MD02G1009800.v1.1

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0015824
Physical Location & Seq
Reverse (-)
644692 .. 647723
3032 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1009800.v1.1.491

Sequence Viewer

Length: 585 bp
ATGATTGGAGCAGGGAAGATCAAGCAGTACTCCAATGTCCTCGACAAGCCCCTCAGCAAGGGCAAACAAGAGGTCAGTTTGAGTGCGTTTGCGTTCTTGTTTTCGGAGCTTGTGCAGTACAACCAGACGCAGGTTGACAACATAGCTGAGTTAGAACGAAGGCTGGAGGATGCAGGATATGCTGTAGGGGCTCGAGTTCTGGAGCTTCTTTGCCATCGGGAAAAGGGAAACAGAAGGGAGACGCGGTTGTTGGGAATCCTGTCTTTTGTGCATAGCACTGTTTGGAAGGTGTTATTTGGAAAGGTAGCTGATTCCCTTGAGAAAGGCACTGAACATGAAGATGAGTACATGATTAGTGAGAAGGAGCTCCTTGTGAACCGTTTTATTTCGATTCCAAAAGACATGGGAACCTTTAATTGTGGAGCATTTGTTGCCGGAATTGTAAGGGGTGTTTTGGACGGCGCTGGTTTTCCAGCTGTGGTAACAGCTCATTTTGTACCAGTGGAGGGACAGCAACGACCTCGAACAACCATCTTGATAAAATTTGCCGAAGAGGTACTACGAAGAGAAGCAAGGTTAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

195

Amino Acids

21.65

Weight (kDa)

7.78

Isoelectric Point (pI)

