AT5G63100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017088
Physical Location & Seq
Reverse (-)
25314104 .. 25315533
1430 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G63100.1

Sequence Viewer

Length: 990 bp
ATGGCCAGGGAGCTTGTGTCTCTTCAATACCTCCGACCTCCACTTCACATTTCTCGTCAATTTCTAAACCTCTCTTCTCCTCCTTTAACTCTCAATCTCCGGCCAAAACCTCCGCAAAATCCAATCTTTATCCGAACCGACTCTCACCGCAACAAAACTTCCGCCGACGATAACGGAATCCCAGCAGAGGACGTCAAAACCATCGCCAAATTCAAATCCCGTCACAATTACATCAGAGTCATCGAAGTTTCACGAAAAACCAATCACCCACTCGCTGGTTCTCGTCTCCTCCTTCTCGATAATCCCGGTAACATCCATAGCATCTCTTTCCTTCTTAAAACCTTAACCGATAGTTACTTCGACGTTTTCGCTACTCTGCCTCCGATTATACCTCCCGGACCAATTGGTATTCTCGGATTCGGAGCTGGTTCAACAGCTAGATTGATTCTTGAGCTTTATCCTCCTGAGATCGCTGTCCATGGATGGGAACTTGACCCTTCCGTGATTGACGTTGGTAGAGAGTTCTTTGGTCTCTCTAAGCTCGAAAGAGATCATAAAGATAGGATTTTTATCAACATTGGTGATGCTTTGAACGCTAGTGTTAAAACCGGGTTTTCGGGTATTTTAGTGGATTTGTTTAGTAAAGGGAGTGTGATCAAAGAGCTTCAAGATCCTCAAGTGTGGGAGGATTTGAAATCTAGGTTGAGATATAGAGGGAGGATTATGGTGAATGTTGGAGGTAAATGTGTGGAAGCTGAGGATTCAGATAGAGATGGAGCTTTGGTTATGGAGGAAACGTTGAGAGTGATGAGTCAGGTTTTTGGAGATAAGCTATTTGTTCTAACGCTTGGGAATGGGAATGATAGCTCGGTAGCTTTAACGGGTGATTTACCGGATCTTGATGCGTGGAAGAAGAGATTACCGCGTAGTGAATTGAGAAGCTATGTTGATATGTGGATACCTTATAGAGAATTCTGCTTGAGATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

329

Amino Acids

37.0

Weight (kDa)

