Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015181

Physical Location & Seq

Genomic Coordinates Forward (+)

41881130 .. 41886131

Gene Structure 5002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008887

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGATTTGGAAAGCCTTTTACTCGATCGTCTATGAGGATGTCCCCCCTATGCAAAGCTGGTGTCTCCATGTTCTCATCATCTGTGGGCTTCGAGGGCTAATTCATCAGCTATGGAACAGTTACACTAACATGCTTTTCCTAATCCGGAATCGCCGGATTATCAAACAAGGTGTTGATTTCAAGCAGATTGATACAGAATGGCACTGGGACAATTTCATAATTCTTCAAGGTTTGATTGCATCCATGGCATGTTATCTTGTTCCATACCTTCAAGAGCTTCCTGCGTGGAATGCAAAAGGCTTAATTACAAGCATAGTACTCCACGTGGGAGTTTCAGAGCCTTTATATTATTGGGTACATAGACAATTTCATGCCAGCGACTTTTATCAAAATTACCACTCCTTTCACCATTCATCTCCAGTACCCCAACCTTTAACAGCTGGAAATGCAACATTTATGGAGCATCTAATATTGACTGTCATCATTGGAATTCCAATTCTGGGTTCCACTCTGATGGGTTTTGGATCAATCGGCATCATCTACGGCTACTCGTCGGTATTCGATTTTTTGAGGTGCTTGGGGCATAGCAATGTTGAAGTTATGTCTCATAAACTATATGAGAGAATTCCATTTCTCAAATACCTGCTCTATACTCCCACATACCACGCCCTACACCACACTGAAATGGCCACCAACTTCTGCCTTTTCATGCCTCTCTTTGATGCATTGGGGAGTACACTAAACCAAAAGTCTTGGGAATTACACAAGGAGATGAGCTTAAAAGCAGGAGTAAATGGAAATGTACCGGATTTTGTTTTCCTTGCTCATGTGGTGGATTTGTCGTCGGCGATGCATGTTCCGTTTGTTTTCCGATCATTTGCTTCAATTCCCTTCTCATTTAGGCTCTTTCAGCTGCCGTATTATCCTTTTGGCATTGTGGTGTGTCTGGCAATGTGGGCATGGGCAAAAACATTTTTGATTACCTTTTACAACCTCAGAGGTCGGTTGCACCAGACTTGGGCTGTACCCAGATTTGGCTTTCAGTATTTTTTGCCATTTGCTCTAAACGGAATCAATAATCAAATAGAGCAAGCCATCCTCAGAGCTGACAAGTTGGGGGTCAAGGTCATCAGCCTGGCTGCATTAAATAAGAACGAAGCACTGAATGGGGGAGGAACGCTGTTTGTTAATAAGCATCCGGATCTTAGCGTTCGAGTTGTGCATGGGAACACCTTAACTGCTGCTGTTATTCTCAATGAGATCCCAAAGGATTGCCAAGAGGTGTTTCTGACCGGAGCAACTTCCAAGCTCGGAAGAGCCATTGCTCTCTACCTCTGTAGAAGGAAAGTTCGAGTCCTTGTAAGTATATTTTCTTCACCTTTCAGTTTCAGTTTAGACTTTAGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006629 GO:0006723 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016491 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0042175 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043446 GO:0043447 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0055114 GO:0071704 GO:0071944 GO:0098827 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

470

Amino Acids

53.57

Weight (kDa)

