Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016616

Physical Location & Seq

Genomic Coordinates Forward (+)

5453740 .. 5455174

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G080100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCTTGAGAATTTTTACAGGCAAGGCATAAGGACGCCGAGCGCCGAGCAAATACAGCAGTTGACAAGTAGGCTGAGGGCTTATGGCCACATCGAGGGCAAAAATGTGTTTTATTGGTTTCAAAATCACAAGGCAAGACAGAGGCAGAAGCAGAAGCAAGAGAGCGTAGCTTATCTTAATCCCTTTTTCCATATGACATCCCAGTCTATGTTTCCTCCTCCTCCTCCTCCTCTTAATCATCATCCTTGCCCAAATGTGATGTGCAGCCCATATTACATACCAGTTCAGAATGAATTAGGGTTCTATCAACAATCTCCATATCCCTATAAGGTGCCTTTTCCTGGTGGAGCCAAGGGGAAACCAAGGACAGAGAAATCCGTTAAGCCAAGAACCACCCACACTGGTGGCTCTGGATATGAACCTATGCCACACGGATATAGTACTAGCGGAGGCGGCTACATGATCAACGATGTCGCGAACGAATCGACCGGCAGATGTGATCAAGAAACACTGCCACTCTTTCCTTTGCAACCCACAGGCATTTTACAAGGGAGAGAATATCAAAACCCTTCATGTGGTTCTGGTACTGCTAATTATGCTGACAATTCCACTGCTGCTCTAATTGGCTCTAATTCTGAGATTGTTGGTGACCAACCTTTCTATGACTTTTTCTCTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008284 GO:0009628 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009889 GO:0009942 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010654 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0045165 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048859 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080167 GO:0090451 GO:0090691 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

227

Amino Acids

25.3

Weight (kDa)

8.6

Isoelectric Point (pI)

