Rorug01G0464700

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015824
Physical Location & Seq
Reverse (-)
55717071 .. 55719509
2439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0464700.1

Sequence Viewer

Length: 1638 bp
ATGAAGCCTCTACTGAGTATGAGAGATTTCAAGGGCAAAGAACTCAGACCTGGTTCATCCTTGGATATTTTTGGTCAGGTTGCTTGTGTTGCACAGGAGAAACTGAAGCAAAGGAGGAAGGAGAAAAATATTAAAATCGAAACCCAAATGGGTAGTAGTAGTACCCCCCAGATGAAAGAACCCAATTGTGTAGCTGAAGCATTTTCATTTGGATCCAAAGAGACGTATGCTAATATGAACAAAAGAAAGAGTCGAGAGGACGATGTTGATGATCATGACAAGAGTTTTCAATTGAAACAACAGAAGATAATTTTGTTGCACAAGGAAATTGGTAGTACCTCCAAGACTAAAGAACCAAATACATCAGTAGGAAGAGAATTGGAGCAGGATCCATTATACTCAGTTGGCACAATAAGGAGTGAAAGGTCTTTCCCTAGGGAAAAGTATATAACGAGCTCTGATTTGGGGTTTCAGGAAAAGAATGGGTTGCCAAAGAAGAAGAGTATTAATGGGGTTGAGTATGATACAGATTGGGGTCTAAAGAACAAGCCGAAGAATATGAAGATTAAGAAGGAAAAGGGGTTGGGATTGAGGCCGAAGGAGCATGTCAGAGCACCAAAATATAATACTGATCCTAATGACTTGCCTGAAGAGTTGAAAAGGAAGATCGAAACTTTGGAAGGGATTGAAAGTTTTGAAAAAGCCAAGATGACTATGGTGATAGAAAAGCATTTGTTCAGTACTGATATGGCAAAAAGCGCTAATCGGTTGTCAATGCCTCTAAAACAAATCAAACCGGAGAGTTTTCTGGACGAGGATGAGATAAAGTTTCTTGCAATTCAAGAAGATTGGCCGGTTTCCGTTATAAGTCCCCTACTTGAAGATGAAGCTCTGACCTTCAGGCAGTGGAACATGAAAAAGGATAACGGCAGCGTTAGCTCAAGTTATGTGTTGAAAACACGTTGGAACGAAGTTCGCAGGAAAAATGGTCTCAAACGAAATGATGTAATCCAAGTTTGGTCATTCCGAGATGTGGGAAACAACCTTCACTTTGCTCTTGTTTTGGTAGAGAAGTCAAAAGATGGTGGCTCAAGTAGTGATGGTGATAGGTGTAGCCTACCTTCTTCACGATCAACAACGCCGCCTAGCAAGAGTGATGTTGATGGTGAAAGTAATAGTTGTGATATTGGCCAAGGAACAGAAGCAAAGGAACAAGAGATGATAGAAGGAGCTCAGATTAATGATGGGAGCAGTAGTGGGAATGGGAGAACTTCAACACCATATGGCAATGAGTCTCATGATCACGAAATTTCGACACCGTTGAAACTCTTTAGTGAGGGAGGTCAGACTGCACCGTTATGCAGCGATACGGTTCAAGATGGTAGATGCCTACTCGGAGATGGGATCGTTGGGGATTGGCTGGGATCGGAATTCGATCGGATCTGGTCTGATTGCAAGCGAGATCGATCTGATCCAAGTAGATTAGTGACGTCAATCCCCGACCAGATCTCATTTCTGGGAAAATGGGGTTGTCATCTCCGGTCCGACGAGTGGGCTGGTATTACTGGTGCTGCGAAGCTGGTGAGGGGCTCGCAGCGGCTTGGTGTTGGTGGTGGTGCAACGGTAGGGAGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

545

Amino Acids

60.93

Weight (kDa)

