MD06G1167600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0017088
Physical Location & Seq
Forward (+)
30767964 .. 30770225
2262 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1167600.v1.1.491

Sequence Viewer

Length: 1014 bp
ATGTCACTCCTGCAAAACACCCACCAAATTCGACCGTTAATTCCCTATCCAGTTCAAAAATTCCCCAACTCTTTCCACCCCAGATCTCCAAACCTCCATTTCTCTCCCAAAACATCTCCAAAACCAATCCACTTCCACCCATCGACGCCCAAATCCCAATCCGCCCACCACCCCGCCCCGGAAACCAAAACCCAAGACGACGGCATCCCCGCCGAGGATGTCAAAATCCTAGCCAAATTCAAGTCCATGCACAACTACATTCGGGTCCTCGAGGTCTCGAAAAGGGCCGACCACCCTTTTGCCGGCTCAAGACTCCTCCTTCTCGACAACCCCGGAAACATCCACAGCATCTCTTTCATTTTCAAGTCCCTCACCAACACCTACTTCGATGTCTTCGCCACCTTGCCGCCGATTATTCCTCCCGGACCCATCGGCATTCTTGGGTTCGGGGCGGGGTCTGCGGCAAGGTCGATTCTTGATTTGTACCCAGAAGCTGTGGTTCATGGGTGGGAGCTTGACCCATCTGTGATTGCTGTGGGCAGAGAGTACTTTGGACTCTCAAAGCTTGAGAGGCAATACACGGATAGGCTTGTAATTCATGTTGGAGATGCTTTCAAGGCCAGCACGAGAGACGGGTTTTCGGGGATTTTGGTGGATTTGTTTAGTAAAGGCAGTTTGGTTCCTGAGTTGCAGGATTCGAATACTTGGAAGATGCTCACAAAGTGTTTGAGAAAAGGCGGCAGAATAATGGTCAATGTAGGAGGTAGCTGTGTGGAGTCTGAGGACTCACTGAGAGATGGGAAAATTGTTATGGAAGAAACTTTGAAGGCTATGCATCAGGTTTTTGGCGACAAGCTTTTTGTGTTGAGCCTTGGGAATCGACAGGAAGATAGCTCCCTTGCTCTTACGGGTGATATGCCGCCTGATCTTGGAGCTTGGAAGAAGATGCTGCACCGTTCCTTGGAGGGTTATGTCGATATGTGGTGGGAGGATTTTTCACATGTTGATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

338

Amino Acids

37.55

Weight (kDa)

