Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016616

Physical Location & Seq

Genomic Coordinates Reverse (-)

23933338 .. 23935050

Gene Structure 1713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAAAACGAAGTAAACGCAGGAACAGCAAGCAGTTCAAGATGGAACCCAACGAAAGATCAGATCACGCTACTGGAAAATCTTTACAAGGAAGGAATACGAACTCCGAGCGCCGATCAGATTCAGCAGATCACCGGTAGGCTTCGTGCGTACGGCCATATCGAAGGTAAAAACGTCTTTTACTGGTTCCAGAACCATAAGGCTAGGCAACGCCAAAAGCAGAAACAGGAGCGCATGGCTTACTTCAATCGCCTCCTCCACAAAACCTCCCGTTTCTTCTACCCCCCTCCTTGCTCAAACGTGGGTTGTGTCAGTCCGTACTATTTACAGCAAGCAAGTGATCATCATATGAATCAACATGGAAGTGTATACACAAACGATCTTCTTCACAGAAACAATGTGATGATTCCAAGTGGTGGCTACGAGAAACGGACAGTCACACAACATCAGAAACAACTTTCAGACATAAGAACAACAGCAGCCACAAGAATGCCAATTTCTCCGAGTTCACTCAGATTTGACAGATTTGCCCTCCGTGATAACTGTTATGCCGGTGAGGACATTAACGTCAATTCCAGTGGACGGAAAACACTCCCTCTTTTTCCTCTTCAGCCTTTGAATGCAAGTAATGCTGATGGTATGGGAAGTTCCAGTTTTGCCCTTGGTAGTGATTCTCCGGTGGATTGTTCTAGCGATGGAGCCGGCCGAGAGCAGCCGTTTATTGATTTCTTTTCTGGTGGTTCTACTTCTACTCGTTTCGATAGTAATGGTAATGGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008284 GO:0009628 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009889 GO:0009942 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010654 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0045165 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048859 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080167 GO:0090451 GO:0090691 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

260

Amino Acids

29.18

Weight (kDa)

9.17

Isoelectric Point (pI)