8.53

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g31720-like PF03754 236 - 325 2.3e-12 B3 domain-containing protein At2g31720-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015824)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58030
fragaria_vesca FvH4_1g01170 FvH4_1g01170
malus_domestica MD02G1009800.v1.1
prunus_persica Prupe.7G260200_v2.0.a1 Prupe.7G260200_v2.0.a1
pyrus_communis pycom02g00850 pycom15g13890
rosa_chinensis RchiOBHm_Chr2g0085961
rosa_laevigata RLG00000015730
rosa_multiflora Rmu_ssc0000355.1_g000026
rosa_roxburghii Rroxscaffold_2G00154890
rosa_rugosa Rorug01G0464700
rosa_samantha Rh2AG013900
rosa_wichuraiana Rw2G001230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 866
AatII GACGTC 1 cut(s) 1493
AciI CCGC 2 cut(s) 1142, 1597
AclWI GGATC 9 cut(s) 207, 220, 383, 396, 626, 1412, 1432, 1448, 1466
AcoI YGGCCR 2 cut(s) 851, 1189
AcsI RAATTY 2 cut(s) 1308, 1430
AcuI CTGAAG 4 cut(s) 125, 216, 669, 883
AcyI GRCGYC 1 cut(s) 1490
AfaI GTAC 3 cut(s) 163, 337, 742
AfeI AGCGCT 1 cut(s) 760
AfiI CCNNNNNNNGG 2 cut(s) 1033, 1551
AflIII ACRYGT 1 cut(s) 959
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 6 cut(s) 194, 456, 890, 939, 1232, 1579
AluI AGCT 6 cut(s) 194, 456, 890, 939, 1232, 1579
Alw21I GWGCWC 3 cut(s) 458, 616, 1234
Alw26I GTCTC 3 cut(s) 215, 995, 1299
AlwI GGATC 9 cut(s) 207, 220, 383, 396, 626, 1412, 1432, 1448, 1466
Aor51HI AGCGCT 1 cut(s) 760
AoxI GGCC 3 cut(s) 593, 851, 1189
ApeKI GCWGC 4 cut(s) 930, 1362, 1571, 1594
ApoI RAATTY 2 cut(s) 1308, 1430
AseI ATTAAT 2 cut(s) 507, 1239
AspA2I CCTAGG 1 cut(s) 434
AspLEI GCGC 1 cut(s) 761
AspS9I GGNCC 1 cut(s) 1542
AsuHPI GGTGA 4 cut(s) 730, 1115, 1178, 1594
AvaII GGWCC 1 cut(s) 1542
AvrII CCTAGG 1 cut(s) 434
BalI TGGCCA 1 cut(s) 1191
BamHI GGATCC 2 cut(s) 212, 388
BanII GRGCYC 3 cut(s) 458, 1234, 1592
BarI GAAGNNNNNNTAC 2 cut(s) 1105, 1137
Bbv12I GWGCWC 3 cut(s) 458, 616, 1234
BbvI GCAGC 4 cut(s) 942, 1374, 1558, 1606
BccI CCATC 6 cut(s) 1076, 1094, 1157, 1238, 1373, 1394
BceAI ACGGC 1 cut(s) 943
BciT130I CCWGG 1 cut(s) 51
BclI TGATCA 2 cut(s) 271, 1300
BcoDI GTCTC 3 cut(s) 215, 995, 1299
BfaI CTAG 2 cut(s) 435, 1146
BfoI RGCGCY 1 cut(s) 762
BglII AGATCT 1 cut(s) 1506
BisI GCNGC 6 cut(s) 931, 1142, 1363, 1572, 1595, 1598
BlnI CCTAGG 1 cut(s) 434
BlsI GCNGC 6 cut(s) 932, 1143, 1364, 1573, 1596, 1599
BmcAI AGTACT 1 cut(s) 742
Bme1390I CCNGG 1 cut(s) 51
Bme18I GGWCC 1 cut(s) 1542
BmgT120I GGNCC 1 cut(s) 1542
BmiI GGNNCC 2 cut(s) 214, 390
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 1376
BpuEI CTTGAG 2 cut(s) 925, 1075
Bsa29I ATCGAT 1 cut(s) 1465
BsaHI GRCGYC 1 cut(s) 1490
BsaI GGTCTC 1 cut(s) 995
