AT5G57740

Ankyrin repeat

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
23394585 .. 23397650
3066 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G57740.1

Sequence Viewer

Length: 1527 bp
ATGAGGTTTCTAAGCCTCGTCGGAAACTCATTCGGTTGTTCTGCGTCCGGCGAACGCTTAGTATCAGCGGCCAGAGACGGTGATTTACAGGAAGCTAAAGCTCTCTTAGATTACAATCCAAGACTCGCTCGTTACTCTACTTTTGGCGTTCGTAACTCTCCTCTTCATTACTCCGCCGCTCAAGGCCACCACGAGATAGTTTCTCTGTTGGTGGAATCAGGAGTTGATATTAATCTCCGGAACTACCGTGGACAGACGGCTTTGATGCAAGCTTGTCAACATGGTCATTGGGAGGTTGTTTTGATTCTGATTCTTTTTGGTGCTAATATTCACAGATCAGATTACTTAAATGGTGGTACTGCTTTACACCTTGCGGCTTTAAATGGTCACCCTCGGTGTATCAGGATCTTGCTTTCGGAGTATATACCAAGTGTTCCTAATTGCTGGAGCCTTTTAAAGAATAAGAAAACTTCAGTTGCTGGATTCGATTCTAGTGTTCTTCACGAAGTGATCAACAGAGCAGCAGATGGTGGAATCACACCTCTTCATGTGGCGGCTTTGAACGGACATATAGAGACGGTGCAGTTACTCTTGGATTTGGGAGCTTCGGTTACTCAGGTCACTGTGGAAGATGGAACTACTATAGATCTTATAGGTGCTGGGAGTACAGCTCTCCATTATGCTTCATGTGGTGGAAACACGCAGTGTTGCCAGCTTTTGATCAGTAAGGGTGCTTGTTTAGCTGCCGTAAACTCCAACGGATGGACACCAATGATGGTAGCTCGTTCATGGCACCGAAACTGGCTGGAAGAAATCCTGAACCCAACAACAGAACAACCACAACTCCATTTGCCAAATGTCCCCTCTCCTTTCCTCTGCCTTCCTTTAATGAGCATTGTCAATATTGCTCAAGAATGCGGCTGGCGAGAAAACGATTGTCTGACTCCATGTCGTGACCCTTGTGCCGTTTGTTTGGAAAGAAAATGCACTGTGGCAGCAGATGGATGTGCTCATGAGTTCTGCACAAACTGTGCATTATACCTAAGCACCACAAGCATAACATCGTCAAAGACCTCAAACGTCACACCAGGCTCTGTCCCGTGTCCTCTCTGTCGCAATGGCATTGTATCTTTCACCAAACTTCCCCATACAACGGCAACAACAAGAACATCAACATCATCAAGAACAAGCATCTCCTTGTCCTTCTGCACTTGCTCCTCTGATGTCTTAGACACAGCTCTCCTAACTAACCCTCACTACAGTTGTAAACCGGTTGTGTCAAGAACGGGTTCTCGAACTCCACAATCCGCTAGATCATCAGCGTTTCGGTCTCTTAGCTGCCGCCGGTTTCCTCCAAGTCTCTGCCTTGGTGGCTCAGATGTTGATGAACCTCGAAGCCGGTTAATTGGTGGATCATATTCAAGATCCGGTGTAGGATTCAGGCGATCAACGTCGCAGGTTGAAGGGAAACGTTCTTGGTTTTCTGCACTTAACCATTGTGTTACAACCGGTGGAAGTGCTTGCTAA

Protein Analysis

508

Amino Acids

54.59

Weight (kDa)