51.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	13 - 72	7.5e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59340
fragaria_vesca	FvH4_3g35730
malus_domestica	MD11G1111700.v1.1
prunus_persica	Prupe.6G080100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0063891
rosa_laevigata	RLG00000035688
rosa_multiflora	Rmu_sc0000552.1_g000023
rosa_roxburghii	Rroxscaffold_1G00016880
rosa_rugosa	Rorug05G0361000
rosa_samantha	Rh5AG419500 Rh5BG435400 Rh5CG458500 Rh5DG448500
rosa_wichuraiana	Rw5G039430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	566
AccB7I	CCANNNNNTGG	1 cut(s)	416
AccI	GTMKAC	1 cut(s)	369
AcoI	YGGCCR	2 cut(s)	154, 703
AcuI	CTGAAG	1 cut(s)	593
AfaI	GTAC	2 cut(s)	152, 320
AfiI	CCNNNNNNNGG	2 cut(s)	416, 582
AgeI	ACCGGT	1 cut(s)	134
AgsI	TTSAA	3 cut(s)	39, 247, 619
AoxI	GGCC	2 cut(s)	154, 703
ApeKI	GCWGC	2 cut(s)	479, 712
AsiGI	ACCGGT	1 cut(s)	134
AspLEI	GCGC	2 cut(s)	113, 234
AsuHPI	GGTGA	2 cut(s)	124, 566
BbvI	GCAGC	2 cut(s)	491, 724
BccI	CCATC	3 cut(s)	36, 629, 689
BceAI	ACGGC	2 cut(s)	169, 700
BclI	TGATCA	1 cut(s)	340
BfaI	CTAG	2 cut(s)	204, 690
BfoI	RGCGCY	1 cut(s)	114
BisI	GCNGC	2 cut(s)	480, 713
BlsI	GCNGC	2 cut(s)	481, 714
BmiI	GGNNCC	3 cut(s)	47, 188, 700
BsaJI	CCNNGG	1 cut(s)	661
BsaWI	WCCGGW	2 cut(s)	134, 676
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bsc4I	CCNNNNNNNGG	2 cut(s)	416, 582
Bse118I	RCCGGY	3 cut(s)	134, 551, 701
Bse1I	ACTGG	4 cut(s)	78, 188, 576, 651
BseDI	CCNNGG	1 cut(s)	661
BseLI	CCNNNNNNNGG	2 cut(s)	416, 582
BseMII	CTCAG	1 cut(s)	526
BseNI	ACTGG	4 cut(s)	78, 188, 576, 651
BseRI	GAGGAG	1 cut(s)	245
BseX3I	CGGCCG	1 cut(s)	703
BseXI	GCAGC	2 cut(s)	491, 724
Bsh1285I	CGRYCG	1 cut(s)	706
BshFI	GGCC	2 cut(s)	156, 705
BshTI	ACCGGT	1 cut(s)	134
BsiEI	CGRYCG	1 cut(s)	706
BsiSI	CCGG	4 cut(s)	135, 552, 677, 702
BsiWI	CGTACG	1 cut(s)	150
BslI	CCNNNNNNNGG	2 cut(s)	416, 582
BsmI	GAATGC	2 cut(s)	495, 625
BsnI	GGCC	2 cut(s)	156, 705
Bsp143I	GATC	6 cut(s)	58, 63, 115, 129, 340, 379
BspANI	GGCC	2 cut(s)	156, 705
BspCNI	CTCAG	1 cut(s)	525
BspLI	GGNNCC	3 cut(s)	47, 188, 700
BsrFI	RCCGGY	3 cut(s)	134, 551, 701
BsrI	ACTGG	4 cut(s)	78, 188, 576, 651
BssAI	RCCGGY	3 cut(s)	134, 551, 701
BssECI	CCNNGG	1 cut(s)	661
BssMI	GATC	6 cut(s)	58, 63, 115, 129, 340, 379
BssNAI	GTATAC	1 cut(s)	370
BssT1I	CCWWGG	1 cut(s)	661
Bst1107I	GTATAC	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	436, 545
Bst6I	CTCTTC	1 cut(s)	612
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstC8I	GCNNGC	3 cut(s)	31, 333, 703
BstDEI	CTNAG	1 cut(s)	512
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	113, 234
BstKTI	GATC	6 cut(s)	61, 66, 118, 132, 343, 382
BstMBI	GATC	6 cut(s)	58, 63, 115, 129, 340, 379
BstMCI	CGRYCG	1 cut(s)	706
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 629
BstV1I	GCAGC	2 cut(s)	491, 724
BstZ17I	GTATAC	1 cut(s)	370
BstZI	CGGCCG	1 cut(s)	703
BsuRI	GGCC	2 cut(s)	156, 705
BtgZI	GCGATG	1 cut(s)	708
BtsIMutI	CAGTG	1 cut(s)	583
Cac8I	GCNNGC	3 cut(s)	31, 333, 703
CfoI	GCGC	2 cut(s)	113, 234
Cfr10I	RCCGGY	3 cut(s)	134, 551, 701
Csp6I	GTAC	2 cut(s)	151, 319
CspAI	ACCGGT	1 cut(s)	134
CspCI	CAANNNNNGTGG	2 cut(s)	559, 594
CviAII	CATG	2 cut(s)	235, 359
CviQI	GTAC	2 cut(s)	151, 319
DdeI	CTNAG	1 cut(s)	512
DpnI	GATC	6 cut(s)	60, 65, 117, 131, 342, 381
DpnII	GATC	6 cut(s)	58, 63, 115, 129, 340, 379
DrdI	GACNNNNNNGTC	1 cut(s)	566
DseDI	GACNNNNNNGTC	1 cut(s)	566
EaeI	YGGCCR	2 cut(s)	154, 703
EagI	CGGCCG	1 cut(s)	703
Eam1104I	CTCTTC	1 cut(s)	612
EarI	CTCTTC	1 cut(s)	612
EclXI	CGGCCG	1 cut(s)	703
