AT5G57800

Belongs to the sterol desaturase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
23420184 .. 23424117
3934 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G57800.1

Sequence Viewer

Length: 1899 bp
ATGGTTGCTTTTTTATCAGCTTGGCCTTGGGAAAACTTTGGCAATCTCAAGTATCTTCTCTACGCTCCATTAGCTGCACAAGTAGTGTACTCGTGGGTCTATGAAGAAGATATCTCAAAGGTTCTTTGGTGTATTCATATTCTCATAATCTGCGGTCTCAAAGCACTTGTTCATGAACTATGGAGCGTTTTCAACAACATGCTTTTCGTGACTCGTACTCTAAGGATTAACCCTAAAGGGATCGACTTTAAACAGATTGATCACGAATGGCACTGGGACAATTACATAATCCTACAAGCAATAATAGTGAGCCTGATCTGTTACATGTCACCACCATTGATGATGATGATAAACAGTCTTCCTCTGTGGAACACGAAAGGACTCATCGCATTAATTGTGCTACATGTGACTTTCTCAGAGCCTTTATACTACTTTCTGCACAGATCTTTCCATCGTAACAACTACTTCTTCACACATTACCACTCTTTCCACCACTCATCTCCTGTTCCACATCCCATGACTGCTGGAAACGCAACGTTATTGGAAAACATTATCCTCTGTGTCGTAGCTGGTGTTCCATTGATTGGATGTTGCTTGTTTGGTGTTGGATCATTAAGTGCGATCTACGGTTACGCTGTTATGTTTGATTTCATGAGGTGTTTAGGACATTGTAACGTTGAGATATTCTCTCACAAGCTGTTCGAGATTCTTCCAGTCTTACGATATCTCATCTATACTCCAACGTACCATAGTCTGCATCATCAAGAAATGGGGACCAACTTTTGTCTATTTATGCCTCTCTTTGATGTTTTGGGCGATACACAAAACCCAAACTCATGGGAACTCCAAAAGAAGATTCGTTTGAGTGCAGGGGAACGGAAGAGAGTGCCGGAGTTTGTGTTCTTAGCTCACGGAGTTGATGTAATGTCGGCGATGCATGCACCGTTCGTGTTCAGATCTTTTGCTTCAATGCCATATACCACAAGGATATTCTTGCTACCGATGTGGCCATTCACGTTCTGTGTTATGTTGGGCATGTGGGCTTGGTCAAAGACTTTTCTTTTCAGCTTCTATACCCTCAGGAACAATCTTTGTCAGACTTGGGGCGTTCCTAGATTCGGATTCCAATACTTCTTACCGTTTGCTACAAAAGGAATTAATGATCAAATTGAGGCTGCGATTCTTAGAGCTGATAAGATTGGTGTTAAAGTTATAAGCTTGGCTGCTCTCAACAAGAACGAAGCTCTAAATGGTGGTGGAACACTGTTTGTCAACAAGCATCCTGACCTTAGAGTTCGTGTGGTTCATGGGAACACTTTAACTGCAGCAGTGATTCTCTATGAAATTCCAAAAGATGTGAATGAGGTTTTCTTGACTGGAGCCACTTCTAAGCTGGGAAGAGCTATTGCTCTTTACCTTTGTCGCCGTGGAGTGAGAGTTCTCATGTTGACATTGTCTATGGAAAGGTTCCAAAAGATTCAGAAAGAGGCTCCTGTTGAGTTCCAGAACAACCTTGTACAAGTGACCAAATACAATGCTGCTCAACACTGCAAGACTTGGATCGTTGGAAAATGGTTAACACCAAGAGAGCAGAGCTGGGCTCCTGCAGGGACGCATTTCCATCAGTTTGTGGTGCCACCAATCCTTAAGTTTAGAAGGAACTGCACTTACGGTGATCTAGCAGCTATGAAGCTCCCTAAAGATGTTGAAGGACTCGGAACTTGCGAGTACACGATGGAGAGAGGGGTGGTACATGCGTGCCATGCAGGAGGAGTGGTTCATATGCTTGAGGGTTGGAAGCATCATGAGGTTGGAGCCATTGATGTTGACCGTATCGATTTGGTGTGGGAAGCAGCCATGAAGTATGGTCTTAGTGCTGTTTCTTCACTCACAAATTGA

Protein Analysis