8.42

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 21 - 114 2.3e-15 Ankyrin repeats (3 copies)
Ank PF00023 52 - 81 7.2e-07 Ankyrin repeat
Ank_4 PF13637 55 - 104 1.9e-09 Ankyrin repeats (many copies)
Ank_5 PF13857 70 - 111 1.8e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 83 - 140 8.6e-11 Ankyrin repeats (3 copies)
Ank_4 PF13637 94 - 138 2.1e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 108 - 206 8.4e-12 Ankyrin repeats (3 copies)
Ank PF00023 178 - 207 2.5e-07 Ankyrin repeat
Ank_2 PF12796 220 - 268 1.2e-08 Ankyrin repeats (3 copies)
Ank PF00023 221 - 251 3.8e-06 Ankyrin repeat
RING_XB3-XBAT31 PF24921 321 - 377 3.3e-16 E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1447
AccB1I GGYRCC 1 cut(s) 792
AccB7I CCANNNNNTGG 1 cut(s) 762
AccBSI CCGCTC 1 cut(s) 179
AccIII TCCGGA 1 cut(s) 237
AciI CCGC 8 cut(s) 68, 174, 177, 374, 554, 918, 1308, 1342
AclI AACGTT 1 cut(s) 1471
AclWI GGATC 3 cut(s) 413, 1419, 1420
AcoI YGGCCR 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 456
AdeI CACNNNGTG 2 cut(s) 508, 705
AfaI GTAC 2 cut(s) 358, 667
AfiI CCNNNNNNNGG 2 cut(s) 762, 1153
AgeI ACCGGT 2 cut(s) 1270, 1508
AgsI TTSAA 3 cut(s) 562, 1422, 1463
AhdI GACNNNNNGTC 1 cut(s) 948
AjnI CCWGG 1 cut(s) 1087
Alw21I GWGCWC 1 cut(s) 1012
Alw26I GTCTC 4 cut(s) 69, 569, 1335, 1364
AlwI GGATC 3 cut(s) 413, 1419, 1420
AlwNI CAGNNNCTG 2 cut(s) 479, 1094
Aor13HI TCCGGA 1 cut(s) 237
AoxI GGCC 2 cut(s) 69, 184
ApeKI GCWGC 4 cut(s) 521, 743, 995, 1338
AseI ATTAAT 1 cut(s) 231
AsiGI ACCGGT 2 cut(s) 1270, 1508
Asp700I GAANNNNTTC 1 cut(s) 1288
AsuHPI GGTGA 3 cut(s) 92, 380, 1126
BanI GGYRCC 1 cut(s) 792
BauI CACGAG 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 1012
BbvI GCAGC 4 cut(s) 533, 730, 1007, 1325
BccI CCATC 5 cut(s) 521, 626, 756, 769, 995
BceAI ACGGC 4 cut(s) 273, 731, 950, 1170
BciT130I CCWGG 1 cut(s) 1089
BclI TGATCA 2 cut(s) 510, 720
BcoDI GTCTC 4 cut(s) 69, 569, 1335, 1364
BfaI CTAG 2 cut(s) 492, 1311
BfmI CTRYAG 2 cut(s) 642, 1258
BfuAI ACCTGC 1 cut(s) 1447
BglI GCCNNNNNGGC 1 cut(s) 1371
BglII AGATCT 1 cut(s) 646
Bme1390I CCNGG 1 cut(s) 1089
BmeRI GACNNNNNGTC 1 cut(s) 948
BmiI GGNNCC 2 cut(s) 449, 794
BmrFI CCNGG 1 cut(s) 1089
BmsI GCATC 2 cut(s) 255, 1200
BplI GAGNNNNNCTC 2 cut(s) 655, 687
BpmI CTGGAG 1 cut(s) 466
Bpu10I CCTNAGC 1 cut(s) 1043
BpuEI CTTGAG 2 cut(s) 165, 894
BsaBI GATNNNNATC 2 cut(s) 114, 231
BsaI GGTCTC 1 cut(s) 1335
BsaJI CCNNGG 3 cut(s) 247, 392, 1366
BsaWI WCCGGW 4 cut(s) 237, 1270, 1427, 1508
BsaXI ACNNNNNCTCC 4 cut(s) 594, 624, 828, 858
Bsc4I CCNNNNNNNGG 2 cut(s) 762, 1153
Bse118I RCCGGY 4 cut(s) 1270, 1344, 1398, 1508
Bse1I ACTGG 1 cut(s) 806
Bse3DI GCAATG 1 cut(s) 1123
Bse8I GATNNNNATC 2 cut(s) 114, 231
BseAI TCCGGA 1 cut(s) 237
