AT5G58030

Trafficking protein particle complex subunit 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015824
Physical Location & Seq
Reverse (-)
23486777 .. 23488620
1844 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58030.1

Sequence Viewer

Length: 588 bp
ATGATCGGAGTCGGGAAAATGAAACAGTACTCCAACGTCCTTGACAAGCCTCTCAGCAAAGGCAAGCAAGAGGTGAGCTTGACCGCATTTGCTTTCTTATTCTCGGAGCTCGTTCAGTACAATCAAACCCAGGTTGACAATATAGCTGAACTTGAAAGAAGACTAGAGGATGCTGGGTATGCAGTTGGATCTCGAGTTCTAGAGCTTCTTTGCAACCGGGAAAAGGGAAACAGAAGAGAGACACGGTTACTGGGAATTCTGTCTTTCGTTCACAGTACTGTGTGGAAAGTGTTGTTTGGAAAGGTTGCTGATTCACTTGAAAAAGGAACAGAACATGAAGATGAGTACATGATCAGTGAAAAGGAGCTTCTTGTTAACAGGTTCATTTCGATTCCAAAAGACATGGGAACATTCAACTGCGGAGCGTTTGTTGCTGGCATAGTGAAGGGAGTTCTGGATAACGCAGGGTTTCCTGCTGTGGTAACGGCTCATTTTGTACCCATTGAAGGACAACAACGTCCTCGAACTACTATTTTGATCAAGTTTGCTGATGAGGTGCTTAAGAGAGAGGCACGGCTAAGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

195

Amino Acids

21.86

Weight (kDa)

7.75

Isoelectric Point (pI)

