Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015824

Physical Location & Seq

Genomic Coordinates Reverse (-)

9471441 .. 9473624

Gene Structure 2184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g13890.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGATTGGAGTAGGGAAGATCAAGCAATACTCCAATGTCCTCGACAAGCCCCTCAGCAAGGGCAAACAGGAGGTTAGTTTGAGTGCGTTTGCGTTCTTGTTTTCGGAGCTCGTTCAGTACAATCAGACGCAGGTTGACAACATTGCGGAGTTAGAACGAAGGCTGGAGGATGCAGGATATGCTGTTGGGGCTCGAGTTCTGGAGCTTCTTTGCCATAGGGATAAGGGAAACAGGAGGGAGACACGGTTGCTGGGTATCCTGTCTTTTGTGCATAGCACGGTGTGGAAGGTGTTATTTGGAAAGGTAGCTGACTCCCTTGAGAAAGGCACTGAACATGAAGATGAGTACATGATTAGTGAGAAGGAGCTCCTTGTGAACAGATTTATTTCGATTCCAAAAGACATGGGAACCTTTAATTGTGGAGCATTTGTCGCTGGAATTGTAAGGGGAGTTTTGGATGGTGCTGGTTTCCCAGCTGTGGTAACAGCGCATTTTGTACCAGTGGAGGGACAGCAACGGCCTCGAACAACCATTTTAATTAAGTTTGCTGAAGAGGTACTAAGAAGAGAAGCAAGGTTAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAPP

Protein Analysis

195

Amino Acids

21.67

Weight (kDa)