BseBI CCWGG 1 cut(s) 1089
BseDI CCNNGG 3 cut(s) 247, 392, 1366
BseGI GGATG 2 cut(s) 767, 1010
BseJI GATNNNNATC 2 cut(s) 114, 231
BseLI CCNNNNNNNGG 2 cut(s) 762, 1153
BseMI GCAATG 1 cut(s) 1123
BseMII CTCAG 2 cut(s) 629, 1389
BseNI ACTGG 1 cut(s) 806
BseRI GAGGAG 2 cut(s) 150, 1207
BseXI GCAGC 4 cut(s) 533, 730, 1007, 1325
BseYI CCCAGC 1 cut(s) 659
BsgI GTGCAG 4 cut(s) 602, 1006, 1192, 1470
BshFI GGCC 2 cut(s) 71, 186
BshNI GGYRCC 1 cut(s) 792
BshTI ACCGGT 2 cut(s) 1270, 1508
BsiHKAI GWGCWC 1 cut(s) 1012
BsiSI CCGG 7 cut(s) 48, 238, 1271, 1345, 1399, 1428, 1509
BslFI GGGAC 2 cut(s) 845, 1082
BslI CCNNNNNNNGG 2 cut(s) 762, 1153
BsmAI GTCTC 4 cut(s) 69, 569, 1335, 1364
BsmBI CGTCTC 2 cut(s) 69, 569
BsmFI GGGAC 2 cut(s) 845, 1082
BsmI GAATGC 1 cut(s) 920
BsnI GGCC 2 cut(s) 71, 186
Bso31I GGTCTC 1 cut(s) 1335
Bsp1286I GDGCHC 1 cut(s) 1012
Bsp13I TCCGGA 1 cut(s) 237
Bsp143I GATC 9 cut(s) 335, 405, 510, 646, 720, 1313, 1412, 1424, 1445
BspACI CCGC 8 cut(s) 68, 174, 177, 374, 554, 918, 1308, 1342
BspANI GGCC 2 cut(s) 71, 186
BspCNI CTCAG 2 cut(s) 628, 1388
BspEI TCCGGA 1 cut(s) 237
BspHI TCATGA 1 cut(s) 1012
BspLI GGNNCC 2 cut(s) 449, 794
BspMI ACCTGC 1 cut(s) 1447
BspPI GGATC 3 cut(s) 413, 1419, 1420
BspT107I GGYRCC 1 cut(s) 792
BspTNI GGTCTC 1 cut(s) 1335
BsrBI CCGCTC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 1123
BsrFI RCCGGY 4 cut(s) 1270, 1344, 1398, 1508
BsrI ACTGG 1 cut(s) 806
BssAI RCCGGY 4 cut(s) 1270, 1344, 1398, 1508
BssECI CCNNGG 3 cut(s) 247, 392, 1366
BssMI GATC 9 cut(s) 335, 405, 510, 646, 720, 1313, 1412, 1424, 1445
BssSI CACGAG 1 cut(s) 191
BssT1I CCWWGG 1 cut(s) 1366
Bst2BI CACGAG 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 1089
Bst4CI ACNGT 7 cut(s) 80, 248, 580, 625, 991, 1031, 1262
Bst6I CTCTTC 2 cut(s) 168, 549
BstC8I GCNNGC 4 cut(s) 270, 713, 923, 1522
BstDEI CTNAG 8 cut(s) 11, 58, 106, 615, 1043, 1228, 1334, 1375
BstDSI CCRYGG 1 cut(s) 247
BstEII GGTNACC 1 cut(s) 386
BstF5I GGATG 2 cut(s) 767, 1010
BstKTI GATC 9 cut(s) 338, 408, 513, 649, 723, 1316, 1415, 1427, 1448
BstMAI GTCTC 4 cut(s) 69, 569, 1335, 1364
BstMBI GATC 9 cut(s) 335, 405, 510, 646, 720, 1313, 1412, 1424, 1445
BstMWI GCNNNNNNNGC 3 cut(s) 740, 1053, 1371
BstNI CCWGG 1 cut(s) 1089
BstPI GGTNACC 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 1087
BstSFI CTRYAG 2 cut(s) 642, 1258
BstV1I GCAGC 4 cut(s) 533, 730, 1007, 1325
BstX2I RGATCY 3 cut(s) 405, 646, 1424
BstYI RGATCY 3 cut(s) 405, 646, 1424
BsuRI GGCC 2 cut(s) 71, 186
BtgI CCRYGG 1 cut(s) 247
BtsCI GGATG 2 cut(s) 767, 1010
BtsI GCAGTG 1 cut(s) 710
BtsIMutI CAGTG 3 cut(s) 621, 710, 987
BveI ACCTGC 1 cut(s) 1447
Cac8I GCNNGC 4 cut(s) 270, 713, 923, 1522
CaiI CAGNNNCTG 2 cut(s) 479, 1094
CciI TCATGA 1 cut(s) 1012