632

Amino Acids

72.29

Weight (kDa)

8.79

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_hydroxylase PF04116 133 - 274 6.5e-19 Fatty acid hydroxylase
CER1-like_C PF12076 456 - 624 4.2e-68 CER1-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57800
fragaria_vesca FvH4_4g10190
malus_domestica MD13G1273200.v1.1
prunus_persica Prupe.1G098000_v2.0.a1
pyrus_communis pycom13g28860
rosa_chinensis RchiOBHm_Chr4g0404991
rosa_laevigata RLG00000008887
rosa_multiflora Rmu_ssc0000127.1_g000007
rosa_roxburghii Rroxscaffold_5G00349160
rosa_rugosa Rorug04G0051000 Rorug04G0051100
rosa_samantha Rh4AG126700 Rh4BG120900 Rh4CG134900 Rh4DG121200
rosa_wichuraiana Rw4G010300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1214
AccB1I GGYRCC 1 cut(s) 1633
AccB7I CCANNNNNTGG 1 cut(s) 584
AciI CCGC 1 cut(s) 153
AclI AACGTT 2 cut(s) 536, 675
AclWI GGATC 3 cut(s) 248, 616, 1568
AcoI YGGCCR 1 cut(s) 1007
AcsI RAATTY 1 cut(s) 1344
AfaI GTAC 6 cut(s) 89, 217, 746, 1518, 1730, 1752
AfiI CCNNNNNNNGG 2 cut(s) 584, 1118
AflII CTTAAG 1 cut(s) 1646
AflIII ACRYGT 2 cut(s) 324, 403
AgsI TTSAA 3 cut(s) 193, 969, 1709
AjuI GAANNNNNNNTTGG 2 cut(s) 840, 872
AloI GAACNNNNNNTCC 6 cut(s) 884, 916, 1422, 1454, 1761, 1793
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 3 cut(s) 248, 616, 1568
AoxI GGCC 2 cut(s) 23, 1007
ApeKI GCWGC 7 cut(s) 74, 1175, 1223, 1325, 1538, 1682, 1853
ApoI RAATTY 1 cut(s) 1344
AseI ATTAAT 2 cut(s) 392, 1158
AspS9I GGNCC 1 cut(s) 774
AsuHPI GGTGA 2 cut(s) 321, 1685
AvaII GGWCC 1 cut(s) 774
AxyI CCTNAGG 1 cut(s) 1079
BaeI ACNNNNGTAYC 2 cut(s) 1742, 1775
BalI TGGCCA 1 cut(s) 1009
BanI GGYRCC 1 cut(s) 1633
BanII GRGCYC 1 cut(s) 1603
BauI CACGAG 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 350
BbvI GCAGC 7 cut(s) 61, 1162, 1210, 1337, 1525, 1694, 1865
BccI CCATC 3 cut(s) 459, 1629, 1729
BceAI ACGGC 1 cut(s) 1410
BclI TGATCA 2 cut(s) 259, 1162
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 2 cut(s) 1113, 1679
BfmI CTRYAG 2 cut(s) 1323, 1605
BfrI CTTAAG 1 cut(s) 1646
BglII AGATCT 2 cut(s) 443, 956
BisI GCNGC 7 cut(s) 75, 1176, 1224, 1326, 1539, 1683, 1854