Eco130I	CCWWGG	1 cut(s)	661
Eco52I	CGGCCG	1 cut(s)	703
Eco57I	CTGAAG	1 cut(s)	593
EcoT14I	CCWWGG	1 cut(s)	661
ErhI	CCWWGG	1 cut(s)	661
FaeI	CATG	2 cut(s)	238, 362
FatI	CATG	2 cut(s)	234, 358
FauNDI	CATATG	1 cut(s)	348
FbaI	TGATCA	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	480, 713
Fsp4HI	GCNGC	2 cut(s)	480, 713
FspBI	CTAG	2 cut(s)	204, 690
GlaI	GCGC	2 cut(s)	112, 233
GluI	GCNGC	2 cut(s)	480, 713
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	156, 705
HapII	CCGG	4 cut(s)	135, 552, 677, 702
HhaI	GCGC	2 cut(s)	113, 234
Hin1II	CATG	2 cut(s)	238, 362
Hin6I	GCGC	2 cut(s)	111, 232
HinP1I	GCGC	2 cut(s)	111, 232
HinfI	GANTC	4 cut(s)	121, 352, 406, 671
HpaII	CCGG	4 cut(s)	135, 552, 677, 702
HphI	GGTGA	2 cut(s)	124, 566
Hpy166II	GTNNAC	4 cut(s)	16, 370, 509, 581
Hpy188I	TCNGA	7 cut(s)	63, 108, 120, 450, 463, 504, 515
Hpy188III	TCNNGA	2 cut(s)	39, 190
Hpy8I	GTNNAC	4 cut(s)	16, 370, 509, 581
HpyAV	CCTTC	2 cut(s)	86, 158
HpyCH4III	ACNGT	2 cut(s)	436, 545
HpyCH4IV	ACGT	3 cut(s)	174, 300, 567
HpyCH4V	TGCA	1 cut(s)	623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 629
HpyF3I	CTNAG	1 cut(s)	512
HpySE526I	ACGT	3 cut(s)	174, 300, 567
Hsp92II	CATG	2 cut(s)	238, 362
HspAI	GCGC	2 cut(s)	111, 232
KroI	GCCGGC	1 cut(s)	701
KroNI	GCCGGC	1 cut(s)	703
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	6 cut(s)	58, 63, 115, 129, 340, 379
LmnI	GCTCC	2 cut(s)	229, 698
Lsp1109I	GCAGC	2 cut(s)	491, 724
MaeI	CTAG	2 cut(s)	204, 690
MaeII	ACGT	3 cut(s)	174, 300, 567
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	6 cut(s)	60, 65, 117, 131, 342, 381
MboI	GATC	6 cut(s)	58, 63, 115, 129, 340, 379
MboII	GAAGA	4 cut(s)	268, 374, 377, 599
MluCI	AATT	2 cut(s)	495, 571
MnlI	CCTC	8 cut(s)	263, 266, 277, 297, 542, 550, 606, 615
MroNI	GCCGGC	1 cut(s)	701
MseI	TTAA	1 cut(s)	564
MslI	CAYNNNNRTG	2 cut(s)	363, 488
MspI	CCGG	4 cut(s)	135, 552, 677, 702
Mva1269I	GAATGC	2 cut(s)	495, 625
MwoI	GCNNNNNNNGC	2 cut(s)	26, 629
NaeI	GCCGGC	1 cut(s)	703
NdeI	CATATG	1 cut(s)	348
NdeII	GATC	6 cut(s)	58, 63, 115, 129, 340, 379
NgoMIV	GCCGGC	1 cut(s)	701
NlaIII	CATG	2 cut(s)	238, 362
NlaIV	GGNNCC	3 cut(s)	47, 188, 700
NmeAIII	GCCGAG	1 cut(s)	731
NmuCI	GTSAC	1 cut(s)	436
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	2 cut(s)	495, 625
PdiI	GCCGGC	1 cut(s)	703
PfeI	GAWTC	4 cut(s)	121, 352, 406, 671
Pfl23II	CGTACG	1 cut(s)	150
PflMI	CCANNNNNTGG	1 cut(s)	416
PinAI	ACCGGT	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	481, 714
PspLI	CGTACG	1 cut(s)	150
PspN4I	GGNNCC	3 cut(s)	47, 188, 700
PsrI	GAACNNNNNNTAC	2 cut(s)	631, 663
RsaI	GTAC	2 cut(s)	152, 320
RsaNI	GTAC	2 cut(s)	151, 319
RseI	CAYNNNNRTG	2 cut(s)	363, 488
SaqAI	TTAA	1 cut(s)	564
SatI	GCNGC	2 cut(s)	480, 713
Sau3AI	GATC	6 cut(s)	58, 63, 115, 129, 340, 379
SetI	ASST	5 cut(s)	169, 177, 269, 303, 570
SmiMI	CAYNNNNRTG	2 cut(s)	363, 488
Sse9I	AATT	2 cut(s)	495, 571
SspMI	CTAG	2 cut(s)	204, 690
StyI	CCWWGG	1 cut(s)	661
TaaI	ACNGT	2 cut(s)	436, 545
TaiI	ACGT	3 cut(s)	177, 303, 570
TaqI	TCGA	2 cut(s)	162, 759
TasI	AATT	2 cut(s)	495, 571
TfiI	GAWTC	4 cut(s)	121, 352, 406, 671
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TscAI	CASTG	1 cut(s)	583
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	2 cut(s)	479, 712
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	1 cut(s)	365
TspGWI	ACGGA	4 cut(s)	306, 445, 524, 598
TspRI	CASTG	1 cut(s)	583
Van91I	CCANNNNNTGG	1 cut(s)	416
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	2 cut(s)	204, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.