9.05

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	106 - 246	2.9e-20	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57800
fragaria_vesca	FvH4_4g10190
malus_domestica	MD13G1273200.v1.1
prunus_persica	Prupe.1G098000_v2.0.a1
pyrus_communis	pycom13g28860
rosa_chinensis	RchiOBHm_Chr4g0404991
rosa_laevigata	RLG00000008887
rosa_multiflora	Rmu_ssc0000127.1_g000007
rosa_roxburghii	Rroxscaffold_5G00349160
rosa_rugosa	Rorug04G0051000 Rorug04G0051100
rosa_samantha	Rh4AG126700 Rh4BG120900 Rh4CG134900 Rh4DG121200
rosa_wichuraiana	Rw4G010300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	651
AccIII	TCCGGA	2 cut(s)	144, 1198
AclWI	GGATC	3 cut(s)	532, 1209, 1255
AcoI	YGGCCR	1 cut(s)	687
AcsI	RAATTY	2 cut(s)	489, 624
AcvI	CACGTG	1 cut(s)	325
AfaI	GTAC	6 cut(s)	318, 357, 423, 736, 804, 1026
AfiI	CCNNNNNNNGG	3 cut(s)	500, 1018, 1034
AgsI	TTSAA	5 cut(s)	181, 227, 272, 596, 885
AjnI	CCWGG	1 cut(s)	1134
AjuI	GAANNNNNNNTTGG	4 cut(s)	487, 519, 1269, 1301
AluBI	AGCT	8 cut(s)	57, 109, 277, 440, 777, 913, 1106, 1309
AluI	AGCT	8 cut(s)	57, 109, 277, 440, 777, 913, 1106, 1309
Alw26I	GTCTC	2 cut(s)	68, 609
AlwI	GGATC	3 cut(s)	532, 1209, 1255
Aor13HI	TCCGGA	2 cut(s)	144, 1198
AoxI	GGCC	1 cut(s)	687
ApeKI	GCWGC	3 cut(s)	913, 1139, 1241
ApoI	RAATTY	2 cut(s)	489, 624
ArsI	GACNNNNNNTTYG	2 cut(s)	46, 78
AsuHPI	GGTGA	2 cut(s)	398, 1368
BalI	TGGCCA	1 cut(s)	689
BarI	GAAGNNNNNNTAC	2 cut(s)	1357, 1389
BbrPI	CACGTG	1 cut(s)	325
BbvI	GCAGC	3 cut(s)	900, 1126, 1228
BccI	CCATC	2 cut(s)	508, 1103
BceAI	ACGGC	2 cut(s)	559, 901
BciT130I	CCWGG	1 cut(s)	1136
BcoDI	GTCTC	2 cut(s)	68, 609
BfmI	CTRYAG	1 cut(s)	1336
BfuAI	ACCTGC	1 cut(s)	651
BisI	GCNGC	3 cut(s)	914, 1140, 1242
BlsI	GCNGC	3 cut(s)	915, 1141, 1243
BmcAI	AGTACT	1 cut(s)	318
Bme1390I	CCNGG	1 cut(s)	1136
BmiI	GGNNCC	1 cut(s)	505
BmrFI	CCNGG	1 cut(s)	1136
BmrI	ACTGGG	1 cut(s)	214
BmsI	GCATC	6 cut(s)	248, 472, 543, 712, 840, 1204
BmuI	ACTGGG	1 cut(s)	214
BpmI	CTGGAG	1 cut(s)	402
BsaAI	YACGTR	1 cut(s)	325
BsaJI	CCNNGG	1 cut(s)	243
BsaWI	WCCGGW	4 cut(s)	144, 805, 1198, 1292
Bsc4I	CCNNNNNNNGG	3 cut(s)	500, 1018, 1034
Bse1I	ACTGG	2 cut(s)	209, 419
Bse3DI	GCAATG	3 cut(s)	595, 957, 1320
BseAI	TCCGGA	2 cut(s)	144, 1198
BseBI	CCWGG	1 cut(s)	1136
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	4 cut(s)	43, 239, 1095, 1195
BseLI	CCNNNNNNNGG	3 cut(s)	500, 1018, 1034
BseMI	GCAATG	3 cut(s)	595, 957, 1320
BseMII	CTCAG	2 cut(s)	1009, 1114
BseNI	ACTGG	2 cut(s)	209, 419
BseXI	GCAGC	3 cut(s)	900, 1126, 1228
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	689
BsiEI	CGRYCG	1 cut(s)	27
BsiSI	CCGG	5 cut(s)	145, 154, 806, 1199, 1293
BslFI	GGGAC	2 cut(s)	26, 221
BslI	CCNNNNNNNGG	3 cut(s)	500, 1018, 1034
BsmAI	GTCTC	2 cut(s)	68, 609
BsmFI	GGGAC	2 cut(s)	26, 221
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	1 cut(s)	689
Bsp13I	TCCGGA	2 cut(s)	144, 1198