BsaJI CCNNGG 3 cut(s) 60, 434, 1192
BsaWI WCCGGW 2 cut(s) 796, 1539
BsaXI ACNNNNNCTCC 2 cut(s) 1240, 1270
Bsc4I CCNNNNNNNGG 2 cut(s) 1033, 1551
Bse118I RCCGGY 1 cut(s) 853
Bse1I ACTGG 1 cut(s) 1570
Bse3DI GCAATG 1 cut(s) 1294
BseBI CCWGG 1 cut(s) 51
BseCI ATCGAT 1 cut(s) 1465
BseDI CCNNGG 3 cut(s) 60, 434, 1192
BseGI GGATG 2 cut(s) 56, 823
BseLI CCNNNNNNNGG 2 cut(s) 1033, 1551
BseMI GCAATG 1 cut(s) 1294
BseMII CTCAG 4 cut(s) 5, 58, 414, 1247
BseNI ACTGG 1 cut(s) 1570
BseXI GCAGC 4 cut(s) 942, 1374, 1558, 1606
BseYI CCCAGC 1 cut(s) 1420
BsgI GTGCAG 1 cut(s) 1335
Bsh1285I CGRYCG 1 cut(s) 1438
BshFI GGCC 3 cut(s) 595, 853, 1191
BshVI ATCGAT 1 cut(s) 1465
BsiEI CGRYCG 1 cut(s) 1438
BsiHKAI GWGCWC 3 cut(s) 458, 616, 1234
BsiSI CCGG 3 cut(s) 797, 854, 1540
BslFI GGGAC 1 cut(s) 855
BslI CCNNNNNNNGG 2 cut(s) 1033, 1551
BsmAI GTCTC 3 cut(s) 215, 995, 1299
BsmBI CGTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 855
BsnI GGCC 3 cut(s) 595, 853, 1191
Bso31I GGTCTC 1 cut(s) 995
Bsp1286I GDGCHC 4 cut(s) 458, 616, 1234, 1592
BspACI CCGC 2 cut(s) 1142, 1597
BspANI GGCC 3 cut(s) 595, 853, 1191
BspCNI CTCAG 4 cut(s) 6, 57, 413, 1246
BspDI ATCGAT 1 cut(s) 1465
BspHI TCATGA 2 cut(s) 274, 1297
BspLI GGNNCC 2 cut(s) 214, 390
BspPI GGATC 9 cut(s) 207, 220, 383, 396, 626, 1412, 1432, 1448, 1466
BspTNI GGTCTC 1 cut(s) 995
BsrDI GCAATG 1 cut(s) 1294
BsrFI RCCGGY 1 cut(s) 853
BsrI ACTGG 1 cut(s) 1570
BssAI RCCGGY 1 cut(s) 853
BssECI CCNNGG 3 cut(s) 60, 434, 1192
BssNI GRCGYC 1 cut(s) 1490
BssT1I CCWWGG 3 cut(s) 60, 434, 1192
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 4 cut(s) 1320, 1356, 1372, 1624
Bst6I CTCTTC 3 cut(s) 367, 494, 645
BstACI GRCGYC 1 cut(s) 1490
BstC8I GCNNGC 2 cut(s) 1457, 1592
BstDEI CTNAG 4 cut(s) 14, 44, 400, 1233
BstF5I GGATG 2 cut(s) 56, 823
BstH2I RGCGCY 1 cut(s) 762
BstHHI GCGC 1 cut(s) 761
BstMAI GTCTC 3 cut(s) 215, 995, 1299
BstMCI CGRYCG 1 cut(s) 1438
BstMWI GCNNNNNNNGC 4 cut(s) 89, 601, 758, 936
BstNI CCWGG 1 cut(s) 51
BstNSI RCATGY 1 cut(s) 608
BstSCI CCNGG 1 cut(s) 49
BstV1I GCAGC 4 cut(s) 942, 1374, 1558, 1606
BstX2I RGATCY 4 cut(s) 212, 388, 1440, 1506
BstYI RGATCY 4 cut(s) 212, 388, 1440, 1506
Bsu15I ATCGAT 1 cut(s) 1465
BsuRI GGCC 3 cut(s) 595, 853, 1191
BsuTUI ATCGAT 1 cut(s) 1465
BtsCI GGATG 2 cut(s) 56, 823
BtsI GCAGTG 1 cut(s) 911
BtsIMutI CAGTG 1 cut(s) 911
Cac8I GCNNGC 2 cut(s) 1457, 1592
CciI TCATGA 2 cut(s) 274, 1297
CfoI GCGC 1 cut(s) 761
Cfr10I RCCGGY 1 cut(s) 853
Cfr13I GGNCC 1 cut(s) 1542
ClaI ATCGAT 1 cut(s) 1465
CpoI CGGWCCG 1 cut(s) 1542
CsiI ACCWGGT 1 cut(s) 49
Csp6I GTAC 3 cut(s) 162, 336, 741
CspI CGGWCCG 1 cut(s) 1542
CviAII CATG 4 cut(s) 275, 605, 913, 1298