6.95

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63100
fragaria_vesca FvH4_5g06050
malus_domestica MD06G1167600.v1.1 MD14G1173100.v1.1
rosa_chinensis RchiOBHm_Chr7g0192811
rosa_laevigata RLG00000004327
rosa_multiflora Rmu_sc0002040.1_g000029
rosa_roxburghii Rroxscaffold_3G00262670
rosa_rugosa Rorug07G0004600
rosa_samantha Rh7AG130000 Rh7CG134400 Rh7DG132200
rosa_wichuraiana Rw7G011130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 269
AciI CCGC 8 cut(s) 162, 174, 210, 407, 452, 461, 738, 920
AcsI RAATTY 3 cut(s) 27, 59, 236
AcyI GRCGYC 1 cut(s) 146
AdeI CACNNNGTG 1 cut(s) 723
AfaI GTAC 2 cut(s) 485, 548
AfiI CCNNNNNNNGG 5 cut(s) 178, 214, 302, 929, 961
AflIII ACRYGT 1 cut(s) 1000
AgsI TTSAA 5 cut(s) 56, 241, 364, 616, 826
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AluBI AGCT 7 cut(s) 494, 514, 565, 768, 856, 894, 935
AluI AGCT 7 cut(s) 494, 514, 565, 768, 856, 894, 935
Alw26I GTCTC 2 cut(s) 280, 624
AlwNI CAGNNNCTG 1 cut(s) 494
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 2 cut(s) 285, 618
ApeKI GCWGC 1 cut(s) 949
ApoI RAATTY 3 cut(s) 27, 59, 236
ArsI GACNNNNNNTTYG 4 cut(s) 281, 313, 842, 874
AspS9I GGNCC 3 cut(s) 265, 285, 425
AsuC2I CCSGG 3 cut(s) 179, 333, 423
AsuHPI GGTGA 2 cut(s) 364, 923
AsuII TTCGAA 1 cut(s) 698
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 2 cut(s) 265, 425
BauI CACGAG 1 cut(s) 625
BbsI GAAGAC 1 cut(s) 385
BbvI GCAGC 1 cut(s) 936
BccI CCATC 4 cut(s) 148, 437, 529, 791
BceAI ACGGC 1 cut(s) 217
BcnI CCSGG 3 cut(s) 179, 333, 423
BcoDI GTCTC 2 cut(s) 280, 624
BfaI CTAG 1 cut(s) 230
BglII AGATCT 1 cut(s) 83
BisI GCNGC 5 cut(s) 407, 462, 739, 920, 950
BlsI GCNGC 5 cut(s) 408, 463, 740, 921, 951
BmcAI AGTACT 1 cut(s) 548
Bme1390I CCNGG 3 cut(s) 179, 333, 423
Bme18I GGWCC 2 cut(s) 265, 425
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 3 cut(s) 265, 285, 425
BmiI GGNNCC 3 cut(s) 266, 427, 681
BmrFI CCNGG 3 cut(s) 179, 333, 423
BmsI GCATC 6 cut(s) 213, 357, 598, 702, 844, 936
BpiI GAAGAC 1 cut(s) 385
Bpu14I TTCGAA 1 cut(s) 698
BpuEI CTTGAG 2 cut(s) 292, 587
BpuMI CCSGG 3 cut(s) 179, 333, 423
BsaHI GRCGYC 1 cut(s) 146
BsaI GGTCTC 1 cut(s) 280
BsaJI CCNNGG 5 cut(s) 177, 213, 331, 871, 960
Bsc4I CCNNNNNNNGG 5 cut(s) 178, 214, 302, 929, 961
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 1 cut(s) 50
BseDI CCNNGG 5 cut(s) 177, 213, 331, 871, 960
BseGI GGATG 3 cut(s) 204, 223, 339
BseLI CCNNNNNNNGG 5 cut(s) 178, 214, 302, 929, 961
BseMII CTCAG 3 cut(s) 675, 771, 782
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 1 cut(s) 305
BseXI GCAGC 1 cut(s) 936
BsgI GTGCAG 1 cut(s) 935
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 2 cut(s) 287, 620
BsiEI CGRYCG 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 4 cut(s) 179, 303, 333, 423
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 5 cut(s) 178, 214, 302, 929, 961
BsmAI GTCTC 2 cut(s) 280, 624
BsmBI CGTCTC 1 cut(s) 624
BsmFI GGGAC 1 cut(s) 352
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 2 cut(s) 287, 620