BlsI GCNGC 7 cut(s) 76, 1177, 1225, 1327, 1540, 1684, 1855
Bme18I GGWCC 1 cut(s) 774
BmgT120I GGNCC 1 cut(s) 774
BmiI GGNNCC 7 cut(s) 775, 1381, 1469, 1491, 1602, 1635, 1816
BmrI ACTGGG 1 cut(s) 283
BmsI GCATC 4 cut(s) 766, 924, 1288, 1810
BmuI ACTGGG 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 350
BplI GAGNNNNNCTC 4 cut(s) 671, 703, 1585, 1617
BpmI CTGGAG 1 cut(s) 1398
BpuEI CTTGAG 2 cut(s) 32, 1808
Bsa29I ATCGAT 1 cut(s) 1836
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 26, 1426
BsaXI ACNNNNNCTCC 8 cut(s) 884, 906, 914, 936, 1422, 1452, 1761, 1791
Bsc4I CCNNNNNNNGG 2 cut(s) 584, 1118
Bse1I ACTGG 3 cut(s) 278, 713, 1381
Bse21I CCTNAGG 1 cut(s) 1079
BseCI ATCGAT 1 cut(s) 1836
BseDI CCNNGG 2 cut(s) 26, 1426
BseGI GGATG 3 cut(s) 511, 593, 1279
BseLI CCNNNNNNNGG 2 cut(s) 584, 1118
BseMII CTCAG 2 cut(s) 429, 1093
BseNI ACTGG 3 cut(s) 278, 713, 1381
BseRI GAGGAG 1 cut(s) 1785
BseXI GCAGC 7 cut(s) 61, 1162, 1210, 1337, 1525, 1694, 1865
BseYI CCCAGC 2 cut(s) 1393, 1596
BsgI GTGCAG 4 cut(s) 60, 422, 888, 1648
BshFI GGCC 2 cut(s) 25, 1009
BshNI GGYRCC 1 cut(s) 1633
BshVI ATCGAT 1 cut(s) 1836
BsiSI CCGG 1 cut(s) 890
BslFI GGGAC 3 cut(s) 290, 787, 1624
BslI CCNNNNNNNGG 2 cut(s) 584, 1118
BsmAI GTCTC 1 cut(s) 161
BsmFI GGGAC 3 cut(s) 290, 787, 1624
BsnI GGCC 2 cut(s) 25, 1009
Bso31I GGTCTC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 1603
Bsp1407I TGTACA 1 cut(s) 1516
BspACI CCGC 1 cut(s) 153
BspANI GGCC 2 cut(s) 25, 1009
BspCNI CTCAG 2 cut(s) 428, 1092
BspDI ATCGAT 1 cut(s) 1836
BspHI TCATGA 3 cut(s) 172, 651, 1804
BspLI GGNNCC 7 cut(s) 775, 1381, 1469, 1491, 1602, 1635, 1816
BspMAI CTGCAG 2 cut(s) 1327, 1609
BspPI GGATC 3 cut(s) 248, 616, 1568
BspQI GCTCTTC 1 cut(s) 1393
BspT107I GGYRCC 1 cut(s) 1633
BspTI CTTAAG 1 cut(s) 1646
BspTNI GGTCTC 1 cut(s) 161
BsrGI TGTACA 1 cut(s) 1516
BsrI ACTGG 3 cut(s) 278, 713, 1381
BssECI CCNNGG 2 cut(s) 26, 1426
BssSI CACGAG 1 cut(s) 91
BssT1I CCWWGG 1 cut(s) 26
Bst2BI CACGAG 1 cut(s) 91
Bst4CI ACNGT 7 cut(s) 356, 629, 945, 1140, 1266, 1673, 1832
Bst6I CTCTTC 2 cut(s) 875, 1393
BstAFI CTTAAG 1 cut(s) 1646
BstAUI TGTACA 1 cut(s) 1516
BstC8I GCNNGC 2 cut(s) 939, 1759
