Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0011106

Physical Location & Seq

Genomic Coordinates Forward (+)

17354316 .. 17360797

Gene Structure 6482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1085900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGAAATTTCTAAGCGTTATGGGAAATTCATTTGGATGTTCAGCATCCGGGGAGCGGTTAGTTTCAGCAGCAAGAGATGGCGATGTTCAGGAAGCCAAGGCCTTGCTAGAATGTAACCCTCGCCTGGCAAGGTACTCCACTTTTGGTGTACGCAATTCCCCTCTCCATTATTCTGCAGCTCAGGGCCACCATGAGATAGTCTCTCTATTGCTTGAGTCTGGAGTTGATATCAATCTCAGGAATTATCGCGGTCAGACTGCTTTGATGCAAGCTTGCCAACATGGTCACTGGGAGGTTGTTCAGACTTTGATTCTTTCTAAAGCCACAATTCACAGAGCAGATTATCTGAATGGCGGTACTGCACTCCACCTTGCCGCTTTGAATGGTCATTCTCGATGCATCCGACTCCTCCTGGCTGATTACATTCCCAGCACTCCGGATTTTTGGACTACGTTAAGGAATGCTGATAGCAATGAAGAATCAATCACAGAGTTTAATCATGAGGTTTTGTTCCAGATAATTAATAGGCCCGCTGATGGAGGAATCACTGCGCTGCATATGGCAGCACTGAACGGTCACATTGAAAGCGTACAACTACTTTTGGATTTAGGGGCTTCTGTTTCTAAGGTGACTGTGCAAGACGGAGCTACAATTGATCTAATAGGTGCTGGAAGCACAGCCCTACATTATGCTGCATGCGGAGGAAATGCACAATGTTGTCAAATTTTGATTTCCAGGGGATCCAGTCTGAATGCTGAAAATGCCAATGGAAGGACTCCCTTGATGGTGGCTCGGTCATGGCATAGAGACTGGCTTGAGGAAATCCTTACCTCTGAGCAAGAAGGCCAGTCACAGATTATTCCTTCACCATACCTATCTCTTCCCCTTATGAGCATTATGAAGATTGCTAGAGAATGTGGATGGAGGAACAATGATTCTTTATCTACGTGCCAAGATCCATGTGTTGTCTGTTTGGAACAACAGTGCACAGTGGCCGCAGAAGGTTGCGATCATGAGTTCTGCACTAGGTGTGCCTTGTACCTTTGTTCCACTAACTGCACTTCAACTGTGTCCAATGGCCCCCCGGGCTCAATCGTATGTCCTCTCTGCCGAAATGGCATAGTTTCATTTGTCAAGCTTCGAGGAGCAAGATCAATGGCCAAGGAGAATGCAAGAACAAGTTTATCACTATCATTTTGCACATGTTCTTCTGAGGGATCAGATTCCTCCTCATTAACAACCCCATTGTACAAGCCTGAGTTTCGTTGCTCCGGAAAATCCCCTCTCGGGTCTTTCAGGTCCCACAGCTGCCAGAAGTTCCCATCAATTAAGATCAACTACAACCTTTGCATGGGAGCTCCAAATATTAATCCTTGTTTGGTTCCAAGCTCTAGTAGTCGAAAGTTGCGGAACCGTTTGGCTAGATGTTCCAGAACAGGCTTTAGGCGATCGGCTTCTCAACCCGATGGCAGAAGGTCGTGGTTCTCTTCATTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006521 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010364 GO:0010366 GO:0010565 GO:0010817 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031335 GO:0031336 GO:0032350 GO:0032351 GO:0032353 GO:0032446 GO:0032501 GO:0032502 GO:0033238 GO:0033239 GO:0036211 GO:0042221 GO:0042762 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0045763 GO:0046885 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051175 GO:0051603 GO:0051865 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1900908 GO:1900909 GO:1900911 GO:1900912 GO:1901564 GO:1901565 GO:1901575 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4

