Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0016616

Physical Location & Seq

Genomic Coordinates Forward (+)

9884491 .. 9886622

Gene Structure 2132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1111700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTTTTCAGAGATATTCAGCACCAAAAACAATACGCATGCGGGTTCTGGGCGTGCCGGGGACAGCGGGAGTACATCCCGATGGAACCCAACAAAGGAGCAGATTGATATGCTTGAGAATTTTTACAAGCAAGGAGTGAGGACGCCAAGTGCTGAGCAAATACAGCAGATAACGAGTAGCCTGAAGGCTTTTGGTCACATCGAGGGGAAGAATGTTTTTTACTGGTTTCAGAATCACAAGGCAAGGCAGAGGCAGAAGCAGAAGCAAGAGAGCATAGCTTATAATCGCTTGTTACATAGAAGGACAACTCAGCCAATTTTTCTTCCTCCTTATGATTTGAATCTTCCTTGCCCAAATGTAATGTGCAGCCCATACTACGTACCAGTTCATAGTGAGCTAGGGTTCTATCCGCAGTCTCCATATCCCAATAAGGTGCCTCTCCCTGGTGTTCCTAGTGTAGTCAAGAGGAGACCAAGGGCCGAGAAATTGGAAAAGCGAAGAACCACCTGCACTACTGGTGGCGCTGGTTATGAACCCATGAATCCACACAATGGATATAATACTAGTGGAGGCAGCGATATGATCAACGATGCCACGAGCAAACTTATCAGCAAATGTGACCAACAAACACTGCCGCTTTTTCCTTTGCAACCCACTGGCATTTTGCAGCAAGGAAGAGAAGATCAAAACTACCCTTCTACTGTTAACGATGCTGACTGTTCCTCTGCTGCTCTAATTGGCTCTATTGCTGAACAGATTGTTGGTGACCGGCAGCCTTTCTATGATTTTTTCTCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008284 GO:0009628 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009889 GO:0009942 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010654 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0045165 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048859 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080167 GO:0090451 GO:0090691 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

267

Amino Acids

29.86

Weight (kDa)

9.02

Isoelectric Point (pI)

