Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016616

Physical Location & Seq

Genomic Coordinates Reverse (-)

30641137 .. 30643020

Gene Structure 1884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g35730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGAGGGCGAGGATCAGCAGGTGAAGAAGGGTGGATCGGCACTTGGAGTTGGGCTGGAGAACACAACGAGGTGGAATCCGACGAAGGAGCAGATAACTATCCTGGAAGATCTGTATGAGAAAGGGATGAGGACTCCGAGCGCCGAGTTCATACAGGCGGTAACGGCGAGGCTGAAGACTTACGGTCACATTGAGGGTAAGAATGTGTTTTATTGGTTTCAGAATCACAAGGCGAGGCAGAGACAGAAGGAGAAGCAGGAAGCTAGCTTAGCTTATTTCAACCGCTTTCTTCATACGGCGGCGGTCTCTCAGTATCCATTGTTTCCTCCTCCACCCCAATATCCTTGCTCAAATGTGATATGCAGCCCTTATTATATGCCGCCAGTTCCAAGTGAAGTAGGGTTATGTCCACAATCTCATCCCATGGTGCCTCCACAATCTGTTGGGGTCAAGAGGAGACCAAGAATGGAGAAACTGGATGTGCCAACAAGAACTTGCAGCAACGGTGGTGGAGGGTTTGAGCCAATGCGCCATGGATATGGCAGAGGGGGCCGCTGCAGTGTTGATCTCAATGATGGGACTAACAGATTCATGAGCAACTCAGATGATCCAGAAACACTGCCATTGTTTCCTTTGACACCCACAGGCCTCCTACAGGGCAGAGATGAAAGCCTTCTTTCTAGTTTAGCTGGTAACTGTGCTCAGAACTCGACCGCTCTCGTTAGCTCTTCTGGGATTGTCGAGGGTCATGGTGAGCGGCCAAGTTTCTACGATTTTTTCAGTGGAGGACAAGGCAGATGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008284 GO:0009628 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009889 GO:0009942 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010654 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0045165 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048859 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080167 GO:0090451 GO:0090691 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

269

Amino Acids

29.61

Weight (kDa)