Protein Analysis

500

Amino Acids

54.25

Weight (kDa)

8.34

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	21 - 111	2e-15	Ankyrin repeats (3 copies)
Ank	PF00023	52 - 81	2.5e-07	Ankyrin repeat
Ank_4	PF13637	55 - 104	6.5e-11	Ankyrin repeats (many copies)
Ank_2	PF12796	117 - 208	1.8e-10	Ankyrin repeats (3 copies)
Ank	PF00023	181 - 209	2.8e-06	Ankyrin repeat
Ank_2	PF12796	223 - 276	4.4e-09	Ankyrin repeats (3 copies)
Ank	PF00023	224 - 254	2.6e-06	Ankyrin repeat
RING_XB3-XBAT31	PF24921	321 - 376	9.6e-18	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57740
fragaria_vesca	FvH4_4g09590
malus_domestica	MD00G1085900.v1.1 MD16G1262900.v1.1
prunus_persica	Prupe.1G097200_v2.0.a1 Prupe.1G097200_v2.0.a1 Prupe.1G097200_v2.0.a1 Prupe.1G097200_v2.0.a1
pyrus_communis	pycom12494g00060
rosa_chinensis	RchiOBHm_Chr4g0404891
rosa_laevigata	RLG00000008896
rosa_multiflora	Rmu_sc0001179.1_g000005
rosa_roxburghii	Rroxscaffold_5G00349040
rosa_rugosa	Rorug04G0049700
rosa_samantha	Rh4AG125900 Rh4BG119700 Rh4BG119800 Rh4CG134100 Rh4DG119400
rosa_wichuraiana	Rw4G010180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	55
AccII	CGCG	1 cut(s)	249
AccIII	TCCGGA	2 cut(s)	436, 1271
AciI	CCGC	8 cut(s)	55, 249, 354, 375, 531, 699, 996, 1408
AclWI	GGATC	4 cut(s)	735, 748, 950, 1225
AcoI	YGGCCR	2 cut(s)	993, 1158
AcsI	RAATTY	3 cut(s)	5, 25, 723
AdeI	CACNNNGTG	1 cut(s)	1029
AfaI	GTAC	6 cut(s)	134, 150, 358, 591, 1040, 1250
AfiI	CCNNNNNNNGG	6 cut(s)	54, 124, 536, 771, 1287, 1351
AflIII	ACRYGT	1 cut(s)	1202
AgsI	TTSAA	4 cut(s)	382, 584, 1065, 1495
AjnI	CCWGG	3 cut(s)	123, 411, 734
AluBI	AGCT	7 cut(s)	179, 272, 647, 1138, 1308, 1358, 1389
AluI	AGCT	7 cut(s)	179, 272, 647, 1138, 1308, 1358, 1389
Alw21I	GWGCWC	2 cut(s)	989, 1360
Alw26I	GTCTC	2 cut(s)	205, 801
Alw44I	GTGCAC	1 cut(s)	985
AlwI	GGATC	4 cut(s)	735, 748, 950, 1225
Ama87I	CYCGRG	2 cut(s)	1084, 1286
Aor13HI	TCCGGA	2 cut(s)	436, 1271
AoxI	GGCC	7 cut(s)	99, 184, 527, 844, 993, 1078, 1158
ApaLI	GTGCAC	1 cut(s)	985
ApeKI	GCWGC	6 cut(s)	68, 176, 553, 563, 692, 1308
ApoI	RAATTY	3 cut(s)	5, 25, 723
AseI	ATTAAT	2 cut(s)	522, 1368
AspLEI	GCGC	1 cut(s)	553
AspS9I	GGNCC	4 cut(s)	184, 528, 1079, 1299
AsuC2I	CCSGG	3 cut(s)	49, 1085, 1086
AsuHPI	GGTGA	2 cut(s)	640, 858