69.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	26 - 85	7.3e-15	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59340
fragaria_vesca	FvH4_3g35730
malus_domestica	MD11G1111700.v1.1
prunus_persica	Prupe.6G080100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0063891
rosa_laevigata	RLG00000035688
rosa_multiflora	Rmu_sc0000552.1_g000023
rosa_roxburghii	Rroxscaffold_1G00016880
rosa_rugosa	Rorug05G0361000
rosa_samantha	Rh5AG419500 Rh5BG435400 Rh5CG458500 Rh5DG448500
rosa_wichuraiana	Rw5G039430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
AarI	CACCTGC	1 cut(s)	515
Acc36I	ACCTGC	1 cut(s)	515
AccB1I	GGYRCC	1 cut(s)	433
AccB7I	CCANNNNNTGG	1 cut(s)	551
AciI	CCGC	4 cut(s)	41, 66, 410, 635
AcsI	RAATTY	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	203
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	2 cut(s)	73, 381
AfiI	CCNNNNNNNGG	3 cut(s)	94, 443, 551
AgsI	TTSAA	1 cut(s)	340
AhlI	ACTAGT	1 cut(s)	563
AjnI	CCWGG	1 cut(s)	442
AjuI	GAANNNNNNNTTGG	2 cut(s)	744, 776
AluBI	AGCT	2 cut(s)	278, 397
AluI	AGCT	2 cut(s)	278, 397
Alw26I	GTCTC	2 cut(s)	420, 463
AoxI	GGCC	1 cut(s)	477
ApeKI	GCWGC	5 cut(s)	366, 573, 667, 728, 772
ApoI	RAATTY	1 cut(s)	118
AspLEI	GCGC	1 cut(s)	524
AspS9I	GGNCC	1 cut(s)	477
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	776
BanI	GGYRCC	1 cut(s)	433
BauI	CACGAG	1 cut(s)	595
BbvI	GCAGC	5 cut(s)	378, 585, 679, 715, 784
BccI	CCATC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	444
BclI	TGATCA	1 cut(s)	582
BcnI	CCSGG	1 cut(s)	58
BcoDI	GTCTC	2 cut(s)	420, 463
BcuI	ACTAGT	1 cut(s)	563
BfaI	CTAG	3 cut(s)	398, 453, 564
BfoI	RGCGCY	1 cut(s)	525
BfuAI	ACCTGC	1 cut(s)	515
BisI	GCNGC	6 cut(s)	367, 574, 635, 668, 729, 773
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	6 cut(s)	368, 575, 636, 669, 730, 774
Bme1390I	CCNGG	2 cut(s)	58, 444
BmgT120I	GGNCC	1 cut(s)	477
BmiI	GGNNCC	2 cut(s)	86, 435
BmrFI	CCNGG	2 cut(s)	58, 444
BmsI	GCATC	2 cut(s)	580, 700
Bpu1102I	GCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	58
BsaAI	YACGTR	1 cut(s)	379
BsaBI	GATNNNNATC	1 cut(s)	339
BsaHI	GRCGYC	1 cut(s)	143
BsaI	GGTCTC	1 cut(s)	463
BsaJI	CCNNGG	3 cut(s)	57, 442, 473
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 443, 551
Bse118I	RCCGGY	1 cut(s)	768
Bse1I	ACTGG	4 cut(s)	227, 383, 520, 661
Bse8I	GATNNNNATC	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	444
BseDI	CCNNGG	3 cut(s)	57, 442, 473
BseGI	GGATG	1 cut(s)	74
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	3 cut(s)	94, 443, 551
BseMII	CTCAG	2 cut(s)	144, 323
BseNI	ACTGG	4 cut(s)	227, 383, 520, 661
BseRI	GAGGAG	1 cut(s)	481
BseXI	GCAGC	5 cut(s)	378, 585, 679, 715, 784
BsgI	GTGCAG	2 cut(s)	385, 493
BshFI	GGCC	1 cut(s)	479
BshNI	GGYRCC	1 cut(s)	433
BsiSI	CCGG	2 cut(s)	57, 769
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	3 cut(s)	94, 443, 551
BsmAI	GTCTC	2 cut(s)	420, 463
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	479
Bso31I	GGTCTC	1 cut(s)	463
Bsp143I	GATC	2 cut(s)	582, 682