7.6

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	23 - 82	4.2e-13	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59340
fragaria_vesca	FvH4_3g35730
malus_domestica	MD11G1111700.v1.1
prunus_persica	Prupe.6G080100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0063891
rosa_laevigata	RLG00000035688
rosa_multiflora	Rmu_sc0000552.1_g000023
rosa_roxburghii	Rroxscaffold_1G00016880
rosa_rugosa	Rorug05G0361000
rosa_samantha	Rh5AG419500 Rh5BG435400 Rh5CG458500 Rh5DG448500
rosa_wichuraiana	Rw5G039430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	10
Acc36I	ACCTGC	1 cut(s)	10
AccB1I	GGYRCC	1 cut(s)	427
AccBSI	CCGCTC	2 cut(s)	716, 757
AciI	CCGC	8 cut(s)	158, 283, 299, 302, 380, 553, 714, 757
AclWI	GGATC	3 cut(s)	21, 43, 602
AcoI	YGGCCR	1 cut(s)	758
AcuI	CTGAAG	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	655
AgsI	TTSAA	1 cut(s)	280
AhdI	GACNNNNNGTC	1 cut(s)	183
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	5 cut(s)	263, 267, 272, 689, 726
AluI	AGCT	5 cut(s)	263, 267, 272, 689, 726
Alw21I	GWGCWC	1 cut(s)	703
Alw26I	GTCTC	3 cut(s)	235, 310, 451
AlwI	GGATC	3 cut(s)	21, 43, 602
AoxI	GGCC	3 cut(s)	550, 646, 758
ApeKI	GCWGC	3 cut(s)	363, 498, 555
Asp700I	GAANNNNTTC	1 cut(s)	672
AspLEI	GCGC	2 cut(s)	143, 531
AspS9I	GGNCC	1 cut(s)	550
AsuHPI	GGTGA	2 cut(s)	34, 764
AsuNHI	GCTAGC	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	427
BbsI	GAAGAC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	703
BbvI	GCAGC	3 cut(s)	375, 510, 542
BccI	CCATC	1 cut(s)	569
BceAI	ACGGC	2 cut(s)	180, 312
BciT130I	CCWGG	1 cut(s)	104
BciVI	GTATCC	1 cut(s)	324
BcoDI	GTCTC	3 cut(s)	235, 310, 451
BfaI	CTAG	2 cut(s)	264, 681
BfmI	CTRYAG	2 cut(s)	556, 653
BfoI	RGCGCY	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	10
BfuI	GTATCC	1 cut(s)	324
BglII	AGATCT	1 cut(s)	109
BisI	GCNGC	7 cut(s)	300, 364, 380, 499, 553, 556, 758
BlpI	GCTNAGC	1 cut(s)	268
BlsI	GCNGC	7 cut(s)	301, 365, 381, 500, 554, 557, 759
Bme1390I	CCNGG	1 cut(s)	104
BmeRI	GACNNNNNGTC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	550
BmiI	GGNNCC	2 cut(s)	429, 551
BmrFI	CCNGG	1 cut(s)	104
BmtI	GCTAGC	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	182
BpmI	CTGGAG	1 cut(s)	77
Bpu1102I	GCTNAGC	1 cut(s)	268
BsaBI	GATNNNNATC	1 cut(s)	98
BsaI	GGTCTC	2 cut(s)	310, 451
BsaJI	CCNNGG	2 cut(s)	423, 532
Bsc4I	CCNNNNNNNGG	1 cut(s)	655
Bse1I	ACTGG	2 cut(s)	383, 480
Bse8I	GATNNNNATC	1 cut(s)	98
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	2 cut(s)	423, 532
BseGI	GGATG	3 cut(s)	132, 418, 484
BseJI	GATNNNNATC	1 cut(s)	98
BseLI	CCNNNNNNNGG	1 cut(s)	655
BseMII	CTCAG	3 cut(s)	323, 615, 716
BseNI	ACTGG	2 cut(s)	383, 480
BseRI	GAGGAG	2 cut(s)	318, 469
BseXI	GCAGC	3 cut(s)	375, 510, 542
Bsh1285I	CGRYCG	1 cut(s)	714
BshFI	GGCC	3 cut(s)	552, 648, 760
BshNI	GGYRCC	1 cut(s)	427
BsiEI	CGRYCG	1 cut(s)	714
BsiHKAI	GWGCWC	1 cut(s)	703
BslFI	GGGAC	1 cut(s)	592
BslI	CCNNNNNNNGG	1 cut(s)	655
BsmAI	GTCTC	3 cut(s)	235, 310, 451
BsmFI	GGGAC	1 cut(s)	592