AvaI	CYCGRG	2 cut(s)	1084, 1286
AvaII	GGWCC	1 cut(s)	1299
BaeGI	GKGCMC	1 cut(s)	989
BalI	TGGCCA	1 cut(s)	1160
BamHI	GGATCC	1 cut(s)	740
BanII	GRGCYC	2 cut(s)	1091, 1360
Bbv12I	GWGCWC	2 cut(s)	989, 1360
BbvI	GCAGC	6 cut(s)	80, 188, 540, 575, 679, 1295
BccI	CCATC	6 cut(s)	71, 530, 778, 915, 1330, 1460
BciT130I	CCWGG	3 cut(s)	125, 413, 736
BcnI	CCSGG	3 cut(s)	49, 1085, 1086
BcoDI	GTCTC	2 cut(s)	205, 801
BfaI	CTAG	5 cut(s)	107, 909, 1026, 1392, 1422
BfmI	CTRYAG	1 cut(s)	174
BglI	GCCNNNNNGGC	2 cut(s)	1086, 1116
BisI	GCNGC	8 cut(s)	69, 177, 375, 554, 564, 693, 996, 1309
BlsI	GCNGC	8 cut(s)	70, 178, 376, 555, 565, 694, 997, 1310
Bme1390I	CCNGG	6 cut(s)	49, 125, 413, 736, 1085, 1086
Bme18I	GGWCC	1 cut(s)	1299
BmeT110I	CYCGRG	2 cut(s)	1084, 1286
BmgT120I	GGNCC	4 cut(s)	184, 528, 1079, 1299
BmiI	GGNNCC	5 cut(s)	742, 1081, 1301, 1383, 1412
BmrFI	CCNGG	6 cut(s)	49, 125, 413, 736, 1085, 1086
BmrI	ACTGGG	1 cut(s)	298
BmsI	GCATC	4 cut(s)	53, 255, 386, 408
BmuI	ACTGGG	1 cut(s)	298
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
BpmI	CTGGAG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	2 cut(s)	233, 836
BpuMI	CCSGG	3 cut(s)	49, 1085, 1086
BsaAI	YACGTR	1 cut(s)	948
BsaBI	GATNNNNATC	1 cut(s)	231
BsaJI	CCNNGG	6 cut(s)	48, 96, 735, 1083, 1084, 1161
BsaWI	WCCGGW	2 cut(s)	436, 1271
Bsc4I	CCNNNNNNNGG	6 cut(s)	54, 124, 536, 771, 1287, 1351
Bse1I	ACTGG	4 cut(s)	293, 744, 815, 847
Bse3DI	GCAATG	1 cut(s)	478
Bse8I	GATNNNNATC	1 cut(s)	231
BseAI	TCCGGA	2 cut(s)	436, 1271
BseBI	CCWGG	3 cut(s)	125, 413, 736
BseDI	CCNNGG	6 cut(s)	48, 96, 735, 1083, 1084, 1161
BseGI	GGATG	4 cut(s)	41, 44, 399, 926
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	6 cut(s)	54, 124, 536, 771, 1287, 1351
BseMI	GCAATG	1 cut(s)	478
BseMII	CTCAG	5 cut(s)	194, 250, 825, 1203, 1248
BseNI	ACTGG	4 cut(s)	293, 744, 815, 847
BseRI	GAGGAG	3 cut(s)	398, 1158, 1219
BseSI	GKGCMC	1 cut(s)	989
BseXI	GCAGC	6 cut(s)	80, 188, 540, 575, 679, 1295
BseYI	CCCAGC	1 cut(s)	428
BsgI	GTGCAG	3 cut(s)	345, 1006, 1042
Bsh1236I	CGCG	1 cut(s)	249
Bsh1285I	CGRYCG	1 cut(s)	1451
BshFI	GGCC	7 cut(s)	101, 186, 529, 846, 995, 1080, 1160
BsiEI	CGRYCG	1 cut(s)	1451
BsiHKAI	GWGCWC	2 cut(s)	989, 1360
BsiHKCI	CYCGRG	2 cut(s)	1084, 1286
BsiSI	CCGG	4 cut(s)	48, 437, 1085, 1272
BslFI	GGGAC	1 cut(s)	1285
BslI	CCNNNNNNNGG	6 cut(s)	54, 124, 536, 771, 1287, 1351
BsmAI	GTCTC	2 cut(s)	205, 801
