Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0011106

Physical Location & Seq

Genomic Coordinates Forward (+)

20046641 .. 20047087

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG119800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGTTGTGGCGCGTGGTTCCTTGGGATCAATCGCATGTCCTCTCTGCCGGAATGGCATAGTTTCATTTGCGAAGCTTCTAAAAACAAGACCAATGGTGAAGGGGATGGCAAAAACTAGTTTATCCCTATCATTTTGCCGCTGTTCTACCGAGGAACCAGAGACAAACTCCTCAATAACCACCCCTTTATGCAAGCCCAGTTTTCGTTCCTCTCGGAAATGTTCGCTGGGATATTTCCGGTCCCAGAGCTTCCAGAAGTTCCCTTCTATCAAACTCAACTACGGCCTTTGCATGGGAGGAGTTTCAAACATTACACCTTGTTTGGTTCCGTGCTCTGTTCGTAGATGTTTGAGATCAGGCTTTAGACGAACAACTTCTCAGCCTGAGGGCAGAAGGTCATGGCTATCTGTACTCAATCAACAAGCAATGACTGGCAGCGGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006521 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010364 GO:0010366 GO:0010565 GO:0010817 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031335 GO:0031336 GO:0032350 GO:0032351 GO:0032353 GO:0032446 GO:0032501 GO:0032502 GO:0033238 GO:0033239 GO:0036211 GO:0042221 GO:0042762 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0045763 GO:0046885 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051175 GO:0051603 GO:0051865 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1900908 GO:1900909 GO:1900911 GO:1900912 GO:1901564 GO:1901565 GO:1901575 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4

Protein Analysis

148

Amino Acids

16.16

Weight (kDa)

10.24

Isoelectric Point (pI)

