Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0015181

Physical Location & Seq

Genomic Coordinates Reverse (-)

19203742 .. 19209374

Gene Structure 5633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG121200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGGGTGCTCCTTTGTCGGCTTGGCCTTGGGAGAACTTAGGATCCTACAAGTATCTGCTGTTTGGACCTATGATTTGGAAAGCCTTTTACTCGATCGTCTATGAGGATGTCCCTCCTATGCAAAGCTGGTGTCTCCATGTTCTCCTCATCTGTGCGCTTCGAGGACTAATTCATCAGCTGTGGAACAGTTACAGTAACATGCTTTTCCTAACCCGGAATCGCCGGATTATCAAACAAGGTGTTGATTTCAAGCAGATTGATACAGAATGGCACTGGGACAATTTCATACTTCTTCATGGTTTGATTGCATCCATGGCATGTTATCTAGTTCCATACCTTCAAGAGCTTCCTGTGTGGAATGCAAAAGGCTTAATTACAAGCATAGTACTCCACGTGGGAGTTTCAGAGCCTTTATATTATTGGGTACATAGACAATTTCATGCCAACGACTTTTATCAAAATTACCACTCCTTTCACCATTCATCTCCAGTACCCCAACCTTTAACAGCCGGAAATGCAACATTTATGGAGCATCTAATATTGACTGTGATCATTGGAATTCCAATTCTGGGTTCTACTCTGATGGGTTTTGGATCAATCGGCATCATCTACGGCTACTTGTCGGTATTCGATTTTTTGATGTGCTTGGGGCATAGCAATGTTGAAGTTATTTCTCATAAACTATATGAGAAAATTCCATTTCTCAAATACCTTCTCTATACTCCAACATACCACACCCTGCACCACACTGAAATGGCCACCAACTTCTGCCTTTTCATGCCTCTCTTTGATGCATTGGGGAGTACACTAAACCAAAAGTCTTGGGAATTACACAAGGAGATGAGCCTAAAAGCAGGAGTAAATGGAAATATACCGGATTTCGTTTTCCTTGCTCATGTGGTGGATTTGTCGTCGGCGATGCACGTTCCGTTTGTTTTCCGATCATTTGCTTCAATTCCCTTCTCATTTAGGCTCTTCCAGCTGCCGTGTTATCCTTCTGGCATTGTGGTGTGTCTAGCAATGTGGGCATGGGCAAAAGCATTTTTGGTTACCTTTTACAACCTCAGAGGTCGGTTGCACCAGACTTGGGCTGTACCCAGATATGGCTTTCAGTACTTTTTGCCATTTGCTCTGGACGGAATCAATAATCAAATAGAGCAAGCCATCCTCAGAGCTGACAAGTTGGGGGTCAAGGTCATCAGCCTGGCTGCATTAAATAAGAACGAAGCACTGAATGGGGGAGGAACGCTGTTTGTTAATAAGCATCCGGATCTTAGAGTTCGAGTTGTGCATGGGAACACCTTAACTGCTGCTGTTATTCTCAATGAGATCCCAAAGGATTGCCTAGAGGTGTTTCTGACCGGAGCAACTTCCAAGCTCGGAAGAGCCATTGCTCTCTACCTCTGTAGAAGGAAAGTTCGAGTCCTTGTAAGTATATTTTCTTCACCTTTCAGTTTCAGTTTAGACTTTTGGGTTAAGGGTTCAAACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006629 GO:0006723 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016491 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0042175 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043446 GO:0043447 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0055114 GO:0071704 GO:0071944 GO:0098827 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

497

Amino Acids

56.66

Weight (kDa)