BstDEI CTNAG 8 cut(s) 221, 415, 904, 1079, 1184, 1289, 1389, 1871
BstDSI CCRYGG 1 cut(s) 1426
BstF5I GGATG 3 cut(s) 511, 593, 1279
BstMAI GTCTC 1 cut(s) 161
BstMWI GCNNNNNNNGC 4 cut(s) 71, 530, 938, 1763
BstNSI RCATGY 6 cut(s) 202, 328, 407, 941, 1039, 1757
BstSFI CTRYAG 2 cut(s) 1323, 1605
BstV1I GCAGC 7 cut(s) 61, 1162, 1210, 1337, 1525, 1694, 1865
BstV2I GAAGAC 1 cut(s) 350
BstX2I RGATCY 2 cut(s) 443, 956
BstXI CCANNNNNNTGG 1 cut(s) 837
BstYI RGATCY 2 cut(s) 443, 956
Bsu15I ATCGAT 1 cut(s) 1836
Bsu36I CCTNAGG 1 cut(s) 1079
BsuRI GGCC 2 cut(s) 25, 1009
BsuTUI ATCGAT 1 cut(s) 1836
BtgI CCRYGG 1 cut(s) 1426
BtgZI GCGATG 2 cut(s) 370, 947
BtsCI GGATG 3 cut(s) 511, 593, 1279
BtsI GCAGTG 2 cut(s) 1335, 1546
BtsIMutI CAGTG 4 cut(s) 271, 1262, 1335, 1546
Cac8I GCNNGC 2 cut(s) 939, 1759
CciI TCATGA 3 cut(s) 172, 651, 1804
Cfr13I GGNCC 1 cut(s) 774
ClaI ATCGAT 1 cut(s) 1836
CseI GACGC 1 cut(s) 1621
Csp6I GTAC 6 cut(s) 88, 216, 745, 1517, 1729, 1751
CviQI GTAC 6 cut(s) 88, 216, 745, 1517, 1729, 1751
DdeI CTNAG 8 cut(s) 221, 415, 904, 1079, 1184, 1289, 1389, 1871
DraI TTTAAA 1 cut(s) 250
EaeI YGGCCR 1 cut(s) 1007
Eam1104I CTCTTC 2 cut(s) 875, 1393
EarI CTCTTC 2 cut(s) 875, 1393
Eco130I CCWWGG 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 1603
Eco31I GGTCTC 1 cut(s) 161
Eco32I GATATC 2 cut(s) 112, 725
Eco47I GGWCC 1 cut(s) 774
Eco81I CCTNAGG 1 cut(s) 1079
EcoRV GATATC 2 cut(s) 112, 725
EcoT14I CCWWGG 1 cut(s) 26
EcoT22I ATGCAT 1 cut(s) 939
EcoT38I GRGCYC 1 cut(s) 1603
ErhI CCWWGG 1 cut(s) 26
FaqI GGGAC 3 cut(s) 290, 787, 1624
FauNDI CATATG 1 cut(s) 1782
FbaI TGATCA 2 cut(s) 259, 1162
Fnu4HI GCNGC 7 cut(s) 75, 1176, 1224, 1326, 1539, 1683, 1854
FokI GGATG 3 cut(s) 498, 600, 1266
FriOI GRGCYC 1 cut(s) 1603
Fsp4HI GCNGC 7 cut(s) 75, 1176, 1224, 1326, 1539, 1683, 1854
FspBI CTAG 2 cut(s) 1113, 1679
GluI GCNGC 7 cut(s) 75, 1176, 1224, 1326, 1539, 1683, 1854
GsaI CCCAGC 2 cut(s) 1397, 1600
GsuI CTGGAG 1 cut(s) 1398
HaeIII GGCC 2 cut(s) 25, 1009
HapII CCGG 1 cut(s) 890
HgaI GACGC 1 cut(s) 1621
HincII GTYRAC 4 cut(s) 1273, 1449, 1578, 1828
HindII GTYRAC 4 cut(s) 1273, 1449, 1578, 1828
HindIII AAGCTT 1 cut(s) 1216