CviQI GTAC 3 cut(s) 162, 336, 741
DdeI CTNAG 4 cut(s) 14, 44, 400, 1233
EaeI YGGCCR 2 cut(s) 851, 1189
Eam1104I CTCTTC 3 cut(s) 367, 494, 645
EarI CTCTTC 3 cut(s) 367, 494, 645
Ecl136II GAGCTC 2 cut(s) 456, 1232
Eco130I CCWWGG 3 cut(s) 60, 434, 1192
Eco24I GRGCYC 3 cut(s) 458, 1234, 1592
Eco31I GGTCTC 1 cut(s) 995
Eco47I GGWCC 1 cut(s) 1542
Eco47III AGCGCT 1 cut(s) 760
Eco53kI GAGCTC 2 cut(s) 456, 1232
Eco57I CTGAAG 4 cut(s) 125, 216, 669, 883
EcoICRI GAGCTC 2 cut(s) 456, 1232
EcoRI GAATTC 1 cut(s) 1430
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 3 cut(s) 60, 434, 1192
EcoT38I GRGCYC 3 cut(s) 458, 1234, 1592
ErhI CCWWGG 3 cut(s) 60, 434, 1192
Esp3I CGTCTC 1 cut(s) 215
FaeI CATG 4 cut(s) 278, 608, 916, 1301
FaqI GGGAC 1 cut(s) 855
FatI CATG 4 cut(s) 274, 604, 912, 1297
FauNDI CATATG 1 cut(s) 1282
FbaI TGATCA 2 cut(s) 271, 1300
Fnu4HI GCNGC 6 cut(s) 931, 1142, 1363, 1572, 1595, 1598
FokI GGATG 2 cut(s) 43, 830
FriOI GRGCYC 3 cut(s) 458, 1234, 1592
Fsp4HI GCNGC 6 cut(s) 931, 1142, 1363, 1572, 1595, 1598
FspBI CTAG 2 cut(s) 435, 1146
GlaI GCGC 1 cut(s) 760
GluI GCNGC 6 cut(s) 931, 1142, 1363, 1572, 1595, 1598
GsaI CCCAGC 1 cut(s) 1424
HaeII RGCGCY 1 cut(s) 762
HaeIII GGCC 3 cut(s) 595, 853, 1191
HapII CCGG 3 cut(s) 797, 854, 1540
HhaI GCGC 1 cut(s) 761
Hin1I GRCGYC 1 cut(s) 1490
Hin1II CATG 4 cut(s) 278, 608, 916, 1301
Hin6I GCGC 1 cut(s) 759
HinP1I GCGC 1 cut(s) 759
HinfI GANTC 2 cut(s) 250, 1292
HpaII CCGG 3 cut(s) 797, 854, 1540
HphI GGTGA 4 cut(s) 730, 1115, 1178, 1594
Hpy188III TCNNGA 9 cut(s) 254, 275, 473, 809, 842, 1128, 1298, 1304, 1376
Hpy99I CGWCG 1 cut(s) 1550
HpyAV CCTTC 8 cut(s) 112, 565, 592, 674, 907, 1055, 1131, 1220
HpyCH4III ACNGT 4 cut(s) 1320, 1356, 1372, 1624
HpyCH4IV ACGT 3 cut(s) 224, 961, 1490
HpyCH4V TGCA 7 cut(s) 92, 319, 836, 1352, 1362, 1455, 1619
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 601, 758, 936
HpyF3I CTNAG 4 cut(s) 14, 44, 400, 1233
HpySE526I ACGT 3 cut(s) 224, 961, 1490
Hsp92I GRCGYC 1 cut(s) 1490
Hsp92II CATG 4 cut(s) 278, 608, 916, 1301
HspAI GCGC 1 cut(s) 759
Ksp22I TGATCA 2 cut(s) 271, 1300
LmnI GCTCC 4 cut(s) 382, 601, 1229, 1248
Lsp1109I GCAGC 4 cut(s) 942, 1374, 1558, 1606
LweI GCATC 1 cut(s) 1376
MabI ACCWGGT 1 cut(s) 49
MaeI CTAG 2 cut(s) 435, 1146
MaeII ACGT 3 cut(s) 224, 961, 1490
MaeIII GTNAC 1 cut(s) 1486
MfeI CAATTG 2 cut(s) 184, 290
MflI RGATCY 4 cut(s) 212, 388, 1440, 1506
MhlI GDGCHC 4 cut(s) 458, 616, 1234, 1592
MlsI TGGCCA 1 cut(s) 1191
MluCI AATT 8 cut(s) 184, 290, 309, 327, 377, 837, 1308, 1430
MluNI TGGCCA 1 cut(s) 1191
MlyI GAGTC 2 cut(s) 259, 1301
MmeI TCCRAC 2 cut(s) 944, 1569
Mox20I TGGCCA 1 cut(s) 1191
MscI TGGCCA 1 cut(s) 1191