29.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPP PF04051 30 - 182 4e-47 Transport protein particle (TRAPP) component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015824)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58030
fragaria_vesca FvH4_1g01170 FvH4_1g01170
malus_domestica MD02G1009800.v1.1
prunus_persica Prupe.7G260200_v2.0.a1 Prupe.7G260200_v2.0.a1
pyrus_communis pycom02g00850 pycom15g13890
rosa_chinensis RchiOBHm_Chr2g0085961
rosa_laevigata RLG00000015730
rosa_multiflora Rmu_ssc0000355.1_g000026
rosa_roxburghii Rroxscaffold_2G00154890
rosa_rugosa Rorug01G0464700
rosa_samantha Rh2AG013900
rosa_wichuraiana Rw2G001230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 121
AccII CGCG 1 cut(s) 244
AciI CCGC 1 cut(s) 244
AcsI RAATTY 1 cut(s) 542
AfaI GTAC 5 cut(s) 29, 119, 347, 498, 558
AfiI CCNNNNNNNGG 3 cut(s) 58, 130, 506
AluBI AGCT 7 cut(s) 109, 146, 205, 308, 367, 476, 488
AluI AGCT 7 cut(s) 109, 146, 205, 308, 367, 476, 488
Alw21I GWGCWC 1 cut(s) 369
Alw26I GTCTC 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 192
ApoI RAATTY 1 cut(s) 542
ArsI GACNNNNNNTTYG 2 cut(s) 57, 89
AspLEI GCGC 1 cut(s) 464
AvaI CYCGRG 1 cut(s) 192
BanII GRGCYC 2 cut(s) 193, 369
BarI GAAGNNNNNNTAC 2 cut(s) 543, 575
Bbv12I GWGCWC 1 cut(s) 369
BbvCI CCTCAGC 1 cut(s) 53
BccI CCATC 2 cut(s) 222, 539
BceAI ACGGC 1 cut(s) 475
BcgI CGANNNNNNTGC 2 cut(s) 503, 537
BcoDI GTCTC 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 465
BfuAI ACCTGC 1 cut(s) 121
BmcAI AGTACT 1 cut(s) 29
BmeT110I CYCGRG 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 409
BmsI GCATC 1 cut(s) 160
BpmI CTGGAG 2 cut(s) 185, 221
Bpu10I CCTNAGC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 338
BsaXI ACNNNNNCTCC 4 cut(s) 230, 260, 414, 444
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 130, 506
Bse1I ACTGG 1 cut(s) 500
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 3 cut(s) 58, 130, 506
BseMII CTCAG 2 cut(s) 67, 138
BseNI ACTGG 1 cut(s) 500
BsgI GTGCAG 1 cut(s) 134
Bsh1236I CGCG 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 369
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 1 cut(s) 435
BslFI GGGAC 1 cut(s) 522
BslI CCNNNNNNNGG 3 cut(s) 58, 130, 506
BsmAI GTCTC 1 cut(s) 233
BsmBI CGTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 522
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 2 cut(s) 193, 369
Bsp143I GATC 1 cut(s) 18
BspACI CCGC 1 cut(s) 244
BspCNI CTCAG 2 cut(s) 66, 139
BspFNI CGCG 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 409
BspMI ACCTGC 1 cut(s) 121
BsrI ACTGG 1 cut(s) 500
BssMI GATC 1 cut(s) 18
Bst4CI ACNGT 2 cut(s) 280, 380
Bst6I CTCTTC 2 cut(s) 546, 559
BstAPI GCANNNNNTGC 2 cut(s) 179, 431
BstDEI CTNAG 2 cut(s) 53, 147
BstENI CCTNNNNNAGG 1 cut(s) 56
BstF5I GGATG 1 cut(s) 175
BstFNI CGCG 1 cut(s) 244
BstH2I RGCGCY 1 cut(s) 465
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 3 cut(s) 179, 188, 431
BstSFI CTRYAG 1 cut(s) 183
BstUI CGCG 1 cut(s) 244
BtsCI GGATG 1 cut(s) 175
BtsIMutI CAGTG 3 cut(s) 276, 327, 507
BveI ACCTGC 1 cut(s) 121
CfoI GCGC 1 cut(s) 464
CseI GACGC 2 cut(s) 136, 250
Csp6I GTAC 5 cut(s) 28, 118, 346, 497, 557
CviAII CATG 3 cut(s) 335, 349, 403
CviQI GTAC 5 cut(s) 28, 118, 346, 497, 557
DdeI CTNAG 2 cut(s) 53, 147
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 546, 559
EarI CTCTTC 2 cut(s) 546, 559
Ecl136II GAGCTC 1 cut(s) 367
Eco24I GRGCYC 2 cut(s) 193, 369
Eco53kI GAGCTC 1 cut(s) 367
Eco88I CYCGRG 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 367
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoT38I GRGCYC 2 cut(s) 193, 369
Esp3I CGTCTC 1 cut(s) 233
FaeI CATG 3 cut(s) 338, 352, 406
FaiI YATR 6 cut(s) 143, 180, 273, 336, 350, 404
FaqI GGGAC 1 cut(s) 522
FatI CATG 3 cut(s) 334, 348, 402
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 2 cut(s) 193, 369
GlaI GCGC 1 cut(s) 463
GsuI CTGGAG 2 cut(s) 185, 221
HaeII RGCGCY 1 cut(s) 465
HapII CCGG 1 cut(s) 435
HgaI GACGC 2 cut(s) 136, 250
HhaI GCGC 1 cut(s) 464
Hin1II CATG 3 cut(s) 338, 352, 406
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 3 cut(s) 255, 311, 391
HpaII CCGG 1 cut(s) 435
Hpy166II GTNNAC 2 cut(s) 136, 376
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 3 cut(s) 200, 218, 535
Hpy8I GTNNAC 2 cut(s) 136, 376
HpyAV CCTTC 4 cut(s) 153, 228, 280, 355
HpyCH4III ACNGT 2 cut(s) 280, 380
HpyCH4V TGCA 3 cut(s) 115, 173, 271
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 188, 431
HpyF3I CTNAG 2 cut(s) 53, 147
Hsp92II CATG 3 cut(s) 338, 352, 406
HspAI GCGC 1 cut(s) 462
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 6 cut(s) 8, 106, 202, 364, 372, 422
LweI GCATC 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 481
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 4 cut(s) 28, 350, 563, 576
MhlI GDGCHC 2 cut(s) 193, 369
MluCI AATT 3 cut(s) 415, 438, 542
MnlI CCTC 7 cut(s) 50, 62, 64, 160, 499, 531, 547
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 1 cut(s) 435
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 3 cut(s) 179, 188, 431
NdeII GATC 1 cut(s) 18
NlaIII CATG 3 cut(s) 338, 352, 406
NlaIV GGNNCC 1 cut(s) 409
PaeR7I CTCGAG 1 cut(s) 192
PfeI GAWTC 3 cut(s) 255, 311, 391
Psp124BI GAGCTC 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 409
PspXI VCTCGAGB 1 cut(s) 192
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 5 cut(s) 29, 119, 347, 498, 558
RsaNI GTAC 5 cut(s) 28, 118, 346, 497, 557
RseI CAYNNNNRTG 1 cut(s) 339
SacI GAGCTC 1 cut(s) 369
SaqAI TTAA 1 cut(s) 414
Sau3AI GATC 1 cut(s) 18
ScaI AGTACT 1 cut(s) 29
SduI GDGCHC 2 cut(s) 193, 369
SfaNI GCATC 1 cut(s) 160
SfcI CTRYAG 1 cut(s) 183
Sfr274I CTCGAG 1 cut(s) 192
SlaI CTCGAG 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 2 cut(s) 192, 317
SmoI CTYRAG 2 cut(s) 192, 317
Sse9I AATT 3 cut(s) 415, 438, 542
SsiI CCGC 1 cut(s) 244
SstI GAGCTC 1 cut(s) 369
TaaI ACNGT 2 cut(s) 280, 380
TaqI TCGA 4 cut(s) 42, 193, 389, 523
TasI AATT 3 cut(s) 415, 438, 542
TatI WGTACW 3 cut(s) 27, 117, 345
TfiI GAWTC 3 cut(s) 255, 311, 391
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 3 cut(s) 283, 334, 507
TspDTI ATGAA 1 cut(s) 351
TspRI CASTG 3 cut(s) 283, 334, 507
XagI CCTNNNNNAGG 1 cut(s) 56
XapI RAATTY 1 cut(s) 542
XhoI CTCGAG 1 cut(s) 192
ZrmI AGTACT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.