Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0016616

Physical Location & Seq

Genomic Coordinates Forward (+)

47623746 .. 47635612

Gene Structure 11867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0361000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAAATTTGGGATTTTGAATTGTGGATTTGATACTGGTGGGGTAGGAAAAAGTAGAGGAAATATCCAAGGTTTTTGGTTGCTGCTAGAAAAGATCCAAGTAGAGGAAGCTTTCAATAGAAGAAGAGATATCAGAAACAGTGAGCTGTCAAAATTTCCACGTTTTTTCAATTCAGTGATGGCACCGAAGGCTGTATCAAGAGGAACAAAAAGAATGTTAGGATATGGTGATGTTGAGGGCCATGATCATCAAGAGAAAATTCAGCAAACCTGCAGTACTCAAAACTCTGTTGGAACAATAACTGAATCTGATGGCAATGAATTCGTGAGGTCAGATCAAGGAGATCAAAGAGTATCTCATGTACAAACTGCTAGAGCATCAAACAGTTTGCGTGAAGATGACAGACAAAATTCTACTTTAGTCGTGTGCAGAGATTCATTATCGGTTTTGCTCCTACCTCCTATCTGTTCTTACAAATTGCCCCTGCCTACTCTTTTGCGTGATTACCCTGTCCGGCTTTCAAGTTTTGAGCTGCTGAACCAAAACAGAGCTCGCAGCGATGAAGACCGAGACGACGGCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008284 GO:0009628 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009889 GO:0009942 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010654 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0045165 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048859 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080167 GO:0090451 GO:0090691 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

194

Amino Acids

21.9

Weight (kDa)