BsmFI	GGGAC	1 cut(s)	1285
BsmI	GAATGC	3 cut(s)	466, 757, 1174
BsnI	GGCC	7 cut(s)	101, 186, 529, 846, 995, 1080, 1160
BsoBI	CYCGRG	2 cut(s)	1084, 1286
Bsp1286I	GDGCHC	3 cut(s)	989, 1091, 1360
Bsp13I	TCCGGA	2 cut(s)	436, 1271
Bsp1407I	TGTACA	1 cut(s)	1248
Bsp143I	GATC	8 cut(s)	655, 740, 955, 1009, 1151, 1217, 1332, 1448
BspACI	CCGC	8 cut(s)	55, 249, 354, 375, 531, 699, 996, 1408
BspANI	GGCC	7 cut(s)	101, 186, 529, 846, 995, 1080, 1160
BspCNI	CTCAG	5 cut(s)	193, 249, 826, 1204, 1249
BspEI	TCCGGA	2 cut(s)	436, 1271
BspFNI	CGCG	1 cut(s)	249
BspHI	TCATGA	2 cut(s)	499, 1012
BspLI	GGNNCC	5 cut(s)	742, 1081, 1301, 1383, 1412
BspMAI	CTGCAG	1 cut(s)	178
BspPI	GGATC	4 cut(s)	735, 748, 950, 1225
BsrBI	CCGCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	478
BsrGI	TGTACA	1 cut(s)	1248
BsrI	ACTGG	4 cut(s)	293, 744, 815, 847
BssECI	CCNNGG	6 cut(s)	48, 96, 735, 1083, 1084, 1161
BssMI	GATC	8 cut(s)	655, 740, 955, 1009, 1151, 1217, 1332, 1448
BssT1I	CCWWGG	2 cut(s)	96, 1161
Bst2UI	CCWGG	3 cut(s)	125, 413, 736
Bst4CI	ACNGT	6 cut(s)	575, 634, 984, 991, 1069, 1415
Bst6I	CTCTTC	2 cut(s)	885, 1492
BstAUI	TGTACA	1 cut(s)	1248
BstBAI	YACGTR	1 cut(s)	948
BstC8I	GCNNGC	4 cut(s)	270, 274, 531, 697
BstDEI	CTNAG	7 cut(s)	11, 180, 236, 624, 834, 1212, 1257
BstF5I	GGATG	4 cut(s)	41, 44, 399, 926
BstFNI	CGCG	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	8 cut(s)	658, 743, 958, 1012, 1154, 1220, 1335, 1451
BstMAI	GTCTC	2 cut(s)	205, 801
BstMBI	GATC	8 cut(s)	655, 740, 955, 1009, 1151, 1217, 1332, 1448
BstMCI	CGRYCG	1 cut(s)	1451
BstMWI	GCNNNNNNNGC	3 cut(s)	761, 1086, 1116
BstNI	CCWGG	3 cut(s)	125, 413, 736
BstNSI	RCATGY	2 cut(s)	699, 1206
BstSCI	CCNGG	6 cut(s)	47, 123, 411, 734, 1083, 1084
BstSFI	CTRYAG	1 cut(s)	174
BstSLI	GKGCMC	1 cut(s)	989
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	6 cut(s)	80, 188, 540, 575, 679, 1295
BstX2I	RGATCY	2 cut(s)	740, 955
BstYI	RGATCY	2 cut(s)	740, 955
BsuRI	GGCC	7 cut(s)	101, 186, 529, 846, 995, 1080, 1160
BtgZI	GCGATG	1 cut(s)	96
BtsCI	GGATG	4 cut(s)	41, 44, 399, 926
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	5 cut(s)	286, 546, 566, 989, 996
Cac8I	GCNNGC	4 cut(s)	270, 274, 531, 697
CciI	TCATGA	2 cut(s)	499, 1012
CfoI	GCGC	1 cut(s)	553
Cfr13I	GGNCC	4 cut(s)	184, 528, 1079, 1299
Cfr9I	CCCGGG	1 cut(s)	1084
Csp6I	GTAC	6 cut(s)	133, 149, 357, 590, 1039, 1249