BsnI	GGCC	3 cut(s)	552, 648, 760
Bso31I	GGTCTC	2 cut(s)	310, 451
Bsp1286I	GDGCHC	1 cut(s)	703
Bsp143I	GATC	5 cut(s)	13, 35, 109, 565, 607
Bsp1720I	GCTNAGC	1 cut(s)	268
Bsp19I	CCATGG	2 cut(s)	423, 532
BspACI	CCGC	8 cut(s)	158, 283, 299, 302, 380, 553, 714, 757
BspANI	GGCC	3 cut(s)	552, 648, 760
BspCNI	CTCAG	3 cut(s)	322, 614, 715
BspHI	TCATGA	1 cut(s)	591
BspLI	GGNNCC	2 cut(s)	429, 551
BspMAI	CTGCAG	1 cut(s)	560
BspMI	ACCTGC	1 cut(s)	10
BspOI	GCTAGC	1 cut(s)	267
BspPI	GGATC	3 cut(s)	21, 43, 602
BspQI	GCTCTTC	1 cut(s)	733
BspT107I	GGYRCC	1 cut(s)	427
BspTNI	GGTCTC	2 cut(s)	310, 451
BsrBI	CCGCTC	2 cut(s)	716, 757
BsrI	ACTGG	2 cut(s)	383, 480
BssECI	CCNNGG	2 cut(s)	423, 532
BssMI	GATC	5 cut(s)	13, 35, 109, 565, 607
BssT1I	CCWWGG	2 cut(s)	423, 532
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	3 cut(s)	185, 506, 698
Bst6I	CTCTTC	1 cut(s)	733
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	4 cut(s)	268, 309, 601, 702
BstDSI	CCRYGG	2 cut(s)	423, 532
BstENI	CCTNNNNNAGG	1 cut(s)	653
BstF5I	GGATG	3 cut(s)	132, 418, 484
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	2 cut(s)	143, 531
BstKTI	GATC	5 cut(s)	16, 38, 112, 568, 610
BstMAI	GTCTC	3 cut(s)	235, 310, 451
BstMBI	GATC	5 cut(s)	13, 35, 109, 565, 607
BstMCI	CGRYCG	1 cut(s)	714
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 269, 549
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	2 cut(s)	556, 653
BstV1I	GCAGC	3 cut(s)	375, 510, 542
BstV2I	GAAGAC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	109
BstXI	CCANNNNNNTGG	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	324
BsuRI	GGCC	3 cut(s)	552, 648, 760
BtgI	CCRYGG	2 cut(s)	423, 532
BtsCI	GGATG	3 cut(s)	132, 418, 484
BtsI	GCAGTG	2 cut(s)	565, 617
BtsIMutI	CAGTG	3 cut(s)	565, 617, 787
BveI	ACCTGC	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	265
CciI	TCATGA	1 cut(s)	591
CfoI	GCGC	2 cut(s)	143, 531
Cfr13I	GGNCC	1 cut(s)	550
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	4 cut(s)	424, 533, 592, 749
DdeI	CTNAG	4 cut(s)	268, 309, 601, 702
DpnI	GATC	5 cut(s)	15, 37, 111, 567, 609
DpnII	GATC	5 cut(s)	13, 35, 109, 565, 607
DriI	GACNNNNNGTC	1 cut(s)	183
EaeI	YGGCCR	1 cut(s)	758
Eam1104I	CTCTTC	1 cut(s)	733
Eam1105I	GACNNNNNGTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	733
Eco130I	CCWWGG	2 cut(s)	423, 532
Eco147I	AGGCCT	1 cut(s)	648
Eco31I	GGTCTC	2 cut(s)	310, 451
Eco57I	CTGAAG	1 cut(s)	194
EcoNI	CCTNNNNNAGG	1 cut(s)	653
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	2 cut(s)	423, 532
ErhI	CCWWGG	2 cut(s)	423, 532
FaeI	CATG	4 cut(s)	427, 536, 595, 752
FaqI	GGGAC	1 cut(s)	592
FatI	CATG	4 cut(s)	423, 532, 591, 748
Fnu4HI	GCNGC	7 cut(s)	300, 364, 380, 499, 553, 556, 758
FokI	GGATG	3 cut(s)	139, 405, 491
Fsp4HI	GCNGC	7 cut(s)	300, 364, 380, 499, 553, 556, 758
FspBI	CTAG	2 cut(s)	264, 681
GlaI	GCGC	2 cut(s)	142, 530
GluI	GCNGC	7 cut(s)	300, 364, 380, 499, 553, 556, 758
GsuI	CTGGAG	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	3 cut(s)	552, 648, 760