HpaI GTTAAC 1 cut(s) 1578
HpaII CCGG 1 cut(s) 890
HphI GGTGA 2 cut(s) 321, 1685
Hpy166II GTNNAC 6 cut(s) 88, 1273, 1449, 1578, 1731, 1828
Hpy188I TCNGA 6 cut(s) 418, 956, 1098, 1121, 1482, 1718
Hpy8I GTNNAC 6 cut(s) 88, 1273, 1449, 1578, 1731, 1828
HpyAV CCTTC 2 cut(s) 1650, 1703
HpyCH4III ACNGT 7 cut(s) 356, 629, 945, 1140, 1266, 1673, 1832
HpyCH4IV ACGT 4 cut(s) 536, 675, 743, 1016
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 530, 938, 1763
HpyF3I CTNAG 8 cut(s) 221, 415, 904, 1079, 1184, 1289, 1389, 1871
HpySE526I ACGT 4 cut(s) 536, 675, 743, 1016
Ksp22I TGATCA 2 cut(s) 259, 1162
KspAI GTTAAC 1 cut(s) 1578
LguI GCTCTTC 1 cut(s) 1393
LmnI GCTCC 7 cut(s) 70, 183, 1379, 1495, 1606, 1698, 1814
Lsp1109I GCAGC 7 cut(s) 61, 1162, 1210, 1337, 1525, 1694, 1865
LweI GCATC 4 cut(s) 766, 924, 1288, 1810
MaeI CTAG 2 cut(s) 1113, 1679
MaeII ACGT 4 cut(s) 536, 675, 743, 1016
MaeIII GTNAC 8 cut(s) 208, 320, 327, 406, 455, 629, 671, 1522
MflI RGATCY 2 cut(s) 443, 956
MhlI GDGCHC 1 cut(s) 1603
MlsI TGGCCA 1 cut(s) 1009
MluCI AATT 6 cut(s) 280, 393, 1155, 1167, 1344, 1894
MluNI TGGCCA 1 cut(s) 1009
MlyI GAGTC 3 cut(s) 205, 375, 1707
MmeI TCCRAC 5 cut(s) 586, 764, 1546, 1775, 1792
Mox20I TGGCCA 1 cut(s) 1009
Mph1103I ATGCAT 1 cut(s) 939
MscI TGGCCA 1 cut(s) 1009
MseI TTAA 9 cut(s) 228, 249, 392, 614, 1158, 1206, 1319, 1577, 1647
Msp20I TGGCCA 1 cut(s) 1009
MspCI CTTAAG 1 cut(s) 1646
MspI CCGG 1 cut(s) 890
MwoI GCNNNNNNNGC 4 cut(s) 71, 530, 938, 1763
NdeI CATATG 1 cut(s) 1782
NlaIV GGNNCC 7 cut(s) 775, 1381, 1469, 1491, 1602, 1635, 1816
NmuCI GTSAC 4 cut(s) 208, 327, 406, 1522
NsiI ATGCAT 1 cut(s) 939
NspI RCATGY 6 cut(s) 202, 328, 407, 941, 1039, 1757
PaeI GCATGC 1 cut(s) 941
PagI TCATGA 3 cut(s) 172, 651, 1804
PciI ACATGT 2 cut(s) 324, 403
PciSI GCTCTTC 1 cut(s) 1393
PcsI WCGNNNNNNNCGW 1 cut(s) 1722
PfeI GAWTC 7 cut(s) 706, 856, 1116, 1122, 1180, 1333, 1477
PflFI GACNNNGTC 1 cut(s) 1453
PflMI CCANNNNNTGG 1 cut(s) 584
PkrI GCNGC 7 cut(s) 76, 1177, 1225, 1327, 1540, 1684, 1855
PleI GAGTC 3 cut(s) 205, 375, 1707
PpsI GAGTC 3 cut(s) 205, 375, 1707
PscI ACATGT 2 cut(s) 324, 403
PshBI ATTAAT 2 cut(s) 392, 1158