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	4 cut(s)	41, 66, 410, 635
BspANI	GGCC	1 cut(s)	479
BspCNI	CTCAG	2 cut(s)	145, 322
BspLI	GGNNCC	2 cut(s)	86, 435
BspMI	ACCTGC	1 cut(s)	515
BspT107I	GGYRCC	1 cut(s)	433
BspTNI	GGTCTC	1 cut(s)	463
BsrFI	RCCGGY	1 cut(s)	768
BsrI	ACTGG	4 cut(s)	227, 383, 520, 661
BssAI	RCCGGY	1 cut(s)	768
BssECI	CCNNGG	3 cut(s)	57, 442, 473
BssMI	GATC	2 cut(s)	582, 682
BssNI	GRCGYC	1 cut(s)	143
BssSI	CACGAG	1 cut(s)	595
BssT1I	CCWWGG	1 cut(s)	473
Bst2BI	CACGAG	1 cut(s)	595
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	2 cut(s)	703, 719
Bst6I	CTCTTC	1 cut(s)	670
BstACI	GRCGYC	1 cut(s)	143
BstBAI	YACGTR	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	39, 54
BstDEI	CTNAG	2 cut(s)	153, 309
BstEII	GGTNACC	1 cut(s)	764
BstF5I	GGATG	1 cut(s)	74
BstH2I	RGCGCY	1 cut(s)	525
BstHHI	GCGC	1 cut(s)	524
BstKTI	GATC	2 cut(s)	585, 685
BstMAI	GTCTC	2 cut(s)	420, 463
BstMBI	GATC	2 cut(s)	582, 682
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	444
BstNSI	RCATGY	1 cut(s)	41
BstPI	GGTNACC	1 cut(s)	764
BstSCI	CCNGG	2 cut(s)	56, 442
BstSNI	TACGTA	1 cut(s)	379
BstV1I	GCAGC	5 cut(s)	378, 585, 679, 715, 784
BsuRI	GGCC	1 cut(s)	479
BtsCI	GGATG	1 cut(s)	74
BtsI	GCAGTG	1 cut(s)	629
BtsIMutI	CAGTG	2 cut(s)	629, 654
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	39, 54
CfoI	GCGC	1 cut(s)	524
Cfr10I	RCCGGY	1 cut(s)	768
Cfr13I	GGNCC	1 cut(s)	477
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	2 cut(s)	72, 380
CviAII	CATG	2 cut(s)	38, 538
CviJI	RGCY	9 cut(s)	180, 188, 278, 313, 369, 397, 479, 741, 775
CviKI_1	RGCY	9 cut(s)	180, 188, 278, 313, 369, 397, 479, 741, 775
CviQI	GTAC	2 cut(s)	72, 380
DdeI	CTNAG	2 cut(s)	153, 309
DpnI	GATC	2 cut(s)	584, 684
DpnII	GATC	2 cut(s)	582, 682
Eam1104I	CTCTTC	1 cut(s)	670
EarI	CTCTTC	1 cut(s)	670
Eco105I	TACGTA	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	473
Eco31I	GGTCTC	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	203
Eco91I	GGTNACC	1 cut(s)	764
EcoO65I	GGTNACC	1 cut(s)	764
EcoRII	CCWGG	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	473
FaeI	CATG	2 cut(s)	41, 541
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	2 cut(s)	37, 537
FauI	CCCGC	2 cut(s)	34, 59
FbaI	TGATCA	1 cut(s)	582
Fnu4HI	GCNGC	6 cut(s)	367, 574, 635, 668, 729, 773
FokI	GGATG	1 cut(s)	61
Fsp4HI	GCNGC	6 cut(s)	367, 574, 635, 668, 729, 773
FspBI	CTAG	3 cut(s)	398, 453, 564
GlaI	GCGC	1 cut(s)	523
GluI	GCNGC	6 cut(s)	367, 574, 635, 668, 729, 773
HaeII	RGCGCY	1 cut(s)	525
HaeIII	GGCC	1 cut(s)	479
HapII	CCGG	2 cut(s)	57, 769
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	1 cut(s)	524
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	41, 541
Hin6I	GCGC	1 cut(s)	522
HinP1I	GCGC	1 cut(s)	522
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HinfI	GANTC	3 cut(s)	232, 340, 541
HpaI	GTTAAC	1 cut(s)	706
HpaII	CCGG	2 cut(s)	57, 769
HphI	GGTGA	1 cut(s)	776
Hpy166II	GTNNAC	1 cut(s)	706
Hpy188I	TCNGA	2 cut(s)	10, 231
Hpy188III	TCNNGA	2 cut(s)	78, 463