63.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59340
fragaria_vesca	FvH4_3g35730
malus_domestica	MD11G1111700.v1.1
prunus_persica	Prupe.6G080100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0063891
rosa_laevigata	RLG00000035688
rosa_multiflora	Rmu_sc0000552.1_g000023
rosa_roxburghii	Rroxscaffold_1G00016880
rosa_rugosa	Rorug05G0361000
rosa_samantha	Rh5AG419500 Rh5BG435400 Rh5CG458500 Rh5DG448500
rosa_wichuraiana	Rw5G039430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	202
AccB1I	GGYRCC	1 cut(s)	331
AccII	CGCG	1 cut(s)	476
AciI	CCGC	2 cut(s)	447, 453
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	1 cut(s)	10
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	2 cut(s)	442, 586
AfiI	CCNNNNNNNGG	3 cut(s)	94, 341, 575
AgsI	TTSAA	1 cut(s)	122
AjnI	CCWGG	1 cut(s)	340
AleI	CACNNNNGTG	1 cut(s)	402
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	2 cut(s)	264, 614
ApoI	RAATTY	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	659
BalI	TGGCCA	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	331
BbvCI	CCTCAGC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	276, 601
BciT130I	CCWGG	1 cut(s)	342
BclI	TGATCA	2 cut(s)	462, 499
BfaI	CTAG	1 cut(s)	444
BfoI	RGCGCY	1 cut(s)	45
BisI	GCNGC	3 cut(s)	265, 454, 615
BlsI	GCNGC	3 cut(s)	266, 455, 616
BmcAI	AGTACT	1 cut(s)	442
Bme1390I	CCNGG	1 cut(s)	342
BmiI	GGNNCC	2 cut(s)	333, 349
BmrFI	CCNGG	1 cut(s)	342
BmrI	ACTGGG	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	196
Bpu10I	CCTNAGC	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	351, 362
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 341, 575
Bse118I	RCCGGY	1 cut(s)	488
Bse1I	ACTGG	3 cut(s)	202, 281, 406
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	351, 362
BseGI	GGATG	2 cut(s)	197, 241
BseLI	CCNNNNNNNGG	3 cut(s)	94, 341, 575
BseMII	CTCAG	2 cut(s)	65, 627
BseNI	ACTGG	3 cut(s)	202, 281, 406
BseRI	GAGGAG	5 cut(s)	207, 210, 213, 216, 219
BseXI	GCAGC	2 cut(s)	276, 601
BsgI	GTGCAG	1 cut(s)	283
Bsh1236I	CGCG	1 cut(s)	476
Bsh1285I	CGRYCG	1 cut(s)	489
BshFI	GGCC	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	331
BsiEI	CGRYCG	1 cut(s)	489
BsiSI	CCGG	1 cut(s)	489
BslI	CCNNNNNNNGG	3 cut(s)	94, 341, 575
BsnI	GGCC	1 cut(s)	87
Bsp143I	GATC	2 cut(s)	462, 499
Bsp68I	TCGCGA	1 cut(s)	476
BspACI	CCGC	2 cut(s)	447, 453
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	2 cut(s)	66, 628
BspFNI	CGCG	1 cut(s)	476
BspLI	GGNNCC	2 cut(s)	333, 349
BspT107I	GGYRCC	1 cut(s)	331
BsrFI	RCCGGY	1 cut(s)	488
BsrI	ACTGG	3 cut(s)	202, 281, 406
BssAI	RCCGGY	1 cut(s)	488
BssECI	CCNNGG	2 cut(s)	351, 362
BssMI	GATC	2 cut(s)	462, 499
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	2 cut(s)	351, 362
Bst2UI	CCWGG	1 cut(s)	342
BstACI	GRCGYC	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	74, 636
BstEII	GGTNACC	1 cut(s)	647
BstF5I	GGATG	2 cut(s)	197, 241
BstFNI	CGCG	1 cut(s)	476
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	2 cut(s)	465, 502
BstMBI	GATC	2 cut(s)	462, 499
BstMCI	CGRYCG	1 cut(s)	489
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 453, 596
BstNI	CCWGG	1 cut(s)	342
BstPI	GGTNACC	1 cut(s)	647
BstSCI	CCNGG	1 cut(s)	340
BstUI	CGCG	1 cut(s)	476
BstV1I	GCAGC	2 cut(s)	276, 601
BstXI	CCANNNNNNTGG	1 cut(s)	404
BsuRI	GGCC	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	197, 241
BtsI	GCAGTG	2 cut(s)	509, 609
BtsIMutI	CAGTG	3 cut(s)	399, 509, 609
BtuMI	TCGCGA	1 cut(s)	476
CfoI	GCGC	1 cut(s)	44
Cfr10I	RCCGGY	1 cut(s)	488
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	2 cut(s)	441, 585
CviAII	CATG	2 cut(s)	460, 573
CviQI	GTAC	2 cut(s)	441, 585
DdeI	CTNAG	2 cut(s)	74, 636
DpnI	GATC	2 cut(s)	464, 501
DpnII	GATC	2 cut(s)	462, 499
DrdI	GACNNNNNNGTC	1 cut(s)	202
DseDI	GACNNNNNNGTC	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	85
Eco130I	CCWWGG	2 cut(s)	351, 362
Eco91I	GGTNACC	1 cut(s)	647
EcoO65I	GGTNACC	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	2 cut(s)	351, 362
ErhI	CCWWGG	2 cut(s)	351, 362
FaeI	CATG	2 cut(s)	463, 576
FatI	CATG	2 cut(s)	459, 572
FauNDI	CATATG	1 cut(s)	192
FbaI	TGATCA	2 cut(s)	462, 499
Fnu4HI	GCNGC	3 cut(s)	265, 454, 615
FokI	GGATG	2 cut(s)	184, 228
Fsp4HI	GCNGC	3 cut(s)	265, 454, 615
FspBI	CTAG	1 cut(s)	444
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	3 cut(s)	265, 454, 615
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	1 cut(s)	489
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	463, 576
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HinfI	GANTC	1 cut(s)	482
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	2 cut(s)	288, 637
Hpy188III	TCNNGA	4 cut(s)	411, 475, 503, 675
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	1 cut(s)	579
HpyCH4V	TGCA	2 cut(s)	264, 529
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 453, 596
HpyF3I	CTNAG	2 cut(s)	74, 636
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	2 cut(s)	463, 576
HspAI	GCGC	1 cut(s)	42
Ksp22I	TGATCA	2 cut(s)	462, 499
Kzo9I	GATC	2 cut(s)	462, 499
LmnI	GCTCC	1 cut(s)	347
Lsp1109I	GCAGC	2 cut(s)	276, 601
MaeI	CTAG	1 cut(s)	444
MaeIII	GTNAC	1 cut(s)	647
MalI	GATC	2 cut(s)	464, 501
MboI	GATC	2 cut(s)	462, 499
MlsI	TGGCCA	1 cut(s)	87
MluCI	AATT	6 cut(s)	10, 293, 592, 604, 621, 631
MluNI	TGGCCA	1 cut(s)	87
Mox20I	TGGCCA	1 cut(s)	87
MscI	TGGCCA	1 cut(s)	87
MseI	TTAA	3 cut(s)	177, 234, 381
MslI	CAYNNNNRTG	1 cut(s)	402
Msp20I	TGGCCA	1 cut(s)	87
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	342
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	3 cut(s)	55, 453, 596
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	2 cut(s)	462, 499
NlaIII	CATG	2 cut(s)	463, 576
NlaIV	GGNNCC	2 cut(s)	333, 349
NmeAIII	GCCGAG	2 cut(s)	63, 70
NmuCI	GTSAC	1 cut(s)	647
NruI	TCGCGA	1 cut(s)	476
OliI	CACNNNNGTG	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	482
PkrI	GCNGC	3 cut(s)	266, 455, 616
Psp6I	CCWGG	1 cut(s)	340
PspEI	GGTNACC	1 cut(s)	647
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	2 cut(s)	333, 349
RruI	TCGCGA	1 cut(s)	476
RsaI	GTAC	2 cut(s)	442, 586
RsaNI	GTAC	2 cut(s)	441, 585
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	3 cut(s)	177, 234, 381
SatI	GCNGC	3 cut(s)	265, 454, 615
Sau3AI	GATC	2 cut(s)	462, 499
ScaI	AGTACT	1 cut(s)	442
ScrFI	CCNGG	1 cut(s)	342
SetI	ASST	4 cut(s)	172, 333, 424, 658
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	6 cut(s)	10, 293, 592, 604, 621, 631
SsiI	CCGC	2 cut(s)	447, 453
SspMI	CTAG	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	2 cut(s)	351, 362
TaqI	TCGA	2 cut(s)	93, 485
TasI	AATT	6 cut(s)	10, 293, 592, 604, 621, 631
TatI	WGTACW	1 cut(s)	440
TauI	GCSGC	1 cut(s)	456
TfiI	GAWTC	1 cut(s)	482
Tru1I	TTAA	3 cut(s)	177, 234, 381
Tru9I	TTAA	3 cut(s)	177, 234, 381
TscAI	CASTG	3 cut(s)	406, 516, 616
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	2 cut(s)	264, 614
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	3 cut(s)	306, 432, 561
TspGWI	ACGGA	2 cut(s)	367, 447
TspRI	CASTG	3 cut(s)	406, 516, 616
XapI	RAATTY	1 cut(s)	10
XspI	CTAG	1 cut(s)	444
ZrmI	AGTACT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.