Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0016616

Physical Location & Seq

Genomic Coordinates Reverse (-)

72337484 .. 72339388

Gene Structure 1905 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG419500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGAGCGCGAAGATCAGCACGTAAAGAACGGTGGATTGGCACATGGAGTGGGGCTGGAGAACACGACGAGGTGGAATCCGACCAAGGAGCAGATAACTATGCTGGAGAATCTGTATGAGCAAGGGGTGAGGACTCCCAGTGCGGAATTCATACAGGCGGTAACGGCGAGGCTCAGGGCTTATGGTCACATTGAGGGGAAGAATGTGTTTTATTGGTTTCAGAATCACAAAGCGAGGCAGAGACAGAAGGAGAAGCAGGAGGCTAGCTTGGCTTATTTCAACCGCTTTCTCCATAAGGCGGCGGCCTCTCAGTACCCACTATATCCTCCTCCCCAATATCCTTGCGCAAATGTGATCTGCAGCCCCTATTATATACCTCCAGTGCCAAGTGAAATAGGGTTCTATGCACAATCTCATCCCAAGGTGCCTCCACAATCTGTTGGGGTAAAGAGGAGACCAAGAATCGAGAAACTGGACGTGCCAACAAGAACTTGCAGTGGCGGTGGTAGTGGAGGGTATGAGCCAATGCGCCATGGATATGGCAGAGGGGGCTGTATTGATGTCAATGATGCCACTAACAGATTAATGAGCAACTCTGATGATCCAGAAACGCTGCCACTGTTTCCTTTGACACCCACAGGCCTCCTACAGGGCAGAGATGAAGGCCCATCTACTTCAGATGGTAATTATGCTCAGAATTCGACTGCTCTCGTTAGCTCTTCTGGTATCGTAGAGGGTCATGGTGACCAGCCTAGTTTCTACGATTTTTTCAGTGGAGGACAAGGCAGTTGTGACAGATTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008284 GO:0009628 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009889 GO:0009942 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010654 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0045165 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048859 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080167 GO:0090451 GO:0090691 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

268

Amino Acids

29.66

Weight (kDa)

7.08

Isoelectric Point (pI)