Cfr10I RCCGGY 4 cut(s) 1270, 1344, 1398, 1508
CseI GACGC 1 cut(s) 33
Csp6I GTAC 2 cut(s) 357, 666
CspAI ACCGGT 2 cut(s) 1270, 1508
CviAII CATG 6 cut(s) 281, 548, 687, 789, 948, 1013
CviQI GTAC 2 cut(s) 357, 666
DdeI CTNAG 8 cut(s) 11, 58, 106, 615, 1043, 1228, 1334, 1375
DpnI GATC 9 cut(s) 337, 407, 512, 648, 722, 1315, 1414, 1426, 1447
DpnII GATC 9 cut(s) 335, 405, 510, 646, 720, 1313, 1412, 1424, 1445
DraI TTTAAA 2 cut(s) 381, 456
DraIII CACNNNGTG 2 cut(s) 508, 705
DriI GACNNNNNGTC 1 cut(s) 948
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 2 cut(s) 168, 549
Eam1105I GACNNNNNGTC 1 cut(s) 948
EarI CTCTTC 2 cut(s) 168, 549
EciI GGCGGA 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 1366
Eco31I GGTCTC 1 cut(s) 1335
Eco57I CTGAAG 1 cut(s) 456
Eco91I GGTNACC 1 cut(s) 386
EcoO65I GGTNACC 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 1087
EcoT14I CCWWGG 1 cut(s) 1366
ErhI CCWWGG 1 cut(s) 1366
Esp3I CGTCTC 2 cut(s) 69, 569
FaeI CATG 6 cut(s) 284, 551, 690, 792, 951, 1016
FaqI GGGAC 2 cut(s) 845, 1082
FatI CATG 6 cut(s) 280, 547, 686, 788, 947, 1012
FbaI TGATCA 2 cut(s) 510, 720
FokI GGATG 2 cut(s) 774, 1017
FspBI CTAG 2 cut(s) 492, 1311
GsaI CCCAGC 1 cut(s) 663
GsuI CTGGAG 1 cut(s) 466
HaeIII GGCC 2 cut(s) 71, 186
HapII CCGG 7 cut(s) 48, 238, 1271, 1345, 1399, 1428, 1509
HgaI GACGC 1 cut(s) 33
Hin1II CATG 6 cut(s) 284, 551, 690, 792, 951, 1016
HincII GTYRAC 1 cut(s) 278
HindII GTYRAC 1 cut(s) 278
HindIII AAGCTT 1 cut(s) 270
HinfI GANTC 9 cut(s) 123, 215, 304, 310, 483, 488, 534, 943, 1437
HpaII CCGG 7 cut(s) 48, 238, 1271, 1345, 1399, 1428, 1509
HphI GGTGA 3 cut(s) 92, 380, 1126
Hpy166II GTNNAC 4 cut(s) 251, 278, 751, 1268
Hpy188I TCNGA 7 cut(s) 23, 309, 340, 418, 942, 1222, 1378
Hpy8I GTNNAC 4 cut(s) 251, 278, 751, 1268
Hpy99I CGWCG 2 cut(s) 23, 1456
HpyAV CCTTC 3 cut(s) 890, 1213, 1457
HpyCH4III ACNGT 7 cut(s) 80, 248, 580, 625, 991, 1031, 1262
HpyCH4IV ACGT 3 cut(s) 1080, 1451, 1471
HpyCH4V TGCA 7 cut(s) 268, 583, 987, 1023, 1034, 1209, 1487
HpyF10VI GCNNNNNNNGC 3 cut(s) 740, 1053, 1371
HpyF3I CTNAG 8 cut(s) 11, 58, 106, 615, 1043, 1228, 1334, 1375
HpySE526I ACGT 3 cut(s) 1080, 1451, 1471
Hsp92II CATG 6 cut(s) 284, 551, 690, 792, 951, 1016
Kpn2I TCCGGA 1 cut(s) 237
Ksp22I TGATCA 2 cut(s) 510, 720
Kzo9I GATC 9 cut(s) 335, 405, 510, 646, 720, 1313, 1412, 1424, 1445
LmnI GCTCC 3 cut(s) 447, 602, 1220
Lsp1109I GCAGC 4 cut(s) 533, 730, 1007, 1325
LweI GCATC 2 cut(s) 255, 1200
MaeI CTAG 2 cut(s) 492, 1311
MaeII ACGT 3 cut(s) 1080, 1451, 1471
MaeIII GTNAC 9 cut(s) 131, 152, 386, 585, 610, 619, 953, 1081, 1501
MalI GATC 9 cut(s) 337, 407, 512, 648, 722, 1315, 1414, 1426, 1447
MbiI CCGCTC 1 cut(s) 179
MboI GATC 9 cut(s) 335, 405, 510, 646, 720, 1313, 1412, 1424, 1445