64.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57740
fragaria_vesca	FvH4_4g09590
malus_domestica	MD00G1085900.v1.1 MD16G1262900.v1.1
prunus_persica	Prupe.1G097200_v2.0.a1 Prupe.1G097200_v2.0.a1 Prupe.1G097200_v2.0.a1 Prupe.1G097200_v2.0.a1
pyrus_communis	pycom12494g00060
rosa_chinensis	RchiOBHm_Chr4g0404891
rosa_laevigata	RLG00000008896
rosa_multiflora	Rmu_sc0001179.1_g000005
rosa_roxburghii	Rroxscaffold_5G00349040
rosa_rugosa	Rorug04G0049700
rosa_samantha	Rh4AG125900 Rh4BG119700 Rh4BG119800 Rh4CG134100 Rh4DG119400
rosa_wichuraiana	Rw4G010180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	13
AciI	CCGC	2 cut(s)	139, 438
AclWI	GGATC	1 cut(s)	34
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	1 cut(s)	306
AhlI	ACTAGT	1 cut(s)	116
AluBI	AGCT	2 cut(s)	76, 249
AluI	AGCT	2 cut(s)	76, 249
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	1 cut(s)	435
Asp700I	GAANNNNTTC	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	240
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	240
AxyI	CCTNAGG	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	335
BccI	CCATC	1 cut(s)	100
BceAI	ACGGC	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	155
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	1 cut(s)	117
BglI	GCCNNNNNGGC	1 cut(s)	54
BisI	GCNGC	2 cut(s)	139, 436
BlsI	GCNGC	2 cut(s)	140, 437
Bme18I	GGWCC	1 cut(s)	240
BmgT120I	GGNCC	1 cut(s)	240
BmiI	GGNNCC	4 cut(s)	19, 156, 242, 327
BmrI	ACTGGG	1 cut(s)	192
BmsI	GCATC	1 cut(s)	431
BmuI	ACTGGG	1 cut(s)	192
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BsaJI	CCNNGG	2 cut(s)	21, 150
BsaWI	WCCGGW	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse1I	ACTGG	2 cut(s)	198, 436
Bse21I	CCTNAGG	1 cut(s)	384
Bse3DI	GCAATG	1 cut(s)	432
BseDI	CCNNGG	2 cut(s)	21, 150
BseGI	GGATG	2 cut(s)	111, 446
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	2 cut(s)	375, 392
BseNI	ACTGG	2 cut(s)	198, 436
BseRI	GAGGAG	2 cut(s)	160, 312
BseYI	CCCAGC	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	13
BshFI	GGCC	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	335
BsiSI	CCGG	2 cut(s)	49, 238
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp143I	GATC	2 cut(s)	26, 353
BspACI	CCGC	2 cut(s)	139, 438
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	2 cut(s)	376, 391
BspFNI	CGCG	1 cut(s)	13
BspLI	GGNNCC	4 cut(s)	19, 156, 242, 327
BspPI	GGATC	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	432
BsrI	ACTGG	2 cut(s)	198, 436
BssECI	CCNNGG	2 cut(s)	21, 150
BssMI	GATC	2 cut(s)	26, 353
BssT1I	CCWWGG	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	378, 384
BstF5I	GGATG	2 cut(s)	111, 446
BstFNI	CGCG	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	2 cut(s)	29, 356
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	2 cut(s)	26, 353
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 441
BstNSI	RCATGY	1 cut(s)	39
BstUI	CGCG	1 cut(s)	13
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	285
BtsCI	GGATG	2 cut(s)	111, 446
Cac8I	GCNNGC	1 cut(s)	194
CfoI	GCGC	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	3 cut(s)	36, 292, 399
CviJI	RGCY	7 cut(s)	76, 196, 249, 285, 360, 382, 403
CviKI_1	RGCY	7 cut(s)	76, 196, 249, 285, 360, 382, 403
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	2 cut(s)	378, 384
DpnI	GATC	2 cut(s)	28, 355
DpnII	GATC	2 cut(s)	26, 353
Eco130I	CCWWGG	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	240
Eco81I	CCTNAGG	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	3 cut(s)	39, 295, 402
FaiI	YATR	5 cut(s)	37, 59, 190, 293, 400
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	3 cut(s)	35, 291, 398
Fnu4HI	GCNGC	2 cut(s)	139, 436
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	2 cut(s)	139, 436
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	2 cut(s)	139, 436
GsaI	CCCAGC	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	2 cut(s)	49, 238
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	3 cut(s)	39, 295, 402
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HindIII	AAGCTT	1 cut(s)	74
HpaII	CCGG	2 cut(s)	49, 238
HphI	GGTGA	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	1 cut(s)	253
HpyAV	CCTTC	3 cut(s)	94, 273, 387
HpyCH4V	TGCA	2 cut(s)	192, 291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 441
HpyF3I	CTNAG	2 cut(s)	378, 384
Hsp92II	CATG	3 cut(s)	39, 295, 402
HspAI	GCGC	1 cut(s)	11
Kzo9I	GATC	2 cut(s)	26, 353
LweI	GCATC	1 cut(s)	431
MaeI	CTAG	1 cut(s)	117
MalI	GATC	2 cut(s)	28, 355
MboI	GATC	2 cut(s)	26, 353
MhlI	GDGCHC	1 cut(s)	335
MnlI	CCTC	6 cut(s)	51, 145, 181, 220, 290, 379
MroXI	GAANNNNTTC	1 cut(s)	373
MspA1I	CMGCKG	2 cut(s)	141, 438
MspI	CCGG	2 cut(s)	49, 238
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	2 cut(s)	54, 441
NdeII	GATC	2 cut(s)	26, 353
NlaIII	CATG	3 cut(s)	39, 295, 402
NlaIV	GGNNCC	4 cut(s)	19, 156, 242, 327
NspI	RCATGY	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	140, 437
PspFI	CCCAGC	1 cut(s)	226
PspN4I	GGNNCC	4 cut(s)	19, 156, 242, 327
PspPI	GGNCC	1 cut(s)	240
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
SatI	GCNGC	2 cut(s)	139, 436
Sau3AI	GATC	2 cut(s)	26, 353
Sau96I	GGNCC	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	335
SetI	ASST	4 cut(s)	78, 251, 319, 398
SfaNI	GCATC	1 cut(s)	431
SinI	GGWCC	1 cut(s)	240
SpeI	ACTAGT	1 cut(s)	116
SsiI	CCGC	2 cut(s)	139, 438
SspMI	CTAG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	21
TatI	WGTACW	1 cut(s)	409
TauI	GCSGC	1 cut(s)	141
TseI	GCWGC	1 cut(s)	435
TspDTI	ATGAA	1 cut(s)	54
TspGWI	ACGGA	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	240
XceI	RCATGY	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	373
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.