8.9

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	129 - 269	4.9e-20	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57800
fragaria_vesca	FvH4_4g10190
malus_domestica	MD13G1273200.v1.1
prunus_persica	Prupe.1G098000_v2.0.a1
pyrus_communis	pycom13g28860
rosa_chinensis	RchiOBHm_Chr4g0404991
rosa_laevigata	RLG00000008887
rosa_multiflora	Rmu_ssc0000127.1_g000007
rosa_roxburghii	Rroxscaffold_5G00349160
rosa_rugosa	Rorug04G0051000 Rorug04G0051100
rosa_samantha	Rh4AG126700 Rh4BG120900 Rh4CG134900 Rh4DG121200
rosa_wichuraiana	Rw4G010300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	1267
AclWI	GGATC	5 cut(s)	36, 49, 601, 1278, 1324
AcoI	YGGCCR	1 cut(s)	756
AcsI	RAATTY	2 cut(s)	558, 693
AcvI	CACGTG	1 cut(s)	394
AfaI	GTAC	6 cut(s)	387, 426, 492, 805, 1095, 1115
AfiI	CCNNNNNNNGG	3 cut(s)	569, 1087, 1103
AflIII	ACRYGT	1 cut(s)	1488
AgsI	TTSAA	5 cut(s)	250, 341, 665, 954, 1485
AjnI	CCWGG	1 cut(s)	1203
AjuI	GAANNNNNNNTTGG	2 cut(s)	556, 588
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
AluBI	AGCT	6 cut(s)	126, 178, 346, 982, 1175, 1378
AluI	AGCT	6 cut(s)	126, 178, 346, 982, 1175, 1378
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	5 cut(s)	36, 49, 601, 1278, 1324
Aor13HI	TCCGGA	1 cut(s)	1267
AoxI	GGCC	2 cut(s)	23, 756
ApeKI	GCWGC	3 cut(s)	982, 1208, 1310
ApoI	RAATTY	2 cut(s)	558, 693
ArsI	GACNNNNNNTTYG	4 cut(s)	57, 89, 115, 147
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	1 cut(s)	65
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	2 cut(s)	467, 1437
AvaII	GGWCC	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	758
BamHI	GGATCC	1 cut(s)	41
BarI	GAAGNNNNNNTAC	2 cut(s)	1426, 1458
BbrPI	CACGTG	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	3 cut(s)	969, 1195, 1297
BccI	CCATC	2 cut(s)	577, 1172
BceAI	ACGGC	2 cut(s)	628, 970
BciT130I	CCWGG	1 cut(s)	1205
BclI	TGATCA	1 cut(s)	549
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	3 cut(s)	326, 1016, 1346
BfmI	CTRYAG	1 cut(s)	1405
BisI	GCNGC	3 cut(s)	983, 1209, 1311
BlsI	GCNGC	3 cut(s)	984, 1210, 1312
BmcAI	AGTACT	2 cut(s)	387, 1115
Bme1390I	CCNGG	2 cut(s)	214, 1205
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	2 cut(s)	214, 1205
BmrI	ACTGGG	1 cut(s)	283
BmsI	GCATC	6 cut(s)	317, 541, 612, 781, 909, 1273
BmuI	ACTGGG	1 cut(s)	283
BpmI	CTGGAG	1 cut(s)	471
BpuMI	CCSGG	1 cut(s)	214
BsaAI	YACGTR	1 cut(s)	394
BsaJI	CCNNGG	2 cut(s)	26, 312
BsaWI	WCCGGW	3 cut(s)	874, 1267, 1361
Bsc4I	CCNNNNNNNGG	3 cut(s)	569, 1087, 1103
Bse1I	ACTGG	2 cut(s)	278, 488