29.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPP PF04051 30 - 182 2e-46 Transport protein particle (TRAPP) component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015824)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58030
fragaria_vesca FvH4_1g01170 FvH4_1g01170
malus_domestica MD02G1009800.v1.1
prunus_persica Prupe.7G260200_v2.0.a1 Prupe.7G260200_v2.0.a1
pyrus_communis pycom02g00850 pycom15g13890
rosa_chinensis RchiOBHm_Chr2g0085961
rosa_laevigata RLG00000015730
rosa_multiflora Rmu_ssc0000355.1_g000026
rosa_roxburghii Rroxscaffold_2G00154890
rosa_rugosa Rorug01G0464700
rosa_samantha Rh2AG013900
rosa_wichuraiana Rw2G001230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 516
AciI CCGC 2 cut(s) 84, 420
AclWI GGATC 1 cut(s) 196
AcsI RAATTY 1 cut(s) 255
AfaI GTAC 5 cut(s) 29, 119, 277, 347, 498
AfiI CCNNNNNNNGG 2 cut(s) 223, 506
AflII CTTAAG 1 cut(s) 560
AgsI TTSAA 4 cut(s) 155, 320, 415, 506
AjnI CCWGG 1 cut(s) 129
AloI GAACNNNNNNTCC 2 cut(s) 180, 212
AluBI AGCT 5 cut(s) 78, 109, 146, 205, 367
AluI AGCT 5 cut(s) 78, 109, 146, 205, 367
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 1 cut(s) 196
Ama87I CYCGRG 1 cut(s) 192
ApoI RAATTY 1 cut(s) 255
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 85
AvaI CYCGRG 1 cut(s) 192
BanII GRGCYC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 111
BceAI ACGGC 1 cut(s) 501
BciT130I CCWGG 1 cut(s) 131
BclI TGATCA 2 cut(s) 351, 537
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 2 cut(s) 164, 200
BfrI CTTAAG 1 cut(s) 560
BlpI GCTNAGC 1 cut(s) 578
BmcAI AGTACT 2 cut(s) 29, 277
Bme1390I CCNGG 2 cut(s) 131, 218
BmeT110I CYCGRG 1 cut(s) 192
BmrFI CCNGG 2 cut(s) 131, 218
BmrI ACTGGG 1 cut(s) 260
BmsI GCATC 1 cut(s) 160
BmuI ACTGGG 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 166
Bpu1102I GCTNAGC 1 cut(s) 578
BpuMI CCSGG 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 129
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 506
Bse1I ACTGG 1 cut(s) 255
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 2 cut(s) 223, 506
BseMII CTCAG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 255
BseYI CCCAGC 1 cut(s) 173
BsiHKAI GWGCWC 1 cut(s) 111
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 1 cut(s) 217
BslI CCNNNNNNNGG 2 cut(s) 223, 506
BsmAI GTCTC 1 cut(s) 233
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 4 cut(s) 3, 188, 351, 537
Bsp1720I GCTNAGC 1 cut(s) 578
BspACI CCGC 2 cut(s) 84, 420
BspCNI CTCAG 1 cut(s) 66
BspPI GGATC 1 cut(s) 196
BspTI CTTAAG 1 cut(s) 560
BsrI ACTGG 1 cut(s) 255
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 4 cut(s) 3, 188, 351, 537
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 4 cut(s) 27, 246, 275, 280
Bst6I CTCTTC 1 cut(s) 229
BstAFI CTTAAG 1 cut(s) 560
BstC8I GCNNGC 2 cut(s) 65, 436
BstDEI CTNAG 2 cut(s) 53, 578
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 4 cut(s) 6, 191, 354, 540
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 4 cut(s) 3, 188, 351, 537
BstMWI GCNNNNNNNGC 2 cut(s) 179, 431
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 2 cut(s) 129, 216
BstV2I GAAGAC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 188
BstYI RGATCY 1 cut(s) 188
BtsCI GGATG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 361
Cac8I GCNNGC 2 cut(s) 65, 436
Csp6I GTAC 5 cut(s) 28, 118, 276, 346, 497
CviAII CATG 3 cut(s) 335, 349, 403
CviJI RGCY 9 cut(s) 49, 78, 109, 146, 205, 367, 488, 577, 582
CviKI_1 RGCY 9 cut(s) 49, 78, 109, 146, 205, 367, 488, 577, 582
CviQI GTAC 5 cut(s) 28, 118, 276, 346, 497
DdeI CTNAG 2 cut(s) 53, 578
DpnI GATC 4 cut(s) 5, 190, 353, 539
DpnII GATC 4 cut(s) 3, 188, 351, 537
DrdI GACNNNNNNGTC 1 cut(s) 516
DseDI GACNNNNNNGTC 1 cut(s) 516
Eam1104I CTCTTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 229
Ecl136II GAGCTC 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 111
Eco53kI GAGCTC 1 cut(s) 109
Eco88I CYCGRG 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 111
FaeI CATG 3 cut(s) 338, 352, 406
FaiI YATR 6 cut(s) 143, 180, 336, 350, 404, 440
FatI CATG 3 cut(s) 334, 348, 402
FbaI TGATCA 2 cut(s) 351, 537
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 111
FspBI CTAG 2 cut(s) 164, 200
GsaI CCCAGC 1 cut(s) 177
HapII CCGG 1 cut(s) 217
Hin1II CATG 3 cut(s) 338, 352, 406
HincII GTYRAC 2 cut(s) 136, 376
HindII GTYRAC 2 cut(s) 136, 376
HinfI GANTC 3 cut(s) 9, 311, 391
HpaI GTTAAC 1 cut(s) 376
HpaII CCGG 1 cut(s) 217
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 3 cut(s) 136, 271, 376
Hpy188I TCNGA 2 cut(s) 8, 106
Hpy188III TCNNGA 4 cut(s) 13, 192, 200, 455
Hpy8I GTNNAC 3 cut(s) 136, 271, 376
HpyAV CCTTC 2 cut(s) 439, 500
HpyCH4III ACNGT 4 cut(s) 27, 246, 275, 280
HpyCH4IV ACGT 2 cut(s) 36, 517
HpyCH4V TGCA 2 cut(s) 182, 213
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 431
HpyF3I CTNAG 2 cut(s) 53, 578
HpySE526I ACGT 2 cut(s) 36, 517
Hsp92II CATG 3 cut(s) 338, 352, 406
Ksp22I TGATCA 2 cut(s) 351, 537
KspAI GTTAAC 1 cut(s) 376
Kzo9I GATC 4 cut(s) 3, 188, 351, 537
LmnI GCTCC 3 cut(s) 106, 364, 422
LweI GCATC 1 cut(s) 160
MaeI CTAG 2 cut(s) 164, 200
MaeII ACGT 2 cut(s) 36, 517
MaeIII GTNAC 2 cut(s) 246, 481
MalI GATC 4 cut(s) 5, 190, 353, 539
MboI GATC 4 cut(s) 3, 188, 351, 537
MboII GAAGA 3 cut(s) 171, 246, 350
MflI RGATCY 1 cut(s) 188
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 1 cut(s) 255
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 2 cut(s) 57, 166
MnlI CCTC 6 cut(s) 60, 64, 160, 531, 547, 562
MseI TTAA 2 cut(s) 375, 561
MslI CAYNNNNRTG 1 cut(s) 339
MspCI CTTAAG 1 cut(s) 560
MspI CCGG 1 cut(s) 217
MspR9I CCNGG 2 cut(s) 131, 218
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 179, 431
NciI CCSGG 1 cut(s) 218
NdeII GATC 4 cut(s) 3, 188, 351, 537
NlaIII CATG 3 cut(s) 338, 352, 406
PaeR7I CTCGAG 1 cut(s) 192
PfeI GAWTC 2 cut(s) 311, 391
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
Psp124BI GAGCTC 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 129
PspFI CCCAGC 1 cut(s) 173
PspGI CCWGG 1 cut(s) 129
PsuI RGATCY 1 cut(s) 188
RsaI GTAC 5 cut(s) 29, 119, 277, 347, 498
RsaNI GTAC 5 cut(s) 28, 118, 276, 346, 497
RseI CAYNNNNRTG 1 cut(s) 339
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 375, 561
Sau3AI GATC 4 cut(s) 3, 188, 351, 537
ScaI AGTACT 2 cut(s) 29, 277
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 2 cut(s) 131, 218
SduI GDGCHC 1 cut(s) 111
SfaNI GCATC 1 cut(s) 160
Sfr274I CTCGAG 1 cut(s) 192
SlaI CTCGAG 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 2 cut(s) 192, 560
SmoI CTYRAG 2 cut(s) 192, 560
Sse9I AATT 1 cut(s) 255
SsiI CCGC 2 cut(s) 84, 420
SspMI CTAG 2 cut(s) 164, 200
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 129, 216
TaaI ACNGT 4 cut(s) 27, 246, 275, 280
TaiI ACGT 2 cut(s) 39, 520
TaqI TCGA 3 cut(s) 193, 389, 523
TasI AATT 1 cut(s) 255
TatI WGTACW 4 cut(s) 27, 117, 275, 345
TfiI GAWTC 2 cut(s) 311, 391
Tru1I TTAA 2 cut(s) 375, 561
Tru9I TTAA 2 cut(s) 375, 561
TscAI CASTG 1 cut(s) 361
TspDTI ATGAA 3 cut(s) 35, 351, 373
TspRI CASTG 1 cut(s) 361
Vha464I CTTAAG 1 cut(s) 560
XapI RAATTY 1 cut(s) 255
XbaI TCTAGA 1 cut(s) 199
XhoI CTCGAG 1 cut(s) 192
XspI CTAG 2 cut(s) 164, 200
ZrmI AGTACT 2 cut(s) 29, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.