Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0015181

Physical Location & Seq

Genomic Coordinates Reverse (-)

7849309 .. 7851695

Gene Structure 2387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0051100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAAGAAATACGTAAGGCTGCTTTAGCTTACTACAATAACTTGCCAAAGGATCTACAGAAGCTGGCATCTACAAAATTCAAAGAAATTGATTCAAGTGGTGATGGCACAATAAGCATCGAGGAATTCAAGAAGAGTATGGGAAGCTCTTTCCACAACAACCCTGTGATCATGGAGAGAAGCTTCAAGGAGCTGGACAACAACGGAGACCGCAAGTTGGATTTCAAGGAGTACATCATTCTTTACTATCTTGTAGAGAGCGGTAGGGTGCTGATTTATTGTGCGGGCAATGGATGTAAGGCCGCACCTTTTCTCAAGGGACTCTATTTCACTTGCGTCGACTGCTTCCACCATAACAAAAATGGAACTTTCGATCTCTGCACCTCTTGCTACCACAATGCAGACTTTGATCATGAACACAAAAACTTTGTCGATAACCATGTGTTACTTCGTTCCAAGGCTGCTTGTTGTGAATCCACATCTGAGCCATGCTCTCCTGGGTCTGATTCTCAGTCCAATCAAGTCAGTCGAACTGGATCAAAGGGAGTGCCAGTTAATCGATCTGGATCAAAGAGGAGGGCAGTACTTGAAGCAATCAAATCTGGAGCGAGTGTTGCACGTGCAGTAGGAAATATGGCTTCTGATGTTACTTCTTGCAGTATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006629 GO:0006723 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016491 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0042175 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043446 GO:0043447 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0055114 GO:0071704 GO:0071944 GO:0098827 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

222

Amino Acids

24.5

Weight (kDa)