CviAII	CATG	9 cut(s)	191, 281, 500, 696, 798, 960, 1013, 1203, 1351
CviQI	GTAC	6 cut(s)	133, 149, 357, 590, 1039, 1249
DdeI	CTNAG	7 cut(s)	11, 180, 236, 624, 834, 1212, 1257
DpnI	GATC	8 cut(s)	657, 742, 957, 1011, 1153, 1219, 1334, 1450
DpnII	GATC	8 cut(s)	655, 740, 955, 1009, 1151, 1217, 1332, 1448
DraIII	CACNNNGTG	1 cut(s)	1029
EaeI	YGGCCR	2 cut(s)	993, 1158
Eam1104I	CTCTTC	2 cut(s)	885, 1492
EarI	CTCTTC	2 cut(s)	885, 1492
Ecl136II	GAGCTC	1 cut(s)	1358
Eco130I	CCWWGG	2 cut(s)	96, 1161
Eco147I	AGGCCT	1 cut(s)	101
Eco24I	GRGCYC	2 cut(s)	1091, 1360
Eco32I	GATATC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	1299
Eco53kI	GAGCTC	1 cut(s)	1358
Eco88I	CYCGRG	2 cut(s)	1084, 1286
EcoICRI	GAGCTC	1 cut(s)	1358
EcoO109I	RGGNCCY	1 cut(s)	1299
EcoRII	CCWGG	3 cut(s)	123, 411, 734
EcoRV	GATATC	1 cut(s)	229
EcoT14I	CCWWGG	2 cut(s)	96, 1161
EcoT22I	ATGCAT	1 cut(s)	401
EcoT38I	GRGCYC	2 cut(s)	1091, 1360
ErhI	CCWWGG	2 cut(s)	96, 1161
FaeI	CATG	9 cut(s)	194, 284, 503, 699, 801, 963, 1016, 1206, 1354
FaqI	GGGAC	1 cut(s)	1285
FatI	CATG	9 cut(s)	190, 280, 499, 695, 797, 959, 1012, 1202, 1350
FauI	CCCGC	1 cut(s)	538
FauNDI	CATATG	1 cut(s)	558
Fnu4HI	GCNGC	8 cut(s)	69, 177, 375, 554, 564, 693, 996, 1309
FokI	GGATG	4 cut(s)	31, 48, 386, 933
FriOI	GRGCYC	2 cut(s)	1091, 1360
Fsp4HI	GCNGC	8 cut(s)	69, 177, 375, 554, 564, 693, 996, 1309
FspBI	CTAG	5 cut(s)	107, 909, 1026, 1392, 1422
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	8 cut(s)	69, 177, 375, 554, 564, 693, 996, 1309
GsaI	CCCAGC	1 cut(s)	432
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	7 cut(s)	101, 186, 529, 846, 995, 1080, 1160
HapII	CCGG	4 cut(s)	48, 437, 1085, 1272
HhaI	GCGC	1 cut(s)	553
Hin1II	CATG	9 cut(s)	194, 284, 503, 699, 801, 963, 1016, 1206, 1354
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HindIII	AAGCTT	2 cut(s)	270, 1136
HinfI	GANTC	8 cut(s)	215, 310, 405, 479, 543, 775, 935, 1223
HpaII	CCGG	4 cut(s)	48, 437, 1085, 1272
HphI	GGTGA	2 cut(s)	640, 858
Hpy166II	GTNNAC	2 cut(s)	149, 987
Hpy188I	TCNGA	8 cut(s)	255, 303, 348, 404, 750, 835, 1213, 1222
Hpy8I	GTNNAC	2 cut(s)	149, 987
HpyAV	CCTTC	5 cut(s)	765, 836, 873, 995, 1467
HpyCH4III	ACNGT	6 cut(s)	575, 634, 984, 991, 1069, 1415
HpyCH4IV	ACGT	2 cut(s)	452, 947
HpyF10VI	GCNNNNNNNGC	3 cut(s)	761, 1086, 1116
HpyF3I	CTNAG	7 cut(s)	11, 180, 236, 624, 834, 1212, 1257