Hpy8I	GTNNAC	1 cut(s)	706
HpyAV	CCTTC	3 cut(s)	178, 294, 705
HpyCH4III	ACNGT	2 cut(s)	703, 719
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	5 cut(s)	366, 510, 649, 667, 797
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	2 cut(s)	153, 309
HpySE526I	ACGT	1 cut(s)	378
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	2 cut(s)	41, 541
HspAI	GCGC	1 cut(s)	522
Ksp22I	TGATCA	1 cut(s)	582
KspAI	GTTAAC	1 cut(s)	706
Kzo9I	GATC	2 cut(s)	582, 682
LmnI	GCTCC	1 cut(s)	97
Lsp1109I	GCAGC	5 cut(s)	378, 585, 679, 715, 784
LweI	GCATC	2 cut(s)	580, 700
MaeI	CTAG	3 cut(s)	398, 453, 564
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	4 cut(s)	194, 291, 617, 764
MalI	GATC	2 cut(s)	584, 684
MboI	GATC	2 cut(s)	582, 682
MboII	GAAGA	6 cut(s)	220, 314, 335, 510, 687, 692
MluCI	AATT	4 cut(s)	118, 315, 485, 735
MnlI	CCTC	8 cut(s)	132, 196, 243, 336, 447, 459, 563, 733
MseI	TTAA	1 cut(s)	705
MslI	CAYNNNNRTG	1 cut(s)	79
MspA1I	CMGCKG	1 cut(s)	66
MspI	CCGG	2 cut(s)	57, 769
MspR9I	CCNGG	2 cut(s)	58, 444
MvaI	CCWGG	1 cut(s)	444
MwoI	GCNNNNNNNGC	1 cut(s)	163
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	2 cut(s)	582, 682
NlaIII	CATG	2 cut(s)	41, 541
NlaIV	GGNNCC	2 cut(s)	86, 435
NmeAIII	GCCGAG	1 cut(s)	505
NmuCI	GTSAC	3 cut(s)	194, 617, 764
NspI	RCATGY	1 cut(s)	41
PaeI	GCATGC	1 cut(s)	41
PaqCI	CACCTGC	1 cut(s)	515
PfeI	GAWTC	3 cut(s)	232, 340, 541
PflMI	CCANNNNNTGG	1 cut(s)	551
PkrI	GCNGC	6 cut(s)	368, 575, 636, 669, 730, 774
Ppu21I	YACGTR	1 cut(s)	379
PsiI	TTATAA	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	442
PspEI	GGTNACC	1 cut(s)	764
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	2 cut(s)	86, 435
PspPI	GGNCC	1 cut(s)	477
RsaI	GTAC	2 cut(s)	73, 381
RsaNI	GTAC	2 cut(s)	72, 380
RseI	CAYNNNNRTG	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	705
SatI	GCNGC	6 cut(s)	367, 574, 635, 668, 729, 773
Sau3AI	GATC	2 cut(s)	582, 682
Sau96I	GGNCC	1 cut(s)	477
ScrFI	CCNGG	2 cut(s)	58, 444
SetI	ASST	5 cut(s)	280, 381, 399, 435, 509
SfaNI	GCATC	2 cut(s)	580, 700
SmiMI	CAYNNNNRTG	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
SnaBI	TACGTA	1 cut(s)	379
SpeI	ACTAGT	1 cut(s)	563
SphI	GCATGC	1 cut(s)	41
Sse9I	AATT	4 cut(s)	118, 315, 485, 735
SsiI	CCGC	4 cut(s)	41, 66, 410, 635
SspMI	CTAG	3 cut(s)	398, 453, 564
StyD4I	CCNGG	2 cut(s)	56, 442
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	2 cut(s)	703, 719
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	1 cut(s)	201
TasI	AATT	4 cut(s)	118, 315, 485, 735
TatI	WGTACW	1 cut(s)	71
TauI	GCSGC	1 cut(s)	637
TfiI	GAWTC	3 cut(s)	232, 340, 541
Tru1I	TTAA	1 cut(s)	705
Tru9I	TTAA	1 cut(s)	705
TscAI	CASTG	2 cut(s)	636, 661
TseFI	GTSAC	3 cut(s)	194, 617, 764
TseI	GCWGC	5 cut(s)	366, 573, 667, 728, 772
Tsp45I	GTSAC	3 cut(s)	194, 617, 764
TspDTI	ATGAA	3 cut(s)	377, 546, 554
TspRI	CASTG	2 cut(s)	636, 661
Van91I	CCANNNNNTGG	1 cut(s)	551
XapI	RAATTY	1 cut(s)	118
XceI	RCATGY	1 cut(s)	41
XspI	CTAG	3 cut(s)	398, 453, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.