56.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	23 - 82	9.2e-13	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59340
fragaria_vesca	FvH4_3g35730
malus_domestica	MD11G1111700.v1.1
prunus_persica	Prupe.6G080100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0063891
rosa_laevigata	RLG00000035688
rosa_multiflora	Rmu_sc0000552.1_g000023
rosa_roxburghii	Rroxscaffold_1G00016880
rosa_rugosa	Rorug05G0361000
rosa_samantha	Rh5AG419500 Rh5BG435400 Rh5CG458500 Rh5DG448500
rosa_wichuraiana	Rw5G039430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	346
AccB1I	GGYRCC	1 cut(s)	424
AccII	CGCG	1 cut(s)	9
AciI	CCGC	6 cut(s)	143, 158, 283, 299, 302, 501
AclWI	GGATC	1 cut(s)	596
AcsI	RAATTY	2 cut(s)	146, 697
AcuI	CTGAAG	1 cut(s)	660
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	2 cut(s)	298, 649
AgsI	TTSAA	2 cut(s)	280, 802
AjiI	CACGTC	1 cut(s)	478
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	2 cut(s)	267, 717
AluI	AGCT	2 cut(s)	267, 717
Alw26I	GTCTC	2 cut(s)	235, 448
AlwI	GGATC	1 cut(s)	596
AoxI	GGCC	3 cut(s)	303, 640, 664
ApeKI	GCWGC	2 cut(s)	360, 613
ApoI	RAATTY	2 cut(s)	146, 697
AseI	ATTAAT	1 cut(s)	584
AspLEI	GCGC	3 cut(s)	9, 347, 531
AspS9I	GGNCC	1 cut(s)	665
AsuHPI	GGTGA	2 cut(s)	139, 755
AsuNHI	GCTAGC	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	424
BbvI	GCAGC	2 cut(s)	372, 600
BccI	CCATC	2 cut(s)	674, 676
BceAI	ACGGC	1 cut(s)	180
BcoDI	GTCTC	2 cut(s)	235, 448
BfaI	CTAG	2 cut(s)	264, 753
BfmI	CTRYAG	2 cut(s)	358, 647
BisI	GCNGC	4 cut(s)	300, 303, 361, 614
BlsI	GCNGC	4 cut(s)	301, 304, 362, 615
BmgBI	CACGTC	1 cut(s)	478
BmgT120I	GGNCC	1 cut(s)	665
BmiI	GGNNCC	1 cut(s)	426
BmrI	ACTGGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	559
BmtI	GCTAGC	1 cut(s)	267
BmuI	ACTGGG	1 cut(s)	132
BpmI	CTGGAG	3 cut(s)	77, 125, 363
Bpu10I	CCTNAGC	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	22
BsaI	GGTCTC	1 cut(s)	448
BsaJI	CCNNGG	3 cut(s)	84, 420, 532
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 649
Bse1I	ACTGG	3 cut(s)	138, 380, 477
BseDI	CCNNGG	3 cut(s)	84, 420, 532
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	2 cut(s)	298, 649
BseMII	CTCAG	3 cut(s)	187, 323, 707
BseNI	ACTGG	3 cut(s)	138, 380, 477
BseRI	GAGGAG	2 cut(s)	318, 466
BseXI	GCAGC	2 cut(s)	372, 600
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	3 cut(s)	305, 642, 666
BshNI	GGYRCC	1 cut(s)	424
BslI	CCNNNNNNNGG	2 cut(s)	298, 649
BsmAI	GTCTC	2 cut(s)	235, 448
BsnI	GGCC	3 cut(s)	305, 642, 666
Bso31I	GGTCTC	1 cut(s)	448
Bsp143I	GATC	3 cut(s)	13, 354, 601
Bsp19I	CCATGG	1 cut(s)	532
BspACI	CCGC	6 cut(s)	143, 158, 283, 299, 302, 501
BspANI	GGCC	3 cut(s)	305, 642, 666
BspCNI	CTCAG	3 cut(s)	186, 322, 706
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	426
BspMAI	CTGCAG	1 cut(s)	362
BspOI	GCTAGC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	596
BspQI	GCTCTTC	1 cut(s)	724
BspT107I	GGYRCC	1 cut(s)	424
BspTNI	GGTCTC	1 cut(s)	448
BsrI	ACTGG	3 cut(s)	138, 380, 477
BssECI	CCNNGG	3 cut(s)	84, 420, 532
BssMI	GATC	3 cut(s)	13, 354, 601
BssT1I	CCWWGG	3 cut(s)	84, 420, 532
Bst4CI	ACNGT	2 cut(s)	32, 621
Bst6I	CTCTTC	1 cut(s)	724
BstBAI	YACGTR	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	3 cut(s)	173, 309, 693
BstDSI	CCRYGG	1 cut(s)	532
BstEII	GGTNACC	1 cut(s)	743
BstENI	CCTNNNNNAGG	1 cut(s)	647
BstF5I	GGATG	1 cut(s)	415
BstFNI	CGCG	1 cut(s)	9
BstHHI	GCGC	3 cut(s)	9, 347, 531
BstKTI	GATC	3 cut(s)	16, 357, 604
BstMAI	GTCTC	2 cut(s)	235, 448
BstMBI	GATC	3 cut(s)	13, 354, 601
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 269, 549
BstPI	GGTNACC	1 cut(s)	743
BstSFI	CTRYAG	2 cut(s)	358, 647
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	372, 600
BstXI	CCANNNNNNTGG	1 cut(s)	539
BsuRI	GGCC	3 cut(s)	305, 642, 666
BtgI	CCRYGG	1 cut(s)	532
BtrI	CACGTC	1 cut(s)	478
BtsCI	GGATG	1 cut(s)	415
BtsI	GCAGTG	1 cut(s)	502
BtsIMutI	CAGTG	5 cut(s)	145, 387, 502, 617, 778
Cac8I	GCNNGC	1 cut(s)	265
CfoI	GCGC	3 cut(s)	9, 347, 531
Cfr13I	GGNCC	1 cut(s)	665