7.69

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59340
fragaria_vesca	FvH4_3g35730
malus_domestica	MD11G1111700.v1.1
prunus_persica	Prupe.6G080100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0063891
rosa_laevigata	RLG00000035688
rosa_multiflora	Rmu_sc0000552.1_g000023
rosa_roxburghii	Rroxscaffold_1G00016880
rosa_rugosa	Rorug05G0361000
rosa_samantha	Rh5AG419500 Rh5BG435400 Rh5CG458500 Rh5DG448500
rosa_wichuraiana	Rw5G039430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	181
AclWI	GGATC	1 cut(s)	88
AcsI	RAATTY	5 cut(s)	5, 152, 258, 320, 409
AfaI	GTAC	2 cut(s)	277, 363
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	4 cut(s)	19, 115, 169, 522
AluBI	AGCT	4 cut(s)	110, 145, 532, 551
AluI	AGCT	4 cut(s)	110, 145, 532, 551
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	1 cut(s)	564
AlwI	GGATC	1 cut(s)	88
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	3 cut(s)	82, 532, 555
ApoI	RAATTY	5 cut(s)	5, 152, 258, 320, 409
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	1 cut(s)	239
BanI	GGYRCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	553
BbsI	GAAGAC	1 cut(s)	570
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	3 cut(s)	69, 519, 567
BccI	CCATC	2 cut(s)	172, 305
BcgI	CGANNNNNNTGC	2 cut(s)	304, 338
BclI	TGATCA	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	564
BfaI	CTAG	2 cut(s)	86, 372
BfmI	CTRYAG	1 cut(s)	271
BfuAI	ACCTGC	1 cut(s)	278
BisI	GCNGC	3 cut(s)	83, 533, 556
BlsI	GCNGC	3 cut(s)	84, 534, 557
BmcAI	AGTACT	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	183
BmsI	GCATC	1 cut(s)	386
BpiI	GAAGAC	1 cut(s)	570
BsaJI	CCNNGG	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	40
Bse3DI	GCAATG	1 cut(s)	322
BseDI	CCNNGG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	1 cut(s)	322
BseNI	ACTGG	1 cut(s)	40
BseXI	GCAGC	3 cut(s)	69, 519, 567
BsgI	GTGCAG	1 cut(s)	448
BshFI	GGCC	1 cut(s)	240
BshNI	GGYRCC	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	553
BsiSI	CCGG	1 cut(s)	514
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	564
BsmBI	CGTCTC	1 cut(s)	564
BsnI	GGCC	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp1407I	TGTACA	1 cut(s)	361
Bsp143I	GATC	4 cut(s)	93, 244, 334, 343
BspANI	GGCC	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	183
BspMAI	CTGCAG	1 cut(s)	275
BspMI	ACCTGC	1 cut(s)	278
BspPI	GGATC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	322
BsrGI	TGTACA	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	4 cut(s)	93, 244, 334, 343
BssT1I	CCWWGG	1 cut(s)	67
Bst4CI	ACNGT	2 cut(s)	140, 386
Bst6I	CTCTTC	1 cut(s)	118
BstAUI	TGTACA	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	553
BstKTI	GATC	4 cut(s)	96, 247, 337, 346
BstMAI	GTCTC	1 cut(s)	564
BstMBI	GATC	4 cut(s)	93, 244, 334, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	271
BstV1I	GCAGC	3 cut(s)	69, 519, 567
BstV2I	GAAGAC	1 cut(s)	570
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	240
BtgZI	GCGATG	1 cut(s)	573
BtsIMutI	CAGTG	2 cut(s)	145, 180
BveI	ACCTGC	1 cut(s)	278
Cac8I	GCNNGC	1 cut(s)	553
Cfr13I	GGNCC	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	276, 362
CviAII	CATG	2 cut(s)	242, 359
CviJI	RGCY	7 cut(s)	110, 145, 191, 240, 517, 532, 551
CviKI_1	RGCY	7 cut(s)	110, 145, 191, 240, 517, 532, 551
CviQI	GTAC	2 cut(s)	276, 362
DpnI	GATC	4 cut(s)	95, 246, 336, 345
DpnII	GATC	4 cut(s)	93, 244, 334, 343
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Ecl136II	GAGCTC	1 cut(s)	551
Eco130I	CCWWGG	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	553
Eco32I	GATATC	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	551
EcoICRI	GAGCTC	1 cut(s)	551
EcoRI	GAATTC	1 cut(s)	320
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	553
ErhI	CCWWGG	1 cut(s)	67
Esp3I	CGTCTC	1 cut(s)	564
FaeI	CATG	2 cut(s)	245, 362
FaiI	YATR	3 cut(s)	225, 243, 360
FatI	CATG	2 cut(s)	241, 358
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	3 cut(s)	83, 533, 556
FriOI	GRGCYC	1 cut(s)	553
Fsp4HI	GCNGC	3 cut(s)	83, 533, 556
FspBI	CTAG	2 cut(s)	86, 372
GluI	GCNGC	3 cut(s)	83, 533, 556
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	1 cut(s)	514
Hin1II	CATG	2 cut(s)	245, 362
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	2 cut(s)	305, 434
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	1 cut(s)	239
Hpy188I	TCNGA	3 cut(s)	134, 310, 334
Hpy188III	TCNNGA	3 cut(s)	198, 251, 325
Hpy99I	CGWCG	1 cut(s)	578
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	2 cut(s)	140, 386
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	2 cut(s)	273, 429
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	2 cut(s)	245, 362
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	4 cut(s)	93, 244, 334, 343
LmnI	GCTCC	1 cut(s)	456
LpnPI	CCDG	5 cut(s)	21, 283, 497, 522, 527
Lsp1109I	GCAGC	3 cut(s)	69, 519, 567
LweI	GCATC	1 cut(s)	386
MaeI	CTAG	2 cut(s)	86, 372
MaeII	ACGT	1 cut(s)	160
MalI	GATC	4 cut(s)	95, 246, 336, 345
MboI	GATC	4 cut(s)	93, 244, 334, 343
MboII	GAAGA	4 cut(s)	132, 135, 407, 575
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	553
MluCI	AATT	8 cut(s)	5, 19, 152, 169, 258, 320, 409, 476
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	6 cut(s)	50, 97, 194, 229, 321, 468
MspI	CCGG	1 cut(s)	514
MwoI	GCNNNNNNNGC	1 cut(s)	188
NdeII	GATC	4 cut(s)	93, 244, 334, 343
NlaIII	CATG	2 cut(s)	245, 362
NlaIV	GGNNCC	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	305, 434
PkrI	GCNGC	3 cut(s)	84, 534, 557
Psp124BI	GAGCTC	1 cut(s)	553
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	238
PstI	CTGCAG	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	93
RsaI	GTAC	2 cut(s)	277, 363
RsaNI	GTAC	2 cut(s)	276, 362
SacI	GAGCTC	1 cut(s)	553
SatI	GCNGC	3 cut(s)	83, 533, 556
Sau3AI	GATC	4 cut(s)	93, 244, 334, 343
Sau96I	GGNCC	1 cut(s)	238
ScaI	AGTACT	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	553
SetI	ASST	9 cut(s)	73, 112, 147, 163, 272, 332, 460, 534, 553
SfaNI	GCATC	1 cut(s)	386
SfcI	CTRYAG	1 cut(s)	271
Sse9I	AATT	8 cut(s)	5, 19, 152, 169, 258, 320, 409, 476
SspMI	CTAG	2 cut(s)	86, 372
SstI	GAGCTC	1 cut(s)	553
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	2 cut(s)	140, 386
TaiI	ACGT	1 cut(s)	163
TaqII	GACCGA	1 cut(s)	582
TasI	AATT	8 cut(s)	5, 19, 152, 169, 258, 320, 409, 476
TatI	WGTACW	2 cut(s)	275, 361
TfiI	GAWTC	2 cut(s)	305, 434
TscAI	CASTG	2 cut(s)	145, 180
TseI	GCWGC	3 cut(s)	82, 532, 555
TspDTI	ATGAA	4 cut(s)	17, 333, 426, 576
TspRI	CASTG	2 cut(s)	145, 180
XapI	RAATTY	5 cut(s)	5, 152, 258, 320, 409
XspI	CTAG	2 cut(s)	86, 372
ZrmI	AGTACT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.