Bse3DI	GCAATG	3 cut(s)	664, 1026, 1389
BseAI	TCCGGA	1 cut(s)	1267
BseBI	CCWGG	1 cut(s)	1205
BseDI	CCNNGG	2 cut(s)	26, 312
BseGI	GGATG	4 cut(s)	112, 308, 1164, 1264
BseLI	CCNNNNNNNGG	3 cut(s)	569, 1087, 1103
BseMI	GCAATG	3 cut(s)	664, 1026, 1389
BseMII	CTCAG	2 cut(s)	1078, 1183
BseNI	ACTGG	2 cut(s)	278, 488
BseRI	GAGGAG	1 cut(s)	134
BseXI	GCAGC	3 cut(s)	969, 1195, 1297
BsgI	GTGCAG	1 cut(s)	725
Bsh1285I	CGRYCG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	25, 758
BsiEI	CGRYCG	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	6 cut(s)	214, 223, 510, 875, 1268, 1362
BslFI	GGGAC	2 cut(s)	95, 290
BslI	CCNNNNNNNGG	3 cut(s)	569, 1087, 1103
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	2 cut(s)	95, 290
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	2 cut(s)	25, 758
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp13I	TCCGGA	1 cut(s)	1267
Bsp143I	GATC	7 cut(s)	41, 93, 549, 593, 941, 1270, 1329
Bsp19I	CCATGG	1 cut(s)	312
BspANI	GGCC	2 cut(s)	25, 758
BspCNI	CTCAG	2 cut(s)	1077, 1182
BspEI	TCCGGA	1 cut(s)	1267
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	5 cut(s)	36, 49, 601, 1278, 1324
BspQI	GCTCTTC	2 cut(s)	980, 1378
BsrDI	GCAATG	3 cut(s)	664, 1026, 1389
BsrI	ACTGG	2 cut(s)	278, 488
BssECI	CCNNGG	2 cut(s)	26, 312
BssMI	GATC	7 cut(s)	41, 93, 549, 593, 941, 1270, 1329
BssT1I	CCWWGG	2 cut(s)	26, 312
Bst2UI	CCWGG	1 cut(s)	1205
Bst4CI	ACNGT	3 cut(s)	188, 194, 547
Bst6I	CTCTTC	2 cut(s)	980, 1378
BstBAI	YACGTR	1 cut(s)	394
BstC8I	GCNNGC	1 cut(s)	1161
BstDEI	CTNAG	4 cut(s)	37, 1064, 1169, 1274
BstDSI	CCRYGG	1 cut(s)	312
BstEII	GGTNACC	1 cut(s)	1048
BstF5I	GGATG	4 cut(s)	112, 308, 1164, 1264
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	7 cut(s)	44, 96, 552, 596, 944, 1273, 1332
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	7 cut(s)	41, 93, 549, 593, 941, 1270, 1329
BstMCI	CGRYCG	1 cut(s)	96
BstMWI	GCNNNNNNNGC	4 cut(s)	314, 515, 979, 1025
BstNI	CCWGG	1 cut(s)	1205
BstNSI	RCATGY	3 cut(s)	202, 321, 1492
BstPI	GGTNACC	1 cut(s)	1048
BstSCI	CCNGG	2 cut(s)	212, 1203
BstSFI	CTRYAG	1 cut(s)	1405
BstV1I	GCAGC	3 cut(s)	969, 1195, 1297
BstX2I	RGATCY	3 cut(s)	41, 1270, 1329
BstYI	RGATCY	3 cut(s)	41, 1270, 1329
BsuRI	GGCC	2 cut(s)	25, 758
BtgI	CCRYGG	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	932
BtsCI	GGATG	4 cut(s)	112, 308, 1164, 1264
BtsIMutI	CAGTG	3 cut(s)	271, 747, 1229
Cac8I	GCNNGC	1 cut(s)	1161
CfoI	GCGC	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	65
Csp6I	GTAC	6 cut(s)	386, 425, 491, 804, 1094, 1114