PsiI TTATAA 1 cut(s) 1214
Psp1406I AACGTT 2 cut(s) 536, 675
PspFI CCCAGC 2 cut(s) 1393, 1596
PspN4I GGNNCC 7 cut(s) 775, 1381, 1469, 1491, 1602, 1635, 1816
PspPI GGNCC 1 cut(s) 774
PsrI GAACNNNNNNTAC 4 cut(s) 558, 590, 1652, 1684
PstI CTGCAG 2 cut(s) 1327, 1609
PsuI RGATCY 2 cut(s) 443, 956
PsyI GACNNNGTC 1 cut(s) 1453
RsaI GTAC 6 cut(s) 89, 217, 746, 1518, 1730, 1752
RsaNI GTAC 6 cut(s) 88, 216, 745, 1517, 1729, 1751
SapI GCTCTTC 1 cut(s) 1393
SaqAI TTAA 9 cut(s) 228, 249, 392, 614, 1158, 1206, 1319, 1577, 1647
SatI GCNGC 7 cut(s) 75, 1176, 1224, 1326, 1539, 1683, 1854
Sau96I GGNCC 1 cut(s) 774
SbfI CCTGCAGG 1 cut(s) 1609
SchI GAGTC 3 cut(s) 205, 375, 1707
SdaI CCTGCAGG 1 cut(s) 1609
SduI GDGCHC 1 cut(s) 1603
SfaNI GCATC 4 cut(s) 766, 924, 1288, 1810
SfcI CTRYAG 2 cut(s) 1323, 1605
SinI GGWCC 1 cut(s) 774
SmlI CTYRAG 3 cut(s) 47, 1646, 1787
SmoI CTYRAG 3 cut(s) 47, 1646, 1787
SphI GCATGC 1 cut(s) 941
Sse8387I CCTGCAGG 1 cut(s) 1609
Sse9I AATT 6 cut(s) 280, 393, 1155, 1167, 1344, 1894
SsiI CCGC 1 cut(s) 153
SspMI CTAG 2 cut(s) 1113, 1679
StyI CCWWGG 1 cut(s) 26
TaaI ACNGT 7 cut(s) 356, 629, 945, 1140, 1266, 1673, 1832
TaiI ACGT 4 cut(s) 539, 678, 746, 1019
TaqI TCGA 3 cut(s) 243, 702, 1836
TasI AATT 6 cut(s) 280, 393, 1155, 1167, 1344, 1894
TatI WGTACW 3 cut(s) 87, 1516, 1728
TfiI GAWTC 7 cut(s) 706, 856, 1116, 1122, 1180, 1333, 1477
Tru1I TTAA 9 cut(s) 228, 249, 392, 614, 1158, 1206, 1319, 1577, 1647
Tru9I TTAA 9 cut(s) 228, 249, 392, 614, 1158, 1206, 1319, 1577, 1647
TscAI CASTG 4 cut(s) 278, 1269, 1335, 1553
TseFI GTSAC 4 cut(s) 208, 327, 406, 1522
TseI GCWGC 7 cut(s) 74, 1175, 1223, 1325, 1538, 1682, 1853
Tsp45I GTSAC 4 cut(s) 208, 327, 406, 1522
TspGWI ACGGA 2 cut(s) 892, 927
TspRI CASTG 4 cut(s) 278, 1269, 1335, 1553
Tth111I GACNNNGTC 1 cut(s) 1453
Van91I CCANNNNNTGG 1 cut(s) 584
Vha464I CTTAAG 1 cut(s) 1646
VpaK11BI GGWCC 1 cut(s) 774
VspI ATTAAT 2 cut(s) 392, 1158
XapI RAATTY 1 cut(s) 1344
XceI RCATGY 6 cut(s) 202, 328, 407, 941, 1039, 1757
XcmI CCANNNNNNNNNTGG 1 cut(s) 1390
XspI CTAG 2 cut(s) 1113, 1679
Zsp2I ATGCAT 1 cut(s) 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.