Bso31I GGTCTC 1 cut(s) 280
BsoBI CYCGRG 1 cut(s) 269
Bsp119I TTCGAA 1 cut(s) 698
Bsp143I GATC 2 cut(s) 83, 925
BspACI CCGC 8 cut(s) 162, 174, 210, 407, 452, 461, 738, 920
BspANI GGCC 2 cut(s) 287, 620
BspCNI CTCAG 3 cut(s) 676, 772, 783
BspLI GGNNCC 3 cut(s) 266, 427, 681
BspT104I TTCGAA 1 cut(s) 698
BspTNI GGTCTC 1 cut(s) 280
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 5 cut(s) 177, 213, 331, 871, 960
BssMI GATC 2 cut(s) 83, 925
BssNI GRCGYC 1 cut(s) 146
BssSI CACGAG 1 cut(s) 625
BssT1I CCWWGG 2 cut(s) 871, 960
Bst2BI CACGAG 1 cut(s) 625
Bst4CI ACNGT 2 cut(s) 36, 956
BstACI GRCGYC 1 cut(s) 146
BstBI TTCGAA 1 cut(s) 698
BstC8I GCNNGC 2 cut(s) 304, 622
BstDEI CTNAG 3 cut(s) 684, 780, 791
BstF5I GGATG 3 cut(s) 204, 223, 339
BstKTI GATC 2 cut(s) 86, 928
BstMAI GTCTC 2 cut(s) 280, 624
BstMBI GATC 2 cut(s) 83, 925
BstMCI CGRYCG 1 cut(s) 35
BstMWI GCNNNNNNNGC 3 cut(s) 458, 571, 617
BstNSI RCATGY 1 cut(s) 1004
BstSCI CCNGG 3 cut(s) 177, 331, 421
BstV1I GCAGC 1 cut(s) 936
BstV2I GAAGAC 1 cut(s) 385
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BsuRI GGCC 2 cut(s) 287, 620
BtsCI GGATG 3 cut(s) 204, 223, 339
BtsIMutI CAGTG 1 cut(s) 788
Cac8I GCNNGC 2 cut(s) 304, 622
CaiI CAGNNNCTG 1 cut(s) 494
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 3 cut(s) 265, 285, 425
CseI GACGC 1 cut(s) 154
Csp6I GTAC 2 cut(s) 484, 547
CviAII CATG 4 cut(s) 247, 503, 599, 1001
CviQI GTAC 2 cut(s) 484, 547
DdeI CTNAG 3 cut(s) 684, 780, 791
DpnI GATC 2 cut(s) 85, 927
DpnII GATC 2 cut(s) 83, 925
DraIII CACNNNGTG 1 cut(s) 723
EciI GGCGGA 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 871, 960
Eco31I GGTCTC 1 cut(s) 280
Eco47I GGWCC 2 cut(s) 265, 425
Eco88I CYCGRG 1 cut(s) 269
EcoO109I RGGNCCY 1 cut(s) 265
EcoT14I CCWWGG 2 cut(s) 871, 960
EcoT22I ATGCAT 1 cut(s) 837
ErhI CCWWGG 2 cut(s) 871, 960
Esp3I CGTCTC 1 cut(s) 624
FaeI CATG 4 cut(s) 250, 506, 602, 1004
FaiI YATR 9 cut(s) 248, 504, 600, 812, 833, 917, 972, 980, 1002
FaqI GGGAC 1 cut(s) 352
FatI CATG 4 cut(s) 246, 502, 598, 1000
FauI CCCGC 3 cut(s) 181, 217, 445
Fnu4HI GCNGC 5 cut(s) 407, 462, 739, 920, 950
FokI GGATG 3 cut(s) 191, 230, 326
Fsp4HI GCNGC 5 cut(s) 407, 462, 739, 920, 950
FspBI CTAG 1 cut(s) 230
GluI GCNGC 5 cut(s) 407, 462, 739, 920, 950
HaeIII GGCC 2 cut(s) 287, 620
HapII CCGG 4 cut(s) 179, 303, 333, 423
HgaI GACGC 1 cut(s) 154
Hin1I GRCGYC 1 cut(s) 146
Hin1II CATG 4 cut(s) 250, 506, 602, 1004
HindIII AAGCTT 2 cut(s) 563, 854
HinfI GANTC 7 cut(s) 312, 472, 555, 695, 776, 785, 877
HpaII CCGG 4 cut(s) 179, 303, 333, 423
HphI GGTGA 2 cut(s) 364, 923
Hpy188I TCNGA 1 cut(s) 781
Hpy188III TCNNGA 5 cut(s) 277, 309, 323, 476, 683
Hpy99I CGWCG 2 cut(s) 148, 203
HpyAV CCTTC 2 cut(s) 329, 820
HpyCH4III ACNGT 2 cut(s) 36, 956
HpyCH4V TGCA 5 cut(s) 13, 250, 691, 835, 952
HpyF10VI GCNNNNNNNGC 3 cut(s) 458, 571, 617
HpyF3I CTNAG 3 cut(s) 684, 780, 791
Hsp92I GRCGYC 1 cut(s) 146
Hsp92II CATG 4 cut(s) 250, 506, 602, 1004
KroI GCCGGC 1 cut(s) 302