CviQI	GTAC	6 cut(s)	386, 425, 491, 804, 1094, 1114
DdeI	CTNAG	4 cut(s)	37, 1064, 1169, 1274
DpnI	GATC	7 cut(s)	43, 95, 551, 595, 943, 1272, 1331
DpnII	GATC	7 cut(s)	41, 93, 549, 593, 941, 1270, 1329
EaeI	YGGCCR	1 cut(s)	756
Eam1104I	CTCTTC	2 cut(s)	980, 1378
EarI	CTCTTC	2 cut(s)	980, 1378
Eco130I	CCWWGG	2 cut(s)	26, 312
Eco47I	GGWCC	1 cut(s)	65
Eco72I	CACGTG	1 cut(s)	394
Eco91I	GGTNACC	1 cut(s)	1048
EcoO65I	GGTNACC	1 cut(s)	1048
EcoRI	GAATTC	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	1203
EcoT14I	CCWWGG	2 cut(s)	26, 312
EcoT22I	ATGCAT	1 cut(s)	796
ErhI	CCWWGG	2 cut(s)	26, 312
FaqI	GGGAC	2 cut(s)	95, 290
FbaI	TGATCA	1 cut(s)	549
Fnu4HI	GCNGC	3 cut(s)	983, 1209, 1311
FokI	GGATG	4 cut(s)	119, 295, 1151, 1251
Fsp4HI	GCNGC	3 cut(s)	983, 1209, 1311
FspBI	CTAG	3 cut(s)	326, 1016, 1346
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	3 cut(s)	983, 1209, 1311
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	25, 758
HapII	CCGG	6 cut(s)	214, 223, 510, 875, 1268, 1362
HhaI	GCGC	1 cut(s)	157
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HinfI	GANTC	3 cut(s)	217, 1140, 1422
HpaII	CCGG	6 cut(s)	214, 223, 510, 875, 1268, 1362
HphI	GGTGA	2 cut(s)	467, 1437
Hpy166II	GTNNAC	1 cut(s)	806
Hpy188I	TCNGA	7 cut(s)	406, 582, 941, 1067, 1172, 1359, 1382
Hpy188III	TCNNGA	3 cut(s)	341, 1133, 1268
Hpy8I	GTNNAC	1 cut(s)	806
Hpy99I	CGWCG	1 cut(s)	916
HpyAV	CCTTC	5 cut(s)	347, 722, 970, 1005, 1404
HpyCH4III	ACNGT	3 cut(s)	188, 194, 547
HpyCH4IV	ACGT	2 cut(s)	393, 924
HpyF10VI	GCNNNNNNNGC	4 cut(s)	314, 515, 979, 1025
HpyF3I	CTNAG	4 cut(s)	37, 1064, 1169, 1274
HpySE526I	ACGT	2 cut(s)	393, 924
HspAI	GCGC	1 cut(s)	155
Kpn2I	TCCGGA	1 cut(s)	1267
Ksp22I	TGATCA	1 cut(s)	549
Kzo9I	GATC	7 cut(s)	41, 93, 549, 593, 941, 1270, 1329
LguI	GCTCTTC	2 cut(s)	980, 1378
LmnI	GCTCC	3 cut(s)	13, 529, 1364
Lsp1109I	GCAGC	3 cut(s)	969, 1195, 1297
LweI	GCATC	6 cut(s)	317, 541, 612, 781, 909, 1273
MaeI	CTAG	3 cut(s)	326, 1016, 1346
MaeII	ACGT	2 cut(s)	393, 924
MaeIII	GTNAC	3 cut(s)	188, 194, 1048
MalI	GATC	7 cut(s)	43, 95, 551, 595, 943, 1272, 1331
MboI	GATC	7 cut(s)	41, 93, 549, 593, 941, 1270, 1329
MboII	GAAGA	4 cut(s)	284, 967, 1395, 1434
MflI	RGATCY	3 cut(s)	41, 1270, 1329
MhlI	GDGCHC	1 cut(s)	10
MlsI	TGGCCA	1 cut(s)	758
MluNI	TGGCCA	1 cut(s)	758
MlyI	GAGTC	1 cut(s)	1431
MmeI	TCCRAC	1 cut(s)	749
Mox20I	TGGCCA	1 cut(s)	758
Mph1103I	ATGCAT	1 cut(s)	796
MroI	TCCGGA	1 cut(s)	1267
MscI	TGGCCA	1 cut(s)	758
MseI	TTAA	6 cut(s)	371, 503, 1214, 1257, 1304, 1476
MslI	CAYNNNNRTG	3 cut(s)	657, 752, 1007