Bsp143I	GATC	5 cut(s)	24, 524, 872, 1201, 1260
Bsp19I	CCATGG	1 cut(s)	243
BspANI	GGCC	1 cut(s)	689
BspCNI	CTCAG	2 cut(s)	1008, 1113
BspEI	TCCGGA	2 cut(s)	144, 1198
BspLI	GGNNCC	1 cut(s)	505
BspMI	ACCTGC	1 cut(s)	651
BspPI	GGATC	3 cut(s)	532, 1209, 1255
BspQI	GCTCTTC	1 cut(s)	1309
BsrDI	GCAATG	3 cut(s)	595, 957, 1320
BsrI	ACTGG	2 cut(s)	209, 419
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	5 cut(s)	24, 524, 872, 1201, 1260
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	1136
Bst4CI	ACNGT	2 cut(s)	119, 478
Bst6I	CTCTTC	1 cut(s)	1309
BstBAI	YACGTR	1 cut(s)	325
BstC8I	GCNNGC	2 cut(s)	376, 1092
BstDEI	CTNAG	3 cut(s)	995, 1100, 1205
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	4 cut(s)	43, 239, 1095, 1195
BstKTI	GATC	5 cut(s)	27, 527, 875, 1204, 1263
BstMAI	GTCTC	2 cut(s)	68, 609
BstMBI	GATC	5 cut(s)	24, 524, 872, 1201, 1260
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	6 cut(s)	94, 245, 290, 446, 910, 956
BstNI	CCWGG	1 cut(s)	1136
BstNSI	RCATGY	3 cut(s)	133, 252, 857
BstSCI	CCNGG	1 cut(s)	1134
BstSFI	CTRYAG	1 cut(s)	1336
BstV1I	GCAGC	3 cut(s)	900, 1126, 1228
BstX2I	RGATCY	2 cut(s)	1201, 1260
BstXI	CCANNNNNNTGG	1 cut(s)	514
BstYI	RGATCY	2 cut(s)	1201, 1260
BsuRI	GGCC	1 cut(s)	689
BtgI	CCRYGG	1 cut(s)	243
BtgZI	GCGATG	1 cut(s)	863
BtsCI	GGATG	4 cut(s)	43, 239, 1095, 1195
BtsIMutI	CAGTG	3 cut(s)	202, 678, 1160
BveI	ACCTGC	1 cut(s)	651
Cac8I	GCNNGC	2 cut(s)	376, 1092
Csp6I	GTAC	6 cut(s)	317, 356, 422, 735, 803, 1025
CviQI	GTAC	6 cut(s)	317, 356, 422, 735, 803, 1025
DdeI	CTNAG	3 cut(s)	995, 1100, 1205
DpnI	GATC	5 cut(s)	26, 526, 874, 1203, 1262
DpnII	GATC	5 cut(s)	24, 524, 872, 1201, 1260
EaeI	YGGCCR	1 cut(s)	687
Eam1104I	CTCTTC	1 cut(s)	1309
EarI	CTCTTC	1 cut(s)	1309
Eco130I	CCWWGG	1 cut(s)	243
Eco72I	CACGTG	1 cut(s)	325
EcoRI	GAATTC	2 cut(s)	489, 624
EcoRII	CCWGG	1 cut(s)	1134
EcoT14I	CCWWGG	1 cut(s)	243
EcoT22I	ATGCAT	2 cut(s)	727, 855
ErhI	CCWWGG	1 cut(s)	243
FaqI	GGGAC	2 cut(s)	26, 221
Fnu4HI	GCNGC	3 cut(s)	914, 1140, 1242
FokI	GGATG	4 cut(s)	50, 226, 1082, 1182
Fsp4HI	GCNGC	3 cut(s)	914, 1140, 1242
GluI	GCNGC	3 cut(s)	914, 1140, 1242
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	1 cut(s)	689
HapII	CCGG	5 cut(s)	145, 154, 806, 1199, 1293
HinfI	GANTC	3 cut(s)	148, 1071, 1353
HpaII	CCGG	5 cut(s)	145, 154, 806, 1199, 1293
HphI	GGTGA	2 cut(s)	398, 1368
Hpy166II	GTNNAC	1 cut(s)	737
Hpy188I	TCNGA	7 cut(s)	337, 513, 872, 998, 1103, 1290, 1313
Hpy188III	TCNNGA	3 cut(s)	145, 272, 1199
Hpy8I	GTNNAC	1 cut(s)	737
Hpy99I	CGWCG	2 cut(s)	556, 847
HpyAV	CCTTC	3 cut(s)	278, 901, 1335
HpyCH4III	ACNGT	2 cut(s)	119, 478
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	9 cut(s)	52, 239, 293, 449, 725, 853, 1009, 1142, 1222
HpyF10VI	GCNNNNNNNGC	6 cut(s)	94, 245, 290, 446, 910, 956
HpyF3I	CTNAG	3 cut(s)	995, 1100, 1205
HpySE526I	ACGT	1 cut(s)	324
Kpn2I	TCCGGA	2 cut(s)	144, 1198