KroNI GCCGGC 1 cut(s) 304
Kzo9I GATC 2 cut(s) 83, 925
LmnI GCTCC 3 cut(s) 511, 899, 932
Lsp1109I GCAGC 1 cut(s) 936
LweI GCATC 6 cut(s) 213, 357, 598, 702, 844, 936
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 3
MalI GATC 2 cut(s) 85, 927
MboI GATC 2 cut(s) 83, 925
MboII GAAGA 6 cut(s) 385, 721, 827, 899, 952, 955
MflI RGATCY 1 cut(s) 83
MluCI AATT 6 cut(s) 27, 39, 59, 236, 594, 804
MlyI GAGTC 4 cut(s) 306, 549, 779, 785
MmeI TCCRAC 1 cut(s) 583
Mph1103I ATGCAT 1 cut(s) 837
MroNI GCCGGC 1 cut(s) 302
MseI TTAA 1 cut(s) 38
MspI CCGG 4 cut(s) 179, 303, 333, 423
MspR9I CCNGG 3 cut(s) 179, 333, 423
Mva1269I GAATGC 1 cut(s) 435
MwoI GCNNNNNNNGC 3 cut(s) 458, 571, 617
NaeI GCCGGC 1 cut(s) 304
NciI CCSGG 3 cut(s) 179, 333, 423
NdeII GATC 2 cut(s) 83, 925
NgoMIV GCCGGC 1 cut(s) 302
NlaIII CATG 4 cut(s) 250, 506, 602, 1004
NlaIV GGNNCC 3 cut(s) 266, 427, 681
NmeAIII GCCGAG 1 cut(s) 238
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 837
NspI RCATGY 1 cut(s) 1004
NspV TTCGAA 1 cut(s) 698
PaeR7I CTCGAG 1 cut(s) 269
PciI ACATGT 1 cut(s) 1000
PctI GAATGC 1 cut(s) 435
PdiI GCCGGC 1 cut(s) 304
PfeI GAWTC 3 cut(s) 472, 695, 877
PfoI TCCNGGA 1 cut(s) 421
PkrI GCNGC 5 cut(s) 408, 463, 740, 921, 951
PleI GAGTC 4 cut(s) 306, 549, 779, 784
PpsI GAGTC 4 cut(s) 306, 549, 779, 784
PpuMI RGGWCCY 1 cut(s) 265
PscI ACATGT 1 cut(s) 1000
Psp5II RGGWCCY 1 cut(s) 265
PspN4I GGNNCC 3 cut(s) 266, 427, 681
PspPI GGNCC 3 cut(s) 265, 285, 425
PspPPI RGGWCCY 1 cut(s) 265
PspXI VCTCGAGB 1 cut(s) 269
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 1 cut(s) 83
RsaI GTAC 2 cut(s) 485, 548
RsaNI GTAC 2 cut(s) 484, 547
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 5 cut(s) 407, 462, 739, 920, 950
Sau3AI GATC 2 cut(s) 83, 925
Sau96I GGNCC 3 cut(s) 265, 285, 425
ScaI AGTACT 1 cut(s) 548
SchI GAGTC 4 cut(s) 306, 549, 779, 785
ScrFI CCNGG 3 cut(s) 179, 333, 423
SfaNI GCATC 6 cut(s) 213, 357, 598, 702, 844, 936
Sfr274I CTCGAG 1 cut(s) 269
SfuI TTCGAA 1 cut(s) 698
SinI GGWCC 2 cut(s) 265, 425
SlaI CTCGAG 1 cut(s) 269
SmlI CTYRAG 3 cut(s) 269, 307, 566
SmoI CTYRAG 3 cut(s) 269, 307, 566
Sse9I AATT 6 cut(s) 27, 39, 59, 236, 594, 804
SsiI CCGC 8 cut(s) 162, 174, 210, 407, 452, 461, 738, 920
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 3 cut(s) 177, 331, 421
StyI CCWWGG 2 cut(s) 871, 960
TaaI ACNGT 2 cut(s) 36, 956
TasI AATT 6 cut(s) 27, 39, 59, 236, 594, 804
TatI WGTACW 1 cut(s) 546
TauI GCSGC 4 cut(s) 409, 464, 741, 922
TfiI GAWTC 3 cut(s) 472, 695, 877
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 1 cut(s) 795
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 949
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 3 cut(s) 346, 491, 587
TspGWI ACGGA 1 cut(s) 596
TspRI CASTG 1 cut(s) 795
VpaK11BI GGWCC 2 cut(s) 265, 425
XapI RAATTY 3 cut(s) 27, 59, 236
XceI RCATGY 1 cut(s) 1004
XhoI CTCGAG 1 cut(s) 269
XspI CTAG 1 cut(s) 230
ZrmI AGTACT 1 cut(s) 548
Zsp2I ATGCAT 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.