Msp20I	TGGCCA	1 cut(s)	758
MspA1I	CMGCKG	2 cut(s)	178, 982
MspI	CCGG	6 cut(s)	214, 223, 510, 875, 1268, 1362
MspR9I	CCNGG	2 cut(s)	214, 1205
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	1205
MwoI	GCNNNNNNNGC	4 cut(s)	314, 515, 979, 1025
NciI	CCSGG	1 cut(s)	214
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	7 cut(s)	41, 93, 549, 593, 941, 1270, 1329
NlaIV	GGNNCC	1 cut(s)	43
NsiI	ATGCAT	1 cut(s)	796
NspI	RCATGY	3 cut(s)	202, 321, 1492
PciI	ACATGT	1 cut(s)	1488
PciSI	GCTCTTC	2 cut(s)	980, 1378
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	2 cut(s)	217, 1140
PkrI	GCNGC	3 cut(s)	984, 1210, 1312
Ple19I	CGATCG	1 cut(s)	96
PleI	GAGTC	1 cut(s)	1430
PmaCI	CACGTG	1 cut(s)	394
PmlI	CACGTG	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	1430
Ppu21I	YACGTR	1 cut(s)	394
PscI	ACATGT	1 cut(s)	1488
Psp6I	CCWGG	1 cut(s)	1203
PspCI	CACGTG	1 cut(s)	394
PspEI	GGTNACC	1 cut(s)	1048
PspGI	CCWGG	1 cut(s)	1203
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	65
PsuI	RGATCY	3 cut(s)	41, 1270, 1329
PvuI	CGATCG	1 cut(s)	96
PvuII	CAGCTG	2 cut(s)	178, 982
RsaI	GTAC	6 cut(s)	387, 426, 492, 805, 1095, 1115
RsaNI	GTAC	6 cut(s)	386, 425, 491, 804, 1094, 1114
RseI	CAYNNNNRTG	3 cut(s)	657, 752, 1007
SapI	GCTCTTC	2 cut(s)	980, 1378
SaqAI	TTAA	6 cut(s)	371, 503, 1214, 1257, 1304, 1476
SatI	GCNGC	3 cut(s)	983, 1209, 1311
Sau3AI	GATC	7 cut(s)	41, 93, 549, 593, 941, 1270, 1329
Sau96I	GGNCC	1 cut(s)	65
ScaI	AGTACT	2 cut(s)	387, 1115
SchI	GAGTC	1 cut(s)	1431
ScrFI	CCNGG	2 cut(s)	214, 1205
SduI	GDGCHC	1 cut(s)	10
SfaNI	GCATC	6 cut(s)	317, 541, 612, 781, 909, 1273
SfcI	CTRYAG	1 cut(s)	1405
SinI	GGWCC	1 cut(s)	65
SmiMI	CAYNNNNRTG	3 cut(s)	657, 752, 1007
SspI	AATATT	1 cut(s)	540
SspMI	CTAG	3 cut(s)	326, 1016, 1346
StyD4I	CCNGG	2 cut(s)	212, 1203
StyI	CCWWGG	2 cut(s)	26, 312
TaaI	ACNGT	3 cut(s)	188, 194, 547
TaiI	ACGT	2 cut(s)	396, 927
TaqI	TCGA	5 cut(s)	92, 160, 630, 1282, 1420
TatI	WGTACW	3 cut(s)	385, 803, 1113
TfiI	GAWTC	2 cut(s)	217, 1140
Tru1I	TTAA	6 cut(s)	371, 503, 1214, 1257, 1304, 1476
Tru9I	TTAA	6 cut(s)	371, 503, 1214, 1257, 1304, 1476
TscAI	CASTG	3 cut(s)	278, 754, 1236
TseI	GCWGC	3 cut(s)	982, 1208, 1310
TspDTI	ATGAA	6 cut(s)	161, 274, 284, 428, 471, 766
TspGWI	ACGGA	2 cut(s)	918, 1152
TspRI	CASTG	3 cut(s)	278, 754, 1236
VpaK11BI	GGWCC	1 cut(s)	65
XapI	RAATTY	2 cut(s)	558, 693
XceI	RCATGY	3 cut(s)	202, 321, 1492
XspI	CTAG	3 cut(s)	326, 1016, 1346
ZrmI	AGTACT	2 cut(s)	387, 1115
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.