HhaI	GCGC	2 cut(s)	143, 531
Hin1II	CATG	4 cut(s)	427, 536, 595, 752
Hin6I	GCGC	2 cut(s)	141, 529
HinP1I	GCGC	2 cut(s)	141, 529
HinfI	GANTC	4 cut(s)	76, 133, 223, 588
HphI	GGTGA	2 cut(s)	34, 764
Hpy166II	GTNNAC	1 cut(s)	410
Hpy188I	TCNGA	5 cut(s)	81, 138, 222, 604, 705
Hpy188III	TCNNGA	3 cut(s)	451, 592, 611
Hpy8I	GTNNAC	1 cut(s)	410
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	4 cut(s)	22, 79, 241, 683
HpyCH4III	ACNGT	3 cut(s)	185, 506, 698
HpyCH4V	TGCA	3 cut(s)	363, 498, 558
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 269, 549
HpyF3I	CTNAG	4 cut(s)	268, 309, 601, 702
Hsp92II	CATG	4 cut(s)	427, 536, 595, 752
HspAI	GCGC	2 cut(s)	141, 529
Kzo9I	GATC	5 cut(s)	13, 35, 109, 565, 607
LguI	GCTCTTC	1 cut(s)	733
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	3 cut(s)	375, 510, 542
MaeI	CTAG	2 cut(s)	264, 681
MaeIII	GTNAC	3 cut(s)	160, 185, 692
MalI	GATC	5 cut(s)	15, 37, 111, 567, 609
MbiI	CCGCTC	2 cut(s)	716, 757
MboI	GATC	5 cut(s)	13, 35, 109, 565, 607
MboII	GAAGA	5 cut(s)	37, 119, 187, 281, 720
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	703
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	672
MslI	CAYNNNNRTG	1 cut(s)	537
MspA1I	CMGCKG	1 cut(s)	555
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	3 cut(s)	164, 269, 549
NcoI	CCATGG	2 cut(s)	423, 532
NdeII	GATC	5 cut(s)	13, 35, 109, 565, 607
NheI	GCTAGC	1 cut(s)	263
NlaIII	CATG	4 cut(s)	427, 536, 595, 752
NlaIV	GGNNCC	2 cut(s)	429, 551
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	185
PagI	TCATGA	1 cut(s)	591
PaqCI	CACCTGC	1 cut(s)	10
PceI	AGGCCT	1 cut(s)	648
PciSI	GCTCTTC	1 cut(s)	733
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	3 cut(s)	76, 223, 588
PfoI	TCCNGGA	1 cut(s)	102
PkrI	GCNGC	7 cut(s)	301, 365, 381, 500, 554, 557, 759
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	429, 551
PspPI	GGNCC	1 cut(s)	550
PstI	CTGCAG	1 cut(s)	560
PsuI	RGATCY	1 cut(s)	109
RseI	CAYNNNNRTG	1 cut(s)	537
SapI	GCTCTTC	1 cut(s)	733
SatI	GCNGC	7 cut(s)	300, 364, 380, 499, 553, 556, 758
Sau3AI	GATC	5 cut(s)	13, 35, 109, 565, 607
Sau96I	GGNCC	1 cut(s)	550
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	703
SetI	ASST	7 cut(s)	24, 74, 265, 269, 274, 691, 728
SfcI	CTRYAG	2 cut(s)	556, 653
SmiMI	CAYNNNNRTG	1 cut(s)	537
SseBI	AGGCCT	1 cut(s)	648
SsiI	CCGC	8 cut(s)	158, 283, 299, 302, 380, 553, 714, 757
SspMI	CTAG	2 cut(s)	264, 681
StuI	AGGCCT	1 cut(s)	648
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	2 cut(s)	423, 532
TaaI	ACNGT	3 cut(s)	185, 506, 698
TaqI	TCGA	2 cut(s)	710, 741
TauI	GCSGC	4 cut(s)	302, 382, 555, 760
TfiI	GAWTC	3 cut(s)	76, 223, 588
TscAI	CASTG	3 cut(s)	565, 624, 787
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	3 cut(s)	363, 498, 555
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	4 cut(s)	139, 281, 580, 681
TspRI	CASTG	3 cut(s)	565, 624, 787
XagI	CCTNNNNNAGG	1 cut(s)	653
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	2 cut(s)	264, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.