MboII GAAGA 5 cut(s) 155, 491, 536, 641, 821
MflI RGATCY 3 cut(s) 405, 646, 1424
MhlI GDGCHC 1 cut(s) 1012
MluCI AATT 2 cut(s) 439, 1404
MlyI GAGTC 2 cut(s) 117, 937
MmeI TCCRAC 1 cut(s) 780
MroI TCCGGA 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 1288
MseI TTAA 7 cut(s) 231, 347, 380, 455, 887, 1403, 1491
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 7 cut(s) 48, 238, 1271, 1345, 1399, 1428, 1509
MspR9I CCNGG 1 cut(s) 1089
Mva1269I GAATGC 1 cut(s) 920
MvaI CCWGG 1 cut(s) 1089
MwoI GCNNNNNNNGC 3 cut(s) 740, 1053, 1371
NdeII GATC 9 cut(s) 335, 405, 510, 646, 720, 1313, 1412, 1424, 1445
NlaIII CATG 6 cut(s) 284, 551, 690, 792, 951, 1016
NlaIV GGNNCC 2 cut(s) 449, 794
NmuCI GTSAC 4 cut(s) 386, 619, 953, 1081
PagI TCATGA 1 cut(s) 1012
PctI GAATGC 1 cut(s) 920
PdmI GAANNNNTTC 1 cut(s) 1288
PfeI GAWTC 7 cut(s) 215, 304, 310, 483, 488, 534, 1437
PflMI CCANNNNNTGG 1 cut(s) 762
PinAI ACCGGT 2 cut(s) 1270, 1508
PleI GAGTC 2 cut(s) 117, 937
PpsI GAGTC 2 cut(s) 117, 937
PshBI ATTAAT 1 cut(s) 231
Psp1406I AACGTT 1 cut(s) 1471
Psp6I CCWGG 1 cut(s) 1087
PspEI GGTNACC 1 cut(s) 386
PspFI CCCAGC 1 cut(s) 659
PspGI CCWGG 1 cut(s) 1087
PspN4I GGNNCC 2 cut(s) 449, 794
PstNI CAGNNNCTG 2 cut(s) 479, 1094
PsuI RGATCY 3 cut(s) 405, 646, 1424
RsaI GTAC 2 cut(s) 358, 667
RsaNI GTAC 2 cut(s) 357, 666
SaqAI TTAA 7 cut(s) 231, 347, 380, 455, 887, 1403, 1491
Sau3AI GATC 9 cut(s) 335, 405, 510, 646, 720, 1313, 1412, 1424, 1445
SchI GAGTC 2 cut(s) 117, 937
ScrFI CCNGG 1 cut(s) 1089
SduI GDGCHC 1 cut(s) 1012
SfaNI GCATC 2 cut(s) 255, 1200
SfcI CTRYAG 2 cut(s) 642, 1258
SmlI CTYRAG 2 cut(s) 180, 909
SmoI CTYRAG 2 cut(s) 180, 909
Sse9I AATT 2 cut(s) 439, 1404
SsiI CCGC 8 cut(s) 68, 174, 177, 374, 554, 918, 1308, 1342
SspI AATATT 2 cut(s) 328, 904
SspMI CTAG 2 cut(s) 492, 1311
StyD4I CCNGG 1 cut(s) 1087
StyI CCWWGG 1 cut(s) 1366
TaaI ACNGT 7 cut(s) 80, 248, 580, 625, 991, 1031, 1262
TaiI ACGT 3 cut(s) 1083, 1454, 1474
TaqI TCGA 3 cut(s) 486, 1294, 1393
TaqII GACCGA 1 cut(s) 1317
TasI AATT 2 cut(s) 439, 1404
TatI WGTACW 1 cut(s) 665
TauI GCSGC 6 cut(s) 71, 179, 377, 557, 921, 1344
TfiI GAWTC 7 cut(s) 215, 304, 310, 483, 488, 534, 1437
Tru1I TTAA 7 cut(s) 231, 347, 380, 455, 887, 1403, 1491
Tru9I TTAA 7 cut(s) 231, 347, 380, 455, 887, 1403, 1491
TscAI CASTG 3 cut(s) 628, 710, 994
TseFI GTSAC 4 cut(s) 386, 619, 953, 1081
TseI GCWGC 4 cut(s) 521, 743, 995, 1338
Tsp45I GTSAC 4 cut(s) 386, 619, 953, 1081
TspDTI ATGAA 5 cut(s) 155, 536, 675, 777, 1401
TspGWI ACGGA 2 cut(s) 579, 774
TspRI CASTG 3 cut(s) 628, 710, 994
Van91I CCANNNNNTGG 1 cut(s) 762
VspI ATTAAT 1 cut(s) 231
XmnI GAANNNNTTC 1 cut(s) 1288
XspI CTAG 2 cut(s) 492, 1311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.