Rorug07G0004600
MYB Family

Belongs to the histone deacetylase family. HD Type 1 subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002152
Physical Location & Seq
Reverse (-)
385559 .. 392072
6514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0004600.1

Sequence Viewer

Length: 3141 bp
ATGGTGAGGAAGAAGCGAGGTGGTCAACTCCCTGGTAGCGGTGGAGCTGAAACCTATGAATCTCAGCAAGTAGCTTACCAGCAGCACAACCAAGAGGCAAGAGGAGGAGCTGGAAGACCACCACAAGGAGCCAACAGAGGCTATGGCGGCGGCCGTGGGAATGGAAATGGAAATGGAAATGGAAATGGTGGGATGCCATATCAGTACCAGCAGTATGGTGGTCCCCCGCCCTCTGAGAATGGAGGCAGGGGGAGGGGACAGGGAAGAGGAAGTCGTGGGGGAGGATCTTCTTCCGGTGGCTATGGCCCCCCCAAAACATCAATTCCTGACCTGCACCAAGCGACCCCTGCTGCTCCATATGTTGCTGGGGTCAACCCTCAGCCTCAACCTGCAACACCATCTCCAGAACTGGTGGAGTCTTTTCAGCAGGTTTCTATTGGGCAACAAGTTGCTCCTCTTCCTGTGCAGGCACAGGCAATCCAACCTATTCCCACCTCAAGTAAGTCGGTTAGGTTCCCTCTTCGCCCTGGCAGAGGCACCGTCGGCGCTAAATGTATTGTCAAGGCCAATCACTTCTTTGCTGAGTTACCTGACAAAGATCTGCACCAGTATGATGTTACTATTACACCCGACATTGCATCAAGGAGGTTGAATCGGGCTGTGATCAAGCAGCTGGTGGATTTGTACAGGCAATCCCAGCTTGGAAATAGGCTCCCTGCCTATGACGGACGGAAGAGTCTGTACACTGCTGGGCCGCTTCCTTTCTCATCCAAGGAGTTCAAGATCGTGCTTGTTGATGACGATGATGGATCAGGATCAGGCGGGCAAAGGAAGGAGAAGGAGAGAGAATTTAAAGTGGTGGTCAAGTTTGCTGCACGTGCTGACCTACACCATCTAGAACTCTTTTTGATGGGGAGGCAAGCTGAGGCTCCTCAGGAAGCCCTTCAGGTTCTCGACATTGTTCTGCGTGAATTGCCTACAGCTAGTTACTTTCCTGTGGCACGTTCATTTTATTCCCCTGATCTGGGGAGAAGGCAGTCCCTAGGTGAGGGTTTGGAAAGTTGGCGTGGATTCTATCAGAGCATTCGTCCAACGCAGATGGGGCTGTCTCTAAATATTGATATGTCATCTACTGCTTTCATCGAGCCACTGCCAATCATTGAATTTGTCAATCAGCTACTCAATCGAGACATTTCATTTAGACAATTGTCAGATGCTGATCGCGTGAAGATCAAGAAAGCTTTACGAGGAATCAAAGTTGAAGTTACACACCGTGGACATATGCGCCGAAAATACCGTATTACTGGATTAACATCGCAACCAACAAGAGAGCTGACTTTTCCACTTGATGAGAGAGGAACCATGAAATCTGTTGTTGACTACTTTCATGAAACTTATGGTTTCATTATAAAGCATACTCAGTTGCCGTGTCTACAAGTGGGAAATCAGCAGAGATCAAATTACTTGCCCATGGAGGTCTGTAAAATAGTTGAAGGTCAGAGGTACTCCAGGAGGTTGAATGAGAGACAGATTACTGCTTTGCTGAAGGTGACCTGCCAGCGTCCTCATGAAAGGGAACGTGATATTATCCAGACAGTTCGTCAAAACGCTTACCATGAAGATCCTTATGCTCAGGAGTTTGGCATTAAAATCAGTGAGAATCTCACTTTGCTTGAAGCTCGTATTCTTCCTGCACCAAGACTTAAATATCATGATACAGGTAGAGAAAAGGATTGCCAGCCTCGAGTTGGACAGTGGAATATGATGAATAAGAAAATGGTCAATGGTGGCACAGTCAACAATTGGATGTGCATAAACTTTTCCGGGGGCGTGCAAGATGCTGTTGCCCGTCGGTTCTGTAGTGAACTTGTTCAAATGTGCAACGTTTCTGGCATGGCATTTAATCCAGAACCAGTACTTCCACCTGTCACCGCTCATCCCGGTCATGTCGAGAGGGCCCTAAAATCTCGCTTTCATGAAGCACTGATCAAACTCCAGCCCCGCGGCCAGGAGCTTGAGCTACTAATTGCTATTTTGCCAGATAATAATGGCTCTCTTTATGGTGATTTGAAGCGAATTTGTGAGACGGATCTCGGCCTTGTTTCCCAATGCTGTTTAACAAAGCATGTATTTAAAAACAATAAGCAACAGTATTTGGCAAATGTAACGTTGAAGATCAACGTGAAGGTCGGGGGAAGGAATACAGTGCTTGTTGATGCTCTGTCCAGGCGAATTCCTTTAGTCAGTGATCGACCTACCATCATTTTTGGTGCTGATGTCACCCATCCTCATCCTGGAGAGGATTCAAGTCCGTCAATTGCAGCGGTTGTGGCTTCTCAAGATTGGCCTGAAGTTACAAAGTATGCTGGTTTGGTTTCTGCTCAAACCCATCGACAGGAACTCATCCAAGATTTGTTCAAAACATGGCAGGATCCAGCAAAGGGGACAATGTCTGGTGGCATGATCAAGGAACTGCTCATATCTTTCCGTAGATCAACTGGGCAAAAACCACAACGGATCATATTCTACAGGGATGGTGTCAGTGAAGGACAGTTTTATCAAGTTTTGCTGTATGAACTTGATGCCATTCGTAAAGCATGTGCCTCCTTGGAGCCCGATTATCAGCCTCCGGTGACTTTTGTGGTGGTTCAAAAGCGCCATCATACTAGGTTGTTTGCTAACAACCATAATGACTCAAGATCAGTTGACAGAAGTGGGAATATATTACCTGGTACAGTTGTAGACTCCAAAATCTGTCATCCAACTGAATTTGACTTCTACCTGTGTAGCCATGCTGGAATTCAGGGCACGAGTCGTCCAGCCCATTACCATGTGCTATGGGATGAGAACAACTTTTCAGCTGATGGATTGCAGACCCTTACAAATAACCTTTGTTATACATATGCGAGGTGTACACGTTCTGTTTCTGTTGTCCCCCCTGCATACTATGCACATCTTGCTGCATTTCGAGCCCGTTTCTACTTGGAACCACAGACGTCAGAAGGCGGGTCAGTGACAAGTGGTGCTACCACAAATGGACGCGGTGGTGGACGTAGGGCGCCGCTTGCTGCAAATTCTGCTGCTGTGAAGCCTTTACCTGCTCTCAAGGATAATGTCAAGAAGGTTATGTTCTACTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004407 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006476 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009553 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009845 GO:0009892 GO:0009941 GO:0009987 GO:0010033 GO:0010154 GO:0010228 GO:0010431 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016043 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016575 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019222 GO:0019538 GO:0021700 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032504 GO:0033558 GO:0033993 GO:0035601 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048316 GO:0048519 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090351 GO:0097305 GO:0098732 GO:0140096 GO:1901564 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04110 ko04213 ko04330 ko04919 ko05016 ko05034 ko05165 ko05169 ko05200 ko05202 ko05203 ko05220 map04110 map04213 map04330 map04919 map05016 map05034 map05165 map05169 map05200 map05202 map05203 map05220
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