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	3 cut(s)	44, 533, 740
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	3 cut(s)	173, 309, 693
DpnI	GATC	3 cut(s)	15, 356, 603
DpnII	GATC	3 cut(s)	13, 354, 601
Eam1104I	CTCTTC	1 cut(s)	724
EarI	CTCTTC	1 cut(s)	724
Eco130I	CCWWGG	3 cut(s)	84, 420, 532
Eco147I	AGGCCT	1 cut(s)	642
Eco31I	GGTCTC	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	660
Eco91I	GGTNACC	1 cut(s)	743
EcoNI	CCTNNNNNAGG	1 cut(s)	647
EcoO65I	GGTNACC	1 cut(s)	743
EcoRI	GAATTC	2 cut(s)	146, 697
EcoT14I	CCWWGG	3 cut(s)	84, 420, 532
ErhI	CCWWGG	3 cut(s)	84, 420, 532
FaeI	CATG	3 cut(s)	47, 536, 743
FatI	CATG	3 cut(s)	43, 532, 739
Fnu4HI	GCNGC	4 cut(s)	300, 303, 361, 614
FokI	GGATG	1 cut(s)	402
Fsp4HI	GCNGC	4 cut(s)	300, 303, 361, 614
FspBI	CTAG	2 cut(s)	264, 753
FspI	TGCGCA	1 cut(s)	346
GlaI	GCGC	3 cut(s)	8, 346, 530
GluI	GCNGC	4 cut(s)	300, 303, 361, 614
GsuI	CTGGAG	3 cut(s)	77, 125, 363
HaeIII	GGCC	3 cut(s)	305, 642, 666
HhaI	GCGC	3 cut(s)	9, 347, 531
Hin1II	CATG	3 cut(s)	47, 536, 743
Hin6I	GCGC	3 cut(s)	7, 345, 529
HinP1I	GCGC	3 cut(s)	7, 345, 529
HinfI	GANTC	5 cut(s)	76, 109, 133, 223, 462
HphI	GGTGA	2 cut(s)	139, 755
Hpy188I	TCNGA	5 cut(s)	81, 222, 598, 679, 696
Hpy188III	TCNNGA	2 cut(s)	466, 605
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	2 cut(s)	241, 656
HpyCH4III	ACNGT	2 cut(s)	32, 621
HpyCH4IV	ACGT	2 cut(s)	21, 477
HpyCH4V	TGCA	3 cut(s)	360, 407, 495
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 269, 549
HpyF3I	CTNAG	3 cut(s)	173, 309, 693
HpySE526I	ACGT	2 cut(s)	21, 477
Hsp92II	CATG	3 cut(s)	47, 536, 743
HspAI	GCGC	3 cut(s)	7, 345, 529
Kzo9I	GATC	3 cut(s)	13, 354, 601
LguI	GCTCTTC	1 cut(s)	724
LmnI	GCTCC	2 cut(s)	4, 88
Lsp1109I	GCAGC	2 cut(s)	372, 600
LweI	GCATC	1 cut(s)	559
MaeI	CTAG	2 cut(s)	264, 753
MaeII	ACGT	2 cut(s)	21, 477
MaeIII	GTNAC	4 cut(s)	160, 185, 743, 791
MalI	GATC	3 cut(s)	15, 356, 603
MboI	GATC	3 cut(s)	13, 354, 601
MboII	GAAGA	3 cut(s)	23, 211, 711
MluCI	AATT	4 cut(s)	146, 685, 697, 802
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	1 cut(s)	104
MseI	TTAA	1 cut(s)	584
MslI	CAYNNNNRTG	1 cut(s)	537
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	3 cut(s)	164, 269, 549
NcoI	CCATGG	1 cut(s)	532
NdeII	GATC	3 cut(s)	13, 354, 601
NheI	GCTAGC	1 cut(s)	263
NlaIII	CATG	3 cut(s)	47, 536, 743
NlaIV	GGNNCC	1 cut(s)	426
NmuCI	GTSAC	3 cut(s)	185, 743, 791
NsbI	TGCGCA	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	642
PciSI	GCTCTTC	1 cut(s)	724
PfeI	GAWTC	4 cut(s)	76, 109, 223, 462
PkrI	GCNGC	4 cut(s)	301, 304, 362, 615
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Ppu21I	YACGTR	1 cut(s)	22
PshBI	ATTAAT	1 cut(s)	584
PspEI	GGTNACC	1 cut(s)	743
PspN4I	GGNNCC	1 cut(s)	426
PspPI	GGNCC	1 cut(s)	665
PstI	CTGCAG	1 cut(s)	362
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
RseI	CAYNNNNRTG	1 cut(s)	537
SapI	GCTCTTC	1 cut(s)	724
SaqAI	TTAA	1 cut(s)	584
SatI	GCNGC	4 cut(s)	300, 303, 361, 614
Sau3AI	GATC	3 cut(s)	13, 354, 601
Sau96I	GGNCC	1 cut(s)	665
SchI	GAGTC	1 cut(s)	127
SetI	ASST	7 cut(s)	24, 74, 269, 379, 426, 480, 719
SfaNI	GCATC	1 cut(s)	559
SfcI	CTRYAG	2 cut(s)	358, 647
SmiMI	CAYNNNNRTG	1 cut(s)	537
Sse9I	AATT	4 cut(s)	146, 685, 697, 802
SseBI	AGGCCT	1 cut(s)	642
SsiI	CCGC	6 cut(s)	143, 158, 283, 299, 302, 501
SspMI	CTAG	2 cut(s)	264, 753
StuI	AGGCCT	1 cut(s)	642
StyI	CCWWGG	3 cut(s)	84, 420, 532
TaaI	ACNGT	2 cut(s)	32, 621
TaiI	ACGT	2 cut(s)	24, 480
TaqI	TCGA	2 cut(s)	465, 701
TasI	AATT	4 cut(s)	146, 685, 697, 802
TauI	GCSGC	2 cut(s)	302, 305
TfiI	GAWTC	4 cut(s)	76, 109, 223, 462
Tru1I	TTAA	1 cut(s)	584
Tru9I	TTAA	1 cut(s)	584
TscAI	CASTG	5 cut(s)	145, 387, 502, 624, 778
TseFI	GTSAC	3 cut(s)	185, 743, 791
TseI	GCWGC	2 cut(s)	360, 613
Tsp45I	GTSAC	3 cut(s)	185, 743, 791
TspDTI	ATGAA	2 cut(s)	139, 675
TspRI	CASTG	5 cut(s)	145, 387, 502, 624, 778
VspI	ATTAAT	1 cut(s)	584
XagI	CCTNNNNNAGG	1 cut(s)	647
XapI	RAATTY	2 cut(s)	146, 697
XspI	CTAG	2 cut(s)	264, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.