HpySE526I	ACGT	2 cut(s)	452, 947
Hsp92II	CATG	9 cut(s)	194, 284, 503, 699, 801, 963, 1016, 1206, 1354
HspAI	GCGC	1 cut(s)	551
Kpn2I	TCCGGA	2 cut(s)	436, 1271
Kzo9I	GATC	8 cut(s)	655, 740, 955, 1009, 1151, 1217, 1332, 1448
LmnI	GCTCC	6 cut(s)	52, 644, 1145, 1274, 1355, 1363
Lsp1109I	GCAGC	6 cut(s)	80, 188, 540, 575, 679, 1295
LweI	GCATC	4 cut(s)	53, 255, 386, 408
MaeI	CTAG	5 cut(s)	107, 909, 1026, 1392, 1422
MaeII	ACGT	2 cut(s)	452, 947
MaeIII	GTNAC	5 cut(s)	113, 284, 575, 628, 849
MalI	GATC	8 cut(s)	657, 742, 957, 1011, 1153, 1219, 1334, 1450
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	8 cut(s)	655, 740, 955, 1009, 1151, 1217, 1332, 1448
MboII	GAAGA	5 cut(s)	488, 872, 913, 1200, 1479
MfeI	CAATTG	1 cut(s)	651
MflI	RGATCY	2 cut(s)	740, 955
MhlI	GDGCHC	3 cut(s)	989, 1091, 1360
MlsI	TGGCCA	1 cut(s)	1160
MluNI	TGGCCA	1 cut(s)	1160
MlyI	GAGTC	3 cut(s)	224, 399, 769
MmeI	TCCRAC	1 cut(s)	427
Mox20I	TGGCCA	1 cut(s)	1160
Mph1103I	ATGCAT	1 cut(s)	401
MroI	TCCGGA	2 cut(s)	436, 1271
MscI	TGGCCA	1 cut(s)	1160
MseI	TTAA	7 cut(s)	455, 495, 522, 1235, 1329, 1368, 1498
MslI	CAYNNNNRTG	1 cut(s)	34
Msp20I	TGGCCA	1 cut(s)	1160
MspA1I	CMGCKG	2 cut(s)	533, 1308
MspI	CCGG	4 cut(s)	48, 437, 1085, 1272
MspR9I	CCNGG	6 cut(s)	49, 125, 413, 736, 1085, 1086
MunI	CAATTG	1 cut(s)	651
Mva1269I	GAATGC	3 cut(s)	466, 757, 1174
MvaI	CCWGG	3 cut(s)	125, 413, 736
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	3 cut(s)	761, 1086, 1116
NciI	CCSGG	3 cut(s)	49, 1085, 1086
NdeI	CATATG	1 cut(s)	558
NdeII	GATC	8 cut(s)	655, 740, 955, 1009, 1151, 1217, 1332, 1448
NlaIII	CATG	9 cut(s)	194, 284, 503, 699, 801, 963, 1016, 1206, 1354
NlaIV	GGNNCC	5 cut(s)	742, 1081, 1301, 1383, 1412
NmuCI	GTSAC	4 cut(s)	284, 575, 628, 849
NsiI	ATGCAT	1 cut(s)	401
NspI	RCATGY	2 cut(s)	699, 1206
PaeI	GCATGC	1 cut(s)	699
PagI	TCATGA	2 cut(s)	499, 1012
PceI	AGGCCT	1 cut(s)	101
PciI	ACATGT	1 cut(s)	1202
PcsI	WCGNNNNNNNCGW	1 cut(s)	400
PctI	GAATGC	3 cut(s)	466, 757, 1174
PfeI	GAWTC	5 cut(s)	310, 479, 543, 935, 1223
PkrI	GCNGC	8 cut(s)	70, 178, 376, 555, 565, 694, 997, 1310
Ple19I	CGATCG	1 cut(s)	1451
PleI	GAGTC	3 cut(s)	223, 399, 769
PpsI	GAGTC	3 cut(s)	223, 399, 769
Ppu21I	YACGTR	1 cut(s)	948
PpuMI	RGGWCCY	1 cut(s)	1299
PscI	ACATGT	1 cut(s)	1202
PshBI	ATTAAT	2 cut(s)	522, 1368
Psp124BI	GAGCTC	1 cut(s)	1360
Psp5II	RGGWCCY	1 cut(s)	1299
Psp6I	CCWGG	3 cut(s)	123, 411, 734
