RchiOBHm_Chr2g0085961

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0015824
Physical Location & Seq
Reverse (-)
1206612 .. 1209948
3337 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46149

Sequence Viewer

Length: 585 bp
ATGATCGGAGTCGGAAAGATGAAGCAGTACTCTAACGTCCTCGACAGGCCTCTCAGCAAAGGAAAACAAGAGGTGAGTTTGAGTGCTTTTGCGTTCTTGTTTTCGGAGCTGGTGCAGTACAATCAGACACAGGTTGACAACATTGCCGAGCTAGAAAGAAGGCTGGAAGATGCAGGCTATGCTGTTGGAGCTCGAGTTCTGGAGCTCCTTTGCCATAGGGATAAGGGAAACAGAAGGGAGACACGACTGTTGGGTATCCTGTCTTTTGTGCATAGCACAGTATGGAAGGTGTTATTCGGAAAGGTAGCTGATTCACTAGAGAAAGGCACTGAACATGAAGACGAGTACATGATTAGCGAGAAGGAACTCCTTGTGAACAGATTTATTTCGATTCCAAAAGACATGGGAACATTTAATTGTGGAGCATTTGTTGCTGGAATTGTAAGGGGTGTTTTGGATGGTGCTGGTTTTCCAGCTGTGGTAACAGCTCATTTTGTACCAGTGGAAGGTCAGCAACGACCTCGGACAACCATTTTGATAAAATTTGCTGAAGAGGTACTACGAAGGGAAGCAAGGTTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

194

Amino Acids

21.71

Weight (kDa)