7.78

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58030
fragaria_vesca	FvH4_1g01170 FvH4_1g01170
malus_domestica	MD02G1009800.v1.1
prunus_persica	Prupe.7G260200_v2.0.a1 Prupe.7G260200_v2.0.a1
pyrus_communis	pycom02g00850 pycom15g13890
rosa_chinensis	RchiOBHm_Chr2g0085961
rosa_laevigata	RLG00000015730
rosa_multiflora	Rmu_ssc0000355.1_g000026
rosa_roxburghii	Rroxscaffold_2G00154890
rosa_rugosa	Rorug01G0464700
rosa_samantha	Rh2AG013900
rosa_wichuraiana	Rw2G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	121
AciI	CCGC	1 cut(s)	146
AcuI	CTGAAG	1 cut(s)	570
AdeI	CACNNNGTG	1 cut(s)	282
AfaI	GTAC	4 cut(s)	119, 347, 498, 558
AfiI	CCNNNNNNNGG	3 cut(s)	58, 478, 506
AluBI	AGCT	5 cut(s)	109, 205, 308, 367, 476
AluI	AGCT	5 cut(s)	109, 205, 308, 367, 476
Alw21I	GWGCWC	2 cut(s)	111, 369
Alw26I	GTCTC	1 cut(s)	233
Ama87I	CYCGRG	1 cut(s)	192
AoxI	GGCC	1 cut(s)	518
AspLEI	GCGC	1 cut(s)	490
AvaI	CYCGRG	1 cut(s)	192
BanII	GRGCYC	3 cut(s)	111, 193, 369
Bbv12I	GWGCWC	2 cut(s)	111, 369
BbvCI	CCTCAGC	1 cut(s)	53
BccI	CCATC	1 cut(s)	452
BceAI	ACGGC	1 cut(s)	533
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BciVI	GTATCC	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	233
BfuAI	ACCTGC	1 cut(s)	121
BfuI	GTATCC	1 cut(s)	266
BmeT110I	CYCGRG	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	409
BmsI	GCATC	1 cut(s)	160
BpmI	CTGGAG	2 cut(s)	185, 221
Bpu10I	CCTNAGC	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	338
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 260, 414, 444
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 478, 506
Bse1I	ACTGG	1 cut(s)	500
Bse3DI	GCAATG	1 cut(s)	141
BseGI	GGATG	2 cut(s)	175, 463
BseLI	CCNNNNNNNGG	3 cut(s)	58, 478, 506
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	500
BseYI	CCCAGC	2 cut(s)	250, 472
BshFI	GGCC	1 cut(s)	520
BsiHKAI	GWGCWC	2 cut(s)	111, 369
BsiHKCI	CYCGRG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	522
BslI	CCNNNNNNNGG	3 cut(s)	58, 478, 506
BsmAI	GTCTC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	522
BsnI	GGCC	1 cut(s)	520
BsoBI	CYCGRG	1 cut(s)	192
Bsp1286I	GDGCHC	3 cut(s)	111, 193, 369
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	1 cut(s)	146
BspANI	GGCC	1 cut(s)	520
BspCNI	CTCAG	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	409
BspMI	ACCTGC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	500
BssMI	GATC	1 cut(s)	18
Bst4CI	ACNGT	2 cut(s)	246, 280
Bst6I	CTCTTC	2 cut(s)	546, 559
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstDEI	CTNAG	2 cut(s)	53, 560
BstENI	CCTNNNNNAGG	1 cut(s)	56
BstF5I	GGATG	2 cut(s)	175, 463
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 188, 431
BsuI	GTATCC	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	520
BtsCI	GGATG	2 cut(s)	175, 463
BtsIMutI	CAGTG	2 cut(s)	327, 507
BveI	ACCTGC	1 cut(s)	121
CfoI	GCGC	1 cut(s)	490
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	4 cut(s)	118, 346, 497, 557
CviAII	CATG	3 cut(s)	335, 349, 403
CviJI	RGCY	9 cut(s)	49, 109, 163, 191, 205, 308, 367, 476, 520
CviKI_1	RGCY	9 cut(s)	49, 109, 163, 191, 205, 308, 367, 476, 520
CviQI	GTAC	4 cut(s)	118, 346, 497, 557
DdeI	CTNAG	2 cut(s)	53, 560
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
DraIII	CACNNNGTG	1 cut(s)	282
Eam1104I	CTCTTC	2 cut(s)	546, 559
EarI	CTCTTC	2 cut(s)	546, 559
Ecl136II	GAGCTC	2 cut(s)	109, 367
Eco24I	GRGCYC	3 cut(s)	111, 193, 369
Eco53kI	GAGCTC	2 cut(s)	109, 367
Eco57I	CTGAAG	1 cut(s)	570
Eco88I	CYCGRG	1 cut(s)	192
EcoICRI	GAGCTC	2 cut(s)	109, 367
EcoNI	CCTNNNNNAGG	1 cut(s)	56
EcoT38I	GRGCYC	3 cut(s)	111, 193, 369
FaeI	CATG	3 cut(s)	338, 352, 406
FaiI	YATR	6 cut(s)	180, 216, 273, 336, 350, 404
FaqI	GGGAC	1 cut(s)	522
FatI	CATG	3 cut(s)	334, 348, 402
FokI	GGATG	2 cut(s)	182, 470
FriOI	GRGCYC	3 cut(s)	111, 193, 369
GlaI	GCGC	1 cut(s)	489
GsaI	CCCAGC	2 cut(s)	254, 476
GsuI	CTGGAG	2 cut(s)	185, 221
HaeIII	GGCC	1 cut(s)	520
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	490
Hin1II	CATG	3 cut(s)	338, 352, 406
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	2 cut(s)	311, 391
Hpy166II	GTNNAC	2 cut(s)	136, 376
Hpy188I	TCNGA	2 cut(s)	106, 126
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	2 cut(s)	136, 376
HpyAV	CCTTC	3 cut(s)	153, 280, 355
HpyCH4III	ACNGT	2 cut(s)	246, 280
HpyCH4V	TGCA	2 cut(s)	173, 271
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 188, 431
HpyF3I	CTNAG	2 cut(s)	53, 560
Hsp92II	CATG	3 cut(s)	338, 352, 406
HspAI	GCGC	1 cut(s)	488
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	5 cut(s)	106, 202, 364, 372, 422
LweI	GCATC	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	4 cut(s)	28, 350, 563, 576
MhlI	GDGCHC	3 cut(s)	111, 193, 369
MluCI	AATT	3 cut(s)	415, 438, 537
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	8 cut(s)	50, 62, 64, 160, 228, 499, 531, 547
MseI	TTAA	3 cut(s)	414, 536, 540
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	476
MwoI	GCNNNNNNNGC	3 cut(s)	179, 188, 431
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	3 cut(s)	338, 352, 406
NlaIV	GGNNCC	1 cut(s)	409
PacI	TTAATTAA	1 cut(s)	540
PaeR7I	CTCGAG	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	391
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
Psp124BI	GAGCTC	2 cut(s)	111, 369
PspFI	CCCAGC	2 cut(s)	250, 472
PspN4I	GGNNCC	1 cut(s)	409
PspXI	VCTCGAGB	1 cut(s)	192
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	4 cut(s)	119, 347, 498, 558
RsaNI	GTAC	4 cut(s)	118, 346, 497, 557
RseI	CAYNNNNRTG	1 cut(s)	339
SacI	GAGCTC	2 cut(s)	111, 369
SaqAI	TTAA	3 cut(s)	414, 536, 540
Sau3AI	GATC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	305
SduI	GDGCHC	3 cut(s)	111, 193, 369
SfaNI	GCATC	1 cut(s)	160
Sfr274I	CTCGAG	1 cut(s)	192
SlaI	CTCGAG	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	2 cut(s)	192, 317
SmoI	CTYRAG	2 cut(s)	192, 317
Sse9I	AATT	3 cut(s)	415, 438, 537
SsiI	CCGC	1 cut(s)	146
SstI	GAGCTC	2 cut(s)	111, 369
TaaI	ACNGT	2 cut(s)	246, 280
TaqI	TCGA	4 cut(s)	42, 193, 389, 523
TasI	AATT	3 cut(s)	415, 438, 537
TatI	WGTACW	2 cut(s)	117, 345
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	3 cut(s)	414, 536, 540
Tru9I	TTAA	3 cut(s)	414, 536, 540
TscAI	CASTG	2 cut(s)	334, 507
TspDTI	ATGAA	1 cut(s)	351
TspRI	CASTG	2 cut(s)	334, 507
XagI	CCTNNNNNAGG	1 cut(s)	56
XhoI	CTCGAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.