8.0

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	25 - 83	4.7e-09	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57800
fragaria_vesca	FvH4_4g10190
malus_domestica	MD13G1273200.v1.1
prunus_persica	Prupe.1G098000_v2.0.a1
pyrus_communis	pycom13g28860
rosa_chinensis	RchiOBHm_Chr4g0404991
rosa_laevigata	RLG00000008887
rosa_multiflora	Rmu_ssc0000127.1_g000007
rosa_roxburghii	Rroxscaffold_5G00349160
rosa_rugosa	Rorug04G0051000 Rorug04G0051100
rosa_samantha	Rh4AG126700 Rh4BG120900 Rh4CG134900 Rh4DG121200
rosa_wichuraiana	Rw4G010300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	261
AccI	GTMKAC	1 cut(s)	339
AciI	CCGC	4 cut(s)	211, 261, 284, 303
AclWI	GGATC	3 cut(s)	60, 544, 574
AcsI	RAATTY	2 cut(s)	77, 125
AcvI	CACGTG	1 cut(s)	620
AfaI	GTAC	2 cut(s)	233, 585
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	6 cut(s)	82, 96, 130, 187, 226, 590
AjnI	CCWGG	1 cut(s)	496
AluBI	AGCT	5 cut(s)	29, 64, 147, 183, 193
AluI	AGCT	5 cut(s)	29, 64, 147, 183, 193
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	3 cut(s)	60, 544, 574
AlwNI	CAGNNNCTG	1 cut(s)	64
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	2 cut(s)	20, 461
ApoI	RAATTY	2 cut(s)	77, 125
ArsI	GACNNNNNNTTYG	2 cut(s)	414, 446
AsuHPI	GGTGA	1 cut(s)	113
BbrPI	CACGTG	1 cut(s)	620
BbvI	GCAGC	2 cut(s)	7, 448
BccI	CCATC	1 cut(s)	98
BciT130I	CCWGG	1 cut(s)	498
BclI	TGATCA	2 cut(s)	168, 409
BcoDI	GTCTC	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	56
BisI	GCNGC	3 cut(s)	21, 303, 462
BlsI	GCNGC	3 cut(s)	22, 304, 463
BmcAI	AGTACT	1 cut(s)	585
Bme1390I	CCNGG	1 cut(s)	498
BmrFI	CCNGG	1 cut(s)	498
BmsI	GCATC	2 cut(s)	77, 126
BplI	GAGNNNNNCTC	2 cut(s)	476, 508
BpmI	CTGGAG	1 cut(s)	624
BpuEI	CTTGAG	1 cut(s)	299
Bsa29I	ATCGAT	1 cut(s)	559
BsaAI	YACGTR	2 cut(s)	14, 620
BsaBI	GATNNNNATC	1 cut(s)	565
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	456, 497
BsaXI	ACNNNNNCTCC	4 cut(s)	537, 567, 597, 627
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	2 cut(s)	538, 551
Bse3DI	GCAATG	1 cut(s)	295
Bse8I	GATNNNNATC	1 cut(s)	565
BseBI	CCWGG	1 cut(s)	498
BseCI	ATCGAT	1 cut(s)	559
BseDI	CCNNGG	2 cut(s)	456, 497
BseGI	GGATG	1 cut(s)	299
BseJI	GATNNNNATC	1 cut(s)	565
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	2 cut(s)	474, 524
BseNI	ACTGG	2 cut(s)	538, 551
BseRI	GAGGAG	1 cut(s)	589
BseXI	GCAGC	2 cut(s)	7, 448
BsgI	GTGCAG	2 cut(s)	364, 642
BshFI	GGCC	1 cut(s)	302
BshVI	ATCGAT	1 cut(s)	559
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	333
BsnI	GGCC	1 cut(s)	302
Bso31I	GGTCTC	1 cut(s)	201
Bsp143I	GATC	7 cut(s)	52, 168, 373, 409, 536, 560, 566
BspACI	CCGC	4 cut(s)	211, 261, 284, 303
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	2 cut(s)	475, 523
BspDI	ATCGAT	1 cut(s)	559
BspHI	TCATGA	1 cut(s)	412
BspPI	GGATC	3 cut(s)	60, 544, 574
BspTNI	GGTCTC	1 cut(s)	201
BsrBI	CCGCTC	1 cut(s)	261
BsrDI	GCAATG	1 cut(s)	295
BsrI	ACTGG	2 cut(s)	538, 551
BssECI	CCNNGG	2 cut(s)	456, 497
BssMI	GATC	7 cut(s)	52, 168, 373, 409, 536, 560, 566
BssT1I	CCWWGG	1 cut(s)	456
Bst2UI	CCWGG	1 cut(s)	498
Bst6I	CTCTTC	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	387
BstBAI	YACGTR	2 cut(s)	14, 620
BstC8I	GCNNGC	2 cut(s)	66, 286
BstDEI	CTNAG	2 cut(s)	483, 510
BstF5I	GGATG	1 cut(s)	299
BstKTI	GATC	7 cut(s)	55, 171, 376, 412, 539, 563, 569
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	7 cut(s)	52, 168, 373, 409, 536, 560, 566
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 114, 342, 387, 614
BstNI	CCWGG	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	56
BstSNI	TACGTA	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	7, 448
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
Bsu15I	ATCGAT	1 cut(s)	559
BsuRI	GGCC	1 cut(s)	302
BsuTUI	ATCGAT	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	299
Cac8I	GCNNGC	2 cut(s)	66, 286
CaiI	CAGNNNCTG	1 cut(s)	64
CciI	TCATGA	1 cut(s)	412
ClaI	ATCGAT	1 cut(s)	559
CseI	GACGC	1 cut(s)	325
Csp6I	GTAC	2 cut(s)	232, 584