8.42

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63100
fragaria_vesca FvH4_5g06050
malus_domestica MD06G1167600.v1.1 MD14G1173100.v1.1
rosa_chinensis RchiOBHm_Chr7g0192811
rosa_laevigata RLG00000004327
rosa_multiflora Rmu_sc0002040.1_g000029
rosa_roxburghii Rroxscaffold_3G00262670
rosa_rugosa Rorug07G0004600
rosa_samantha Rh7AG130000 Rh7CG134400 Rh7DG132200
rosa_wichuraiana Rw7G011130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 195
AccB7I CCANNNNNTGG 1 cut(s) 275
AccII CGCG 1 cut(s) 925
AciI CCGC 4 cut(s) 113, 148, 162, 923
AclI AACGTT 1 cut(s) 797
AclWI GGATC 2 cut(s) 665, 903
AcoI YGGCCR 2 cut(s) 3, 101
AcsI RAATTY 2 cut(s) 209, 971
AcyI GRCGYC 1 cut(s) 192
AfiI CCNNNNNNNGG 3 cut(s) 187, 275, 484
AgsI TTSAA 6 cut(s) 26, 214, 432, 592, 668, 694
AjnI CCWGG 1 cut(s) 5
Alw26I GTCTC 3 cut(s) 24, 290, 536
AlwI GGATC 2 cut(s) 665, 903
AoxI GGCC 2 cut(s) 3, 101
ApoI RAATTY 2 cut(s) 209, 971
AspS9I GGNCC 1 cut(s) 398
AsuC2I CCSGG 3 cut(s) 306, 396, 610
AsuHPI GGTGA 5 cut(s) 137, 257, 593, 739, 896
AvaII GGWCC 1 cut(s) 398
BalI TGGCCA 1 cut(s) 5
BbvCI CCTCAGC 1 cut(s) 756
BccI CCATC 3 cut(s) 209, 477, 767
BciT130I CCWGG 1 cut(s) 7
BciVI GTATCC 1 cut(s) 951
BclI TGATCA 1 cut(s) 654
BcnI CCSGG 3 cut(s) 306, 396, 610
BcoDI GTCTC 3 cut(s) 24, 290, 536
BfaI CTAG 3 cut(s) 438, 597, 699
BfuI GTATCC 1 cut(s) 951
Bme1390I CCNGG 4 cut(s) 7, 306, 396, 610
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 398
BmrFI CCNGG 4 cut(s) 7, 306, 396, 610
BmsI GCATC 3 cut(s) 330, 574, 892
Bpu10I CCTNAGC 1 cut(s) 756
BpuEI CTTGAG 2 cut(s) 470, 660
BpuMI CCSGG 3 cut(s) 306, 396, 610
BsaBI GATNNNNATC 1 cut(s) 569
BsaHI GRCGYC 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 536
BsaJI CCNNGG 2 cut(s) 6, 478
BsaWI WCCGGW 1 cut(s) 892
BsaXI ACNNNNNCTCC 7 cut(s) 32, 364, 394, 768, 782, 798, 812
Bsc4I CCNNNNNNNGG 3 cut(s) 187, 275, 484
Bse8I GATNNNNATC 1 cut(s) 569
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 2 cut(s) 6, 478
BseGI GGATG 2 cut(s) 312, 488
BseJI GATNNNNATC 1 cut(s) 569
BseLI CCNNNNNNNGG 3 cut(s) 187, 275, 484
BseMII CTCAG 2 cut(s) 456, 747
BseRI GAGGAG 2 cut(s) 69, 278
BseYI CCCAGC 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 925
BshFI GGCC 2 cut(s) 5, 103
BsiSI CCGG 5 cut(s) 100, 306, 396, 609, 893
BslI CCNNNNNNNGG 3 cut(s) 187, 275, 484
BsmAI GTCTC 3 cut(s) 24, 290, 536
BsmBI CGTCTC 1 cut(s) 290
BsnI GGCC 2 cut(s) 5, 103
Bso31I GGTCTC 1 cut(s) 536
Bsp143I GATC 5 cut(s) 468, 550, 654, 670, 895
Bsp19I CCATGG 1 cut(s) 478
BspACI CCGC 4 cut(s) 113, 148, 162, 923
BspANI GGCC 2 cut(s) 5, 103
BspCNI CTCAG 2 cut(s) 457, 748
BspFNI CGCG 1 cut(s) 925
BspPI GGATC 2 cut(s) 665, 903
BspTNI GGTCTC 1 cut(s) 536
BssECI CCNNGG 2 cut(s) 6, 478
BssMI GATC 5 cut(s) 468, 550, 654, 670, 895
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 478
Bst2UI CCWGG 1 cut(s) 7
Bst6I CTCTTC 3 cut(s) 27, 79, 908
BstACI GRCGYC 1 cut(s) 192
BstDEI CTNAG 3 cut(s) 465, 537, 756
BstDSI CCRYGG 1 cut(s) 478
BstF5I GGATG 2 cut(s) 312, 488
BstFNI CGCG 1 cut(s) 925
BstKTI GATC 5 cut(s) 471, 553, 657, 673, 898
BstMAI GTCTC 3 cut(s) 24, 290, 536
BstMBI GATC 5 cut(s) 468, 550, 654, 670, 895
BstMWI GCNNNNNNNGC 1 cut(s) 593
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 4 cut(s) 5, 304, 394, 608
BstUI CGCG 1 cut(s) 925
BstX2I RGATCY 2 cut(s) 670, 895
BstYI RGATCY 2 cut(s) 670, 895
BsuI GTATCC 1 cut(s) 951
BsuRI GGCC 2 cut(s) 5, 103
BtgI CCRYGG 1 cut(s) 478
BtgZI GCGATG 1 cut(s) 187
BtsCI GGATG 2 cut(s) 312, 488
Cfr13I GGNCC 1 cut(s) 398
CviAII CATG 1 cut(s) 479
DdeI CTNAG 3 cut(s) 465, 537, 756
DpnI GATC 5 cut(s) 470, 552, 656, 672, 897
DpnII GATC 5 cut(s) 468, 550, 654, 670, 895