Kzo9I	GATC	5 cut(s)	24, 524, 872, 1201, 1260
LguI	GCTCTTC	1 cut(s)	1309
LmnI	GCTCC	2 cut(s)	460, 1295
Lsp1109I	GCAGC	3 cut(s)	900, 1126, 1228
LweI	GCATC	6 cut(s)	248, 472, 543, 712, 840, 1204
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	5 cut(s)	26, 526, 874, 1203, 1262
MboI	GATC	5 cut(s)	24, 524, 872, 1201, 1260
MboII	GAAGA	3 cut(s)	215, 1326, 1365
MflI	RGATCY	2 cut(s)	1201, 1260
MlsI	TGGCCA	1 cut(s)	689
MluNI	TGGCCA	1 cut(s)	689
MlyI	GAGTC	1 cut(s)	1362
Mox20I	TGGCCA	1 cut(s)	689
Mph1103I	ATGCAT	2 cut(s)	727, 855
MroI	TCCGGA	2 cut(s)	144, 1198
MscI	TGGCCA	1 cut(s)	689
MseI	TTAA	6 cut(s)	302, 434, 779, 1145, 1188, 1235
MslI	CAYNNNNRTG	5 cut(s)	128, 512, 588, 683, 938
Msp20I	TGGCCA	1 cut(s)	689
MspA1I	CMGCKG	2 cut(s)	440, 913
MspI	CCGG	5 cut(s)	145, 154, 806, 1199, 1293
MspR9I	CCNGG	1 cut(s)	1136
Mva1269I	GAATGC	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	1136
MwoI	GCNNNNNNNGC	6 cut(s)	94, 245, 290, 446, 910, 956
NcoI	CCATGG	1 cut(s)	243
NdeII	GATC	5 cut(s)	24, 524, 872, 1201, 1260
NlaIV	GGNNCC	1 cut(s)	505
NsiI	ATGCAT	2 cut(s)	727, 855
NspI	RCATGY	3 cut(s)	133, 252, 857
PciSI	GCTCTTC	1 cut(s)	1309
PctI	GAATGC	1 cut(s)	295
PfeI	GAWTC	2 cut(s)	148, 1071
PkrI	GCNGC	3 cut(s)	915, 1141, 1243
Ple19I	CGATCG	1 cut(s)	27
PleI	GAGTC	1 cut(s)	1361
PmaCI	CACGTG	1 cut(s)	325
PmlI	CACGTG	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	1361
Ppu21I	YACGTR	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	1134
PspCI	CACGTG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	1134
PspN4I	GGNNCC	1 cut(s)	505
PsuI	RGATCY	2 cut(s)	1201, 1260
PvuI	CGATCG	1 cut(s)	27
PvuII	CAGCTG	2 cut(s)	440, 913
RsaI	GTAC	6 cut(s)	318, 357, 423, 736, 804, 1026
RsaNI	GTAC	6 cut(s)	317, 356, 422, 735, 803, 1025
RseI	CAYNNNNRTG	5 cut(s)	128, 512, 588, 683, 938
SapI	GCTCTTC	1 cut(s)	1309
SaqAI	TTAA	6 cut(s)	302, 434, 779, 1145, 1188, 1235
SatI	GCNGC	3 cut(s)	914, 1140, 1242
Sau3AI	GATC	5 cut(s)	24, 524, 872, 1201, 1260
ScaI	AGTACT	1 cut(s)	318
SchI	GAGTC	1 cut(s)	1362
ScrFI	CCNGG	1 cut(s)	1136
SfaNI	GCATC	6 cut(s)	248, 472, 543, 712, 840, 1204
SfcI	CTRYAG	1 cut(s)	1336
SmiMI	CAYNNNNRTG	5 cut(s)	128, 512, 588, 683, 938
SspI	AATATT	1 cut(s)	471
StyD4I	CCNGG	1 cut(s)	1134
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	119, 478
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	5 cut(s)	23, 91, 561, 1213, 1351
TatI	WGTACW	2 cut(s)	316, 734
TfiI	GAWTC	2 cut(s)	148, 1071
Tru1I	TTAA	6 cut(s)	302, 434, 779, 1145, 1188, 1235
Tru9I	TTAA	6 cut(s)	302, 434, 779, 1145, 1188, 1235
TscAI	CASTG	3 cut(s)	209, 685, 1167
TseI	GCWGC	3 cut(s)	913, 1139, 1241
TspDTI	ATGAA	5 cut(s)	92, 205, 359, 402, 697
TspGWI	ACGGA	2 cut(s)	849, 1083
TspRI	CASTG	3 cut(s)	209, 685, 1167
XapI	RAATTY	2 cut(s)	489, 624
XceI	RCATGY	3 cut(s)	133, 252, 857
ZrmI	AGTACT	1 cut(s)	318
Zsp2I	ATGCAT	2 cut(s)	727, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.