MseI TTAA 4 cut(s) 132, 507, 567, 1239
MslI CAYNNNNRTG 1 cut(s) 1357
Msp20I TGGCCA 1 cut(s) 1191
MspA1I CMGCKG 1 cut(s) 1597
MspI CCGG 3 cut(s) 797, 854, 1540
MspR9I CCNGG 1 cut(s) 51
MunI CAATTG 2 cut(s) 184, 290
MvaI CCWGG 1 cut(s) 51
MwoI GCNNNNNNNGC 4 cut(s) 89, 601, 758, 936
NdeI CATATG 1 cut(s) 1282
NlaIII CATG 4 cut(s) 278, 608, 916, 1301
NlaIV GGNNCC 2 cut(s) 214, 390
NmuCI GTSAC 1 cut(s) 1486
NspI RCATGY 1 cut(s) 608
PagI TCATGA 2 cut(s) 274, 1297
PkrI GCNGC 6 cut(s) 932, 1143, 1364, 1573, 1596, 1599
Ple19I CGATCG 1 cut(s) 1438
PleI GAGTC 2 cut(s) 258, 1300
PpsI GAGTC 2 cut(s) 258, 1300
PshBI ATTAAT 2 cut(s) 507, 1239
PsiI TTATAA 1 cut(s) 866
Psp124BI GAGCTC 2 cut(s) 458, 1234
Psp6I CCWGG 1 cut(s) 49
PspFI CCCAGC 1 cut(s) 1420
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 2 cut(s) 214, 390
PspPI GGNCC 1 cut(s) 1542
PsuI RGATCY 4 cut(s) 212, 388, 1440, 1506
PvuI CGATCG 1 cut(s) 1438
RsaI GTAC 3 cut(s) 163, 337, 742
RsaNI GTAC 3 cut(s) 162, 336, 741
RseI CAYNNNNRTG 1 cut(s) 1357
Rsr2I CGGWCCG 1 cut(s) 1542
RsrII CGGWCCG 1 cut(s) 1542
SacI GAGCTC 2 cut(s) 458, 1234
SaqAI TTAA 4 cut(s) 132, 507, 567, 1239
SatI GCNGC 6 cut(s) 931, 1142, 1363, 1572, 1595, 1598
Sau96I GGNCC 1 cut(s) 1542
ScaI AGTACT 1 cut(s) 742
SchI GAGTC 2 cut(s) 259, 1301
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 4 cut(s) 458, 616, 1234, 1592
SexAI ACCWGGT 1 cut(s) 49
SfaNI GCATC 1 cut(s) 1376
SinI GGWCC 1 cut(s) 1542
SmiMI CAYNNNNRTG 1 cut(s) 1357
SmlI CTYRAG 2 cut(s) 940, 1090
SmoI CTYRAG 2 cut(s) 940, 1090
Sse9I AATT 8 cut(s) 184, 290, 309, 327, 377, 837, 1308, 1430
SsiI CCGC 2 cut(s) 1142, 1597
SspI AATATT 1 cut(s) 130
SspMI CTAG 2 cut(s) 435, 1146
SstI GAGCTC 2 cut(s) 458, 1234
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 3 cut(s) 60, 434, 1192
TaaI ACNGT 4 cut(s) 1320, 1356, 1372, 1624
TaiI ACGT 3 cut(s) 227, 964, 1493
TaqI TCGA 6 cut(s) 138, 253, 669, 1313, 1434, 1465
TasI AATT 8 cut(s) 184, 290, 309, 327, 377, 837, 1308, 1430
TatI WGTACW 1 cut(s) 740
TauI GCSGC 2 cut(s) 1144, 1600
Tru1I TTAA 4 cut(s) 132, 507, 567, 1239
Tru9I TTAA 4 cut(s) 132, 507, 567, 1239
TscAI CASTG 1 cut(s) 911
TseFI GTSAC 1 cut(s) 1486
TseI GCWGC 4 cut(s) 930, 1362, 1571, 1594
Tsp45I GTSAC 1 cut(s) 1486
TspDTI ATGAA 8 cut(s) 17, 45, 188, 195, 251, 575, 900, 929
TspGWI ACGGA 1 cut(s) 850
TspRI CASTG 1 cut(s) 911
VpaK11BI GGWCC 1 cut(s) 1542
VspI ATTAAT 2 cut(s) 507, 1239
XapI RAATTY 2 cut(s) 1308, 1430
XceI RCATGY 1 cut(s) 608
XcmI CCANNNNNNNNNTGG 1 cut(s) 712
XmaJI CCTAGG 1 cut(s) 434
XspI CTAG 2 cut(s) 435, 1146
ZraI GACGTC 1 cut(s) 1491
ZrmI AGTACT 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.