CviAII	CATG	5 cut(s)	172, 413, 440, 489, 664
CviQI	GTAC	2 cut(s)	232, 584
DdeI	CTNAG	2 cut(s)	483, 510
DpnI	GATC	7 cut(s)	54, 170, 375, 411, 538, 562, 568
DpnII	GATC	7 cut(s)	52, 168, 373, 409, 536, 560, 566
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco105I	TACGTA	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	456
Eco31I	GGTCTC	1 cut(s)	201
Eco72I	CACGTG	1 cut(s)	620
EcoRI	GAATTC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	5 cut(s)	175, 416, 443, 492, 667
FaiI	YATR	8 cut(s)	140, 173, 354, 414, 441, 490, 635, 665
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	5 cut(s)	171, 412, 439, 488, 663
FauI	CCCGC	1 cut(s)	277
FbaI	TGATCA	2 cut(s)	168, 409
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	3 cut(s)	21, 303, 462
FokI	GGATG	1 cut(s)	306
Fsp4HI	GCNGC	3 cut(s)	21, 303, 462
GluI	GCNGC	3 cut(s)	21, 303, 462
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	1 cut(s)	302
HgaI	GACGC	1 cut(s)	325
Hin1II	CATG	5 cut(s)	175, 416, 443, 492, 667
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	181
HinfI	GANTC	4 cut(s)	92, 321, 473, 506
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	3 cut(s)	484, 505, 643
Hpy188III	TCNNGA	4 cut(s)	130, 413, 564, 603
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	1 cut(s)	341
HpyCH4IV	ACGT	2 cut(s)	13, 619
HpyCH4V	TGCA	5 cut(s)	381, 401, 617, 623, 657
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 114, 342, 387, 614
HpyF3I	CTNAG	2 cut(s)	483, 510
HpySE526I	ACGT	2 cut(s)	13, 619
Hsp92II	CATG	5 cut(s)	175, 416, 443, 492, 667
Ksp22I	TGATCA	2 cut(s)	168, 409
Kzo9I	GATC	7 cut(s)	52, 168, 373, 409, 536, 560, 566
LmnI	GCTCC	2 cut(s)	190, 605
LpnPI	CCDG	9 cut(s)	50, 177, 179, 483, 510, 519, 549, 564, 588
Lsp1109I	GCAGC	2 cut(s)	7, 448
LweI	GCATC	2 cut(s)	77, 126
MaeII	ACGT	2 cut(s)	13, 619
MaeIII	GTNAC	2 cut(s)	444, 646
MalI	GATC	7 cut(s)	54, 170, 375, 411, 538, 562, 568
MbiI	CCGCTC	1 cut(s)	261
MboI	GATC	7 cut(s)	52, 168, 373, 409, 536, 560, 566
MboII	GAAGA	2 cut(s)	17, 145
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	3 cut(s)	77, 87, 125
MlyI	GAGTC	1 cut(s)	315
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	4 cut(s)	115, 394, 567, 570
MseI	TTAA	1 cut(s)	555
MspR9I	CCNGG	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	5 cut(s)	26, 114, 342, 387, 614
NdeII	GATC	7 cut(s)	52, 168, 373, 409, 536, 560, 566
NlaIII	CATG	5 cut(s)	175, 416, 443, 492, 667
PagI	TCATGA	1 cut(s)	412
PfeI	GAWTC	3 cut(s)	92, 473, 506
PkrI	GCNGC	3 cut(s)	22, 304, 463
PleI	GAGTC	1 cut(s)	315
PmaCI	CACGTG	1 cut(s)	620
PmlI	CACGTG	1 cut(s)	620
PpsI	GAGTC	1 cut(s)	315
Ppu21I	YACGTR	2 cut(s)	14, 620
Psp6I	CCWGG	1 cut(s)	496
PspCI	CACGTG	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	496
PstNI	CAGNNNCTG	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	52
RsaI	GTAC	2 cut(s)	233, 585
RsaNI	GTAC	2 cut(s)	232, 584
SalI	GTCGAC	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	3 cut(s)	21, 303, 462
Sau3AI	GATC	7 cut(s)	52, 168, 373, 409, 536, 560, 566
ScaI	AGTACT	1 cut(s)	585
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	1 cut(s)	498
SetI	ASST	9 cut(s)	16, 31, 66, 149, 185, 195, 310, 386, 622
SfaNI	GCATC	2 cut(s)	77, 126
SfcI	CTRYAG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SnaBI	TACGTA	1 cut(s)	14
Sse9I	AATT	3 cut(s)	77, 87, 125
SsiI	CCGC	4 cut(s)	211, 261, 284, 303
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	1 cut(s)	456
TaiI	ACGT	2 cut(s)	16, 622
TaqI	TCGA	6 cut(s)	120, 339, 372, 432, 529, 559
TasI	AATT	3 cut(s)	77, 87, 125
TatI	WGTACW	2 cut(s)	231, 583
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	3 cut(s)	92, 473, 506
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TseI	GCWGC	2 cut(s)	20, 461
TspDTI	ATGAA	1 cut(s)	429
TspGWI	ACGGA	1 cut(s)	219
XapI	RAATTY	2 cut(s)	77, 125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	359
XmiI	GTMKAC	1 cut(s)	339
ZrmI	AGTACT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.