PspFI	CCCAGC	1 cut(s)	428
PspGI	CCWGG	3 cut(s)	123, 411, 734
PspN4I	GGNNCC	5 cut(s)	742, 1081, 1301, 1383, 1412
PspPI	GGNCC	4 cut(s)	184, 528, 1079, 1299
PspPPI	RGGWCCY	1 cut(s)	1299
PstI	CTGCAG	1 cut(s)	178
PsuI	RGATCY	2 cut(s)	740, 955
PvuI	CGATCG	1 cut(s)	1451
PvuII	CAGCTG	1 cut(s)	1308
RsaI	GTAC	6 cut(s)	134, 150, 358, 591, 1040, 1250
RsaNI	GTAC	6 cut(s)	133, 149, 357, 590, 1039, 1249
RseI	CAYNNNNRTG	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	1360
SaqAI	TTAA	7 cut(s)	455, 495, 522, 1235, 1329, 1368, 1498
SatI	GCNGC	8 cut(s)	69, 177, 375, 554, 564, 693, 996, 1309
Sau3AI	GATC	8 cut(s)	655, 740, 955, 1009, 1151, 1217, 1332, 1448
Sau96I	GGNCC	4 cut(s)	184, 528, 1079, 1299
SchI	GAGTC	3 cut(s)	224, 399, 769
ScrFI	CCNGG	6 cut(s)	49, 125, 413, 736, 1085, 1086
SduI	GDGCHC	3 cut(s)	989, 1091, 1360
SfaNI	GCATC	4 cut(s)	53, 255, 386, 408
SfcI	CTRYAG	1 cut(s)	174
SinI	GGWCC	1 cut(s)	1299
SmaI	CCCGGG	1 cut(s)	1086
SmiMI	CAYNNNNRTG	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	212, 815
SmoI	CTYRAG	2 cut(s)	212, 815
SphI	GCATGC	1 cut(s)	699
SseBI	AGGCCT	1 cut(s)	101
SsiI	CCGC	8 cut(s)	55, 249, 354, 375, 531, 699, 996, 1408
SspI	AATATT	1 cut(s)	1366
SspMI	CTAG	5 cut(s)	107, 909, 1026, 1392, 1422
SstI	GAGCTC	1 cut(s)	1360
StuI	AGGCCT	1 cut(s)	101
StyD4I	CCNGG	6 cut(s)	47, 123, 411, 734, 1083, 1084
StyI	CCWWGG	2 cut(s)	96, 1161
TaaI	ACNGT	6 cut(s)	575, 634, 984, 991, 1069, 1415
TaiI	ACGT	2 cut(s)	455, 950
TaqI	TCGA	3 cut(s)	394, 1141, 1399
TaqII	GACCGA	1 cut(s)	783
TatI	WGTACW	1 cut(s)	1248
TauI	GCSGC	2 cut(s)	377, 998
TfiI	GAWTC	5 cut(s)	310, 479, 543, 935, 1223
Tru1I	TTAA	7 cut(s)	455, 495, 522, 1235, 1329, 1368, 1498
Tru9I	TTAA	7 cut(s)	455, 495, 522, 1235, 1329, 1368, 1498
TscAI	CASTG	5 cut(s)	293, 553, 573, 989, 996
TseFI	GTSAC	4 cut(s)	284, 575, 628, 849
TseI	GCWGC	6 cut(s)	68, 176, 553, 563, 692, 1308
Tsp45I	GTSAC	4 cut(s)	284, 575, 628, 849
TspDTI	ATGAA	6 cut(s)	17, 18, 489, 914, 1116, 1479
TspGWI	ACGGA	1 cut(s)	657
TspMI	CCCGGG	1 cut(s)	1084
TspRI	CASTG	5 cut(s)	293, 553, 573, 989, 996
VneI	GTGCAC	1 cut(s)	985
VpaK11BI	GGWCC	1 cut(s)	1299
VspI	ATTAAT	2 cut(s)	522, 1368
XapI	RAATTY	3 cut(s)	5, 25, 723
XceI	RCATGY	2 cut(s)	699, 1206
XmaI	CCCGGG	1 cut(s)	1084
XspI	CTAG	5 cut(s)	107, 909, 1026, 1392, 1422
Zsp2I	ATGCAT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.