7.79

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPP PF04051 30 - 182 4e-47 Transport protein particle (TRAPP) component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015824)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58030
fragaria_vesca FvH4_1g01170 FvH4_1g01170
malus_domestica MD02G1009800.v1.1
prunus_persica Prupe.7G260200_v2.0.a1 Prupe.7G260200_v2.0.a1
pyrus_communis pycom02g00850 pycom15g13890
rosa_chinensis RchiOBHm_Chr2g0085961
rosa_laevigata RLG00000015730
rosa_multiflora Rmu_ssc0000355.1_g000026
rosa_roxburghii Rroxscaffold_2G00154890
rosa_rugosa Rorug01G0464700
rosa_samantha Rh2AG013900
rosa_wichuraiana Rw2G001230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 542
AcuI CTGAAG 1 cut(s) 570
AfaI GTAC 5 cut(s) 29, 119, 347, 498, 558
AfiI CCNNNNNNNGG 1 cut(s) 506
AloI GAACNNNNNNTCC 2 cut(s) 180, 212
AluBI AGCT 7 cut(s) 109, 151, 191, 205, 308, 476, 488
AluI AGCT 7 cut(s) 109, 151, 191, 205, 308, 476, 488
Alw21I GWGCWC 2 cut(s) 193, 207
Alw26I GTCTC 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 192
AoxI GGCC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 542
ArsI GACNNNNNNTTYG 2 cut(s) 517, 549
AsuHPI GGTGA 1 cut(s) 85
AvaI CYCGRG 1 cut(s) 192
BanII GRGCYC 2 cut(s) 193, 207
BarI GAAGNNNNNNTAC 2 cut(s) 543, 575
BbsI GAAGAC 1 cut(s) 345
Bbv12I GWGCWC 2 cut(s) 193, 207
BccI CCATC 1 cut(s) 452
BcgI CGANNNNNNTGC 2 cut(s) 503, 537
BciVI GTATCC 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 2 cut(s) 152, 317
BfuI GTATCC 1 cut(s) 266
BmcAI AGTACT 1 cut(s) 29
BmeT110I CYCGRG 1 cut(s) 192
BmsI GCATC 1 cut(s) 160
BpiI GAAGAC 1 cut(s) 345
BpmI CTGGAG 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 521
BsaXI ACNNNNNCTCC 4 cut(s) 180, 210, 414, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 506
Bse1I ACTGG 1 cut(s) 500
Bse3DI GCAATG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 521
BseGI GGATG 1 cut(s) 463
BseLI CCNNNNNNNGG 1 cut(s) 506
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 500
BsgI GTGCAG 1 cut(s) 134
BshFI GGCC 1 cut(s) 49
BsiHKAI GWGCWC 2 cut(s) 193, 207
BsiHKCI CYCGRG 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 506
BsmAI GTCTC 1 cut(s) 233
BsnI GGCC 1 cut(s) 49
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 2 cut(s) 193, 207
Bsp143I GATC 1 cut(s) 3
BspANI GGCC 1 cut(s) 49
BspCNI CTCAG 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 141
BsrI ACTGG 1 cut(s) 500
BssECI CCNNGG 1 cut(s) 521
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 2 cut(s) 249, 280
Bst6I CTCTTC 1 cut(s) 546
BstAPI GCANNNNNTGC 2 cut(s) 179, 431
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 463
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 3 cut(s) 179, 188, 431
BstV2I GAAGAC 1 cut(s) 345
BsuI GTATCC 1 cut(s) 266
BsuRI GGCC 1 cut(s) 49
BtsCI GGATG 1 cut(s) 463
BtsIMutI CAGTG 2 cut(s) 327, 507
Cac8I GCNNGC 1 cut(s) 175
Csp6I GTAC 5 cut(s) 28, 118, 346, 497, 557
CviAII CATG 3 cut(s) 335, 349, 403
CviQI GTAC 5 cut(s) 28, 118, 346, 497, 557
DdeI CTNAG 1 cut(s) 53
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
Ecl136II GAGCTC 2 cut(s) 191, 205
Eco147I AGGCCT 1 cut(s) 49
Eco24I GRGCYC 2 cut(s) 193, 207
Eco53kI GAGCTC 2 cut(s) 191, 205
Eco57I CTGAAG 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 192
EcoICRI GAGCTC 2 cut(s) 191, 205
EcoT38I GRGCYC 2 cut(s) 193, 207
FaeI CATG 3 cut(s) 338, 352, 406
FaiI YATR 7 cut(s) 180, 216, 273, 283, 336, 350, 404
FatI CATG 3 cut(s) 334, 348, 402
FokI GGATG 1 cut(s) 470
FriOI GRGCYC 2 cut(s) 193, 207
FspBI CTAG 2 cut(s) 152, 317
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 1 cut(s) 49
Hin1II CATG 3 cut(s) 338, 352, 406
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 3 cut(s) 9, 311, 391
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 2 cut(s) 136, 376
Hpy188I TCNGA 6 cut(s) 8, 14, 106, 126, 299, 525
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 2 cut(s) 136, 376
HpyAV CCTTC 6 cut(s) 153, 228, 280, 355, 500, 558
HpyCH4III ACNGT 2 cut(s) 249, 280
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 3 cut(s) 115, 173, 271
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 188, 431
HpyF3I CTNAG 1 cut(s) 53
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 3 cut(s) 338, 352, 406
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 5 cut(s) 106, 188, 202, 210, 422
LweI GCATC 1 cut(s) 160
MaeI CTAG 2 cut(s) 152, 317
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 481
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 3 cut(s) 179, 350, 563
MhlI GDGCHC 2 cut(s) 193, 207
MluCI AATT 3 cut(s) 415, 438, 542
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 5 cut(s) 50, 60, 64, 531, 547
MseI TTAA 1 cut(s) 414
MspA1I CMGCKG 1 cut(s) 476
MwoI GCNNNNNNNGC 3 cut(s) 179, 188, 431
NdeII GATC 1 cut(s) 3
NlaIII CATG 3 cut(s) 338, 352, 406
NmeAIII GCCGAG 1 cut(s) 172
PaeR7I CTCGAG 1 cut(s) 192
PceI AGGCCT 1 cut(s) 49
PfeI GAWTC 2 cut(s) 311, 391
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
Psp124BI GAGCTC 2 cut(s) 193, 207
PspXI VCTCGAGB 1 cut(s) 192
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 5 cut(s) 29, 119, 347, 498, 558
RsaNI GTAC 5 cut(s) 28, 118, 346, 497, 557
SacI GAGCTC 2 cut(s) 193, 207
SaqAI TTAA 1 cut(s) 414
Sau3AI GATC 1 cut(s) 3
ScaI AGTACT 1 cut(s) 29
SchI GAGTC 1 cut(s) 18
SduI GDGCHC 2 cut(s) 193, 207
SfaNI GCATC 1 cut(s) 160
Sfr274I CTCGAG 1 cut(s) 192
SlaI CTCGAG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
Sse9I AATT 3 cut(s) 415, 438, 542
SseBI AGGCCT 1 cut(s) 49
SspMI CTAG 2 cut(s) 152, 317
SstI GAGCTC 2 cut(s) 193, 207
StuI AGGCCT 1 cut(s) 49
TaaI ACNGT 2 cut(s) 249, 280
TaiI ACGT 1 cut(s) 39
TaqI TCGA 3 cut(s) 42, 193, 389
TasI AATT 3 cut(s) 415, 438, 542
TatI WGTACW 3 cut(s) 27, 117, 345
TfiI GAWTC 2 cut(s) 311, 391
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 2 cut(s) 334, 507
TspDTI ATGAA 2 cut(s) 35, 351
TspRI CASTG 2 cut(s) 334, 507
XapI RAATTY 1 cut(s) 542
XhoI CTCGAG 1 cut(s) 192
XspI CTAG 2 cut(s) 152, 317
ZrmI AGTACT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.