTSAC	2 cut(s)	161, 241
NsiI	ATGCAT	1 cut(s)	793
PceI	AGGCCT	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	353, 690
PkrI	GCNGC	5 cut(s)	8, 346, 514, 598, 650
PleI	GAGTC	2 cut(s)	566, 767
PpsI	GAGTC	2 cut(s)	566, 767
PshAI	GACNNNNGTC	1 cut(s)	742
PspFI	CCCAGC	2 cut(s)	115, 479
PspN4I	GGNNCC	1 cut(s)	106
PstI	CTGCAG	2 cut(s)	514, 592
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	2 cut(s)	49, 415
PvuII	CAGCTG	1 cut(s)	764
RsaI	GTAC	2 cut(s)	179, 329
RsaNI	GTAC	2 cut(s)	178, 328
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	3 cut(s)	492, 671, 786
SatI	GCNGC	5 cut(s)	7, 345, 513, 597, 649
Sau3AI	GATC	7 cut(s)	49, 57, 145, 298, 415, 483, 664
SchI	GAGTC	2 cut(s)	566, 767
SduI	GDGCHC	1 cut(s)	269
SfaNI	GCATC	3 cut(s)	461, 560, 800
SfcI	CTRYAG	2 cut(s)	510, 588
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
Sse9I	AATT	4 cut(s)	150, 402, 435, 660
SseBI	AGGCCT	1 cut(s)	366
StuI	AGGCCT	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	643
TaaI	ACNGT	4 cut(s)	247, 393, 676, 757
TaiI	ACGT	2 cut(s)	324, 730
TaqI	TCGA	1 cut(s)	627
TasI	AATT	4 cut(s)	150, 402, 435, 660
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	2 cut(s)	353, 690
Tru1I	TTAA	3 cut(s)	492, 671, 786
Tru9I	TTAA	3 cut(s)	492, 671, 786
TscAI	CASTG	2 cut(s)	115, 282
TseFI	GTSAC	2 cut(s)	161, 241
TseI	GCWGC	5 cut(s)	6, 344, 512, 596, 648
Tsp45I	GTSAC	2 cut(s)	161, 241
TspDTI	ATGAA	2 cut(s)	323, 551
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	2 cut(s)	115, 282
XapI	RAATTY	1 cut(s)	150
XmiI	GTMKAC	1 cut(s)	233
Zsp2I	ATGCAT	1 cut(s)	793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.