EaeI YGGCCR 2 cut(s) 3, 101
Eam1104I CTCTTC 3 cut(s) 27, 79, 908
EarI CTCTTC 3 cut(s) 27, 79, 908
EciI GGCGGA 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 478
Eco31I GGTCTC 1 cut(s) 536
Eco47I GGWCC 1 cut(s) 398
EcoRI GAATTC 1 cut(s) 971
EcoRII CCWGG 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 478
ErhI CCWWGG 1 cut(s) 478
Esp3I CGTCTC 1 cut(s) 290
FaeI CATG 1 cut(s) 482
FatI CATG 1 cut(s) 478
FbaI TGATCA 1 cut(s) 654
FokI GGATG 2 cut(s) 299, 495
FspBI CTAG 3 cut(s) 438, 597, 699
GsaI CCCAGC 1 cut(s) 185
HaeIII GGCC 2 cut(s) 5, 103
HapII CCGG 5 cut(s) 100, 306, 396, 609, 893
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 1 cut(s) 482
HinfI GANTC 7 cut(s) 140, 177, 237, 417, 445, 761, 811
HpaII CCGG 5 cut(s) 100, 306, 396, 609, 893
HphI GGTGA 5 cut(s) 137, 257, 593, 739, 896
Hpy188I TCNGA 7 cut(s) 35, 134, 236, 384, 416, 422, 766
Hpy188III TCNNGA 6 cut(s) 252, 296, 449, 464, 668, 899
Hpy99I CGWCG 2 cut(s) 170, 365
HpyAV CCTTC 3 cut(s) 302, 341, 507
HpyCH4IV ACGT 4 cut(s) 192, 363, 510, 797
HpyF10VI GCNNNNNNNGC 1 cut(s) 593
HpyF3I CTNAG 3 cut(s) 465, 537, 756
HpySE526I ACGT 4 cut(s) 192, 363, 510, 797
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 1 cut(s) 482
Ksp22I TGATCA 1 cut(s) 654
Kzo9I GATC 5 cut(s) 468, 550, 654, 670, 895
LmnI GCTCC 3 cut(s) 10, 422, 776
LweI GCATC 3 cut(s) 330, 574, 892
MaeI CTAG 3 cut(s) 438, 597, 699
MaeII ACGT 4 cut(s) 192, 363, 510, 797
MaeIII GTNAC 3 cut(s) 221, 308, 353
MalI GATC 5 cut(s) 470, 552, 656, 672, 897
MboI GATC 5 cut(s) 468, 550, 654, 670, 895
MboII GAAGA 4 cut(s) 14, 66, 922, 925
MfeI CAATTG 1 cut(s) 402
MflI RGATCY 2 cut(s) 670, 895
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 59, 209, 226, 402, 932, 971
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 134, 246, 820
MmeI TCCRAC 2 cut(s) 58, 715
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 86, 336, 344, 603, 878
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 5 cut(s) 100, 306, 396, 609, 893
MspR9I CCNGG 4 cut(s) 7, 306, 396, 610
MunI CAATTG 1 cut(s) 402
MvaI CCWGG 1 cut(s) 7
MvnI CGCG 1 cut(s) 925
MwoI GCNNNNNNNGC 1 cut(s) 593
NciI CCSGG 3 cut(s) 306, 396, 610
NcoI CCATGG 1 cut(s) 478
NdeII GATC 5 cut(s) 468, 550, 654, 670, 895
NlaIII CATG 1 cut(s) 482
NmuCI GTSAC 1 cut(s) 221
PfeI GAWTC 4 cut(s) 177, 417, 445, 761
PflMI CCANNNNNTGG 1 cut(s) 275
PfoI TCCNGGA 1 cut(s) 394
PleI GAGTC 3 cut(s) 134, 245, 819
PpsI GAGTC 3 cut(s) 134, 245, 819
Psp1406I AACGTT 1 cut(s) 797
Psp6I CCWGG 1 cut(s) 5
PspFI CCCAGC 1 cut(s) 181
PspGI CCWGG 1 cut(s) 5
PspPI GGNCC 1 cut(s) 398
PsuI RGATCY 2 cut(s) 670, 895
SaqAI TTAA 5 cut(s) 86, 336, 344, 603, 878
Sau3AI GATC 5 cut(s) 468, 550, 654, 670, 895
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 3 cut(s) 134, 246, 820
ScrFI CCNGG 4 cut(s) 7, 306, 396, 610
SfaNI GCATC 3 cut(s) 330, 574, 892
SinI GGWCC 1 cut(s) 398
SmlI CTYRAG 3 cut(s) 449, 675, 979
SmoI CTYRAG 3 cut(s) 449, 675, 979
Sse9I AATT 6 cut(s) 59, 209, 226, 402, 932, 971
SsiI CCGC 4 cut(s) 113, 148, 162, 923
SspMI CTAG 3 cut(s) 438, 597, 699
StyD4I CCNGG 4 cut(s) 5, 304, 394, 608
StyI CCWWGG 1 cut(s) 478
TaiI ACGT 4 cut(s) 195, 366, 513, 800
TaqI TCGA 4 cut(s) 243, 297, 360, 543
TasI AATT 6 cut(s) 59, 209, 226, 402, 932, 971
TfiI GAWTC 4 cut(s) 177, 417, 445, 761
Tru1I TTAA 5 cut(s) 86, 336, 344, 603, 878
Tru9I TTAA 5 cut(s) 86, 336, 344, 603, 878
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
TspGWI ACGGA 2 cut(s) 189, 490
Van91I CCANNNNNTGG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 398
XapI RAATTY 2 cut(s) 209, 971
XspI CTAG 3 cut(s) 438, 597, 699
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.