1046

Amino Acids

116.02

Weight (kDa)

9.45

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gly-rich_Ago1 PF12764 64 - 164 7.4e-06 Glycine-rich region of argonaut
ArgoN PF16486 184 - 322 5.8e-37 N-terminal domain of argonaute
ArgoL1 PF08699 333 - 382 7.9e-21 Argonaute linker 1 domain
PAZ PF02170 388 - 514 1.5e-30 PAZ domain
ArgoL2 PF16488 524 - 570 2.2e-15 Argonaute linker 2 domain
ArgoMid PF16487 581 - 654 3.2e-09 Mid domain of argonaute
Piwi PF02171 675 - 994 1.7e-114 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1409
AasI GACNNNNNNGTC 1 cut(s) 735
AatII GACGTC 1 cut(s) 2999
Acc36I ACCTGC 5 cut(s) 339, 397, 418, 1562, 3106
AccB1I GGYRCC 2 cut(s) 536, 3058
AccBSI CCGCTC 1 cut(s) 1934
AccI GTMKAC 2 cut(s) 1432, 2742
AccII CGCG 3 cut(s) 1224, 2004, 3042
AclI AACGTT 2 cut(s) 1884, 2168
AclWI GGATC 8 cut(s) 292, 817, 823, 1616, 2097, 2426, 2439, 2525
AcoI YGGCCR 2 cut(s) 151, 2005
AcsI RAATTY 7 cut(s) 848, 1163, 2076, 2232, 2768, 2799, 3073
AcuI CTGAAG 3 cut(s) 929, 1565, 2370
AcvI CACGTG 1 cut(s) 878
AcyI GRCGYC 2 cut(s) 2996, 3059
AdeI CACNNNGTG 1 cut(s) 1274
AfaI GTAC 7 cut(s) 206, 686, 743, 1505, 1917, 2734, 2914
AflIII ACRYGT 1 cut(s) 2915
AhdI GACNNNNNGTC 1 cut(s) 1599
AjnI CCWGG 7 cut(s) 31, 526, 1508, 2007, 2225, 2293, 2728
Alw26I GTCTC 4 cut(s) 1113, 1182, 1519, 2078
AlwI GGATC 8 cut(s) 292, 817, 823, 1616, 2097, 2426, 2439, 2525
AlwNI CAGNNNCTG 1 cut(s) 1217
Ama87I CYCGRG 1 cut(s) 1743
AoxI GGCC 8 cut(s) 151, 304, 564, 752, 1956, 2005, 2095, 2345
ApaI GGGCCC 1 cut(s) 1960
ApeKI GCWGC 8 cut(s) 82, 350, 670, 872, 2321, 2960, 3068, 3080
ApoI RAATTY 7 cut(s) 848, 1163, 2076, 2232, 2768, 2799, 3073
Asp700I GAANNNNTTC 2 cut(s) 942, 1869
AspA2I CCTAGG 1 cut(s) 1042
AspLEI GCGC 4 cut(s) 548, 1287, 2658, 3061
AspS9I GGNCC 5 cut(s) 221, 305, 752, 1956, 1957
AsuC2I CCSGG 2 cut(s) 1825, 1941
AsuHPI GGTGA 7 cut(s) 16, 1058, 1561, 1921, 2075, 2272, 2644
AvaI CYCGRG 1 cut(s) 1743
AvaII GGWCC 1 cut(s) 221
AvrII CCTAGG 1 cut(s) 1042
AxyI CCTNAGG 1 cut(s) 933
BaeGI GKGCMC 2 cut(s) 1960, 2810
BaeI ACNNNNGTAYC 2 cut(s) 2724, 2757
BamHI GGATCC 1 cut(s) 2431
BanI GGYRCC 2 cut(s) 536, 3058
BanII GRGCYC 3 cut(s) 1960, 2616, 2974
BarI GAAGNNNNNNTAC 2 cut(s) 725, 757
BauI CACGAG 1 cut(s) 2809
BbrPI CACGTG 1 cut(s) 878
BbsI GAAGAC 1 cut(s) 121
BbvCI CCTCAGC 2 cut(s) 378, 924
BbvI GCAGC 8 cut(s) 94, 337, 682, 859, 2333, 2947, 3055, 3067
BceAI ACGGC 2 cut(s) 138, 1411
BciT130I CCWGG 7 cut(s) 33, 528, 1510, 2009, 2227, 2295, 2730
BclI TGATCA 3 cut(s) 663, 1986, 2463
BcnI CCSGG 2 cut(s) 1825, 1941
BcoDI GTCTC 4 cut(s) 1113, 1182, 1519, 2078
BfaI CTAG 4 cut(s) 896, 984, 1043, 2667
BfmI CTRYAG 3 cut(s) 978, 1858, 2527
BfoI RGCGCY 3 cut(s) 549, 2659, 3062
BfuAI ACCTGC 5 cut(s) 339, 397, 418, 1562, 3106
BglII AGATCT 1 cut(s) 598
BlnI CCTAGG 1 cut(s) 1042
BmcAI AGTACT 1 cut(s) 1917
Bme1390I CCNGG 9 cut(s) 33, 528, 1510, 1825, 1941, 2009, 2227, 2295, 2730
Bme18I GGWCC 1 cut(s) 221
BmeRI GACNNNNNGTC 1 cut(s) 1599
BmeT110I CYCGRG 1 cut(s) 1743
BmgT120I GGNCC 5 cut(s) 221, 305, 752, 1956, 1957
BmrFI CCNGG 9 cut(s) 33, 528, 1510, 1825, 1941, 2009, 2227, 2295, 2730
BmrI ACTGGG 1 cut(s) 2508
BmsI GCATC 6 cut(s) 183, 647, 1204, 1828, 2206, 2572
BmuI ACTGGG 1 cut(s) 2508
BoxI GACNNNNGTC 1 cut(s) 1207
BpiI GAAGAC 1 cut(s) 121
BpmI CTGGAG 4 cut(s) 387, 1492, 1979, 2316
Bpu10I CCTNAGC 3 cut(s) 378, 924, 1632
BpuEI CTTGAG 5 cut(s) 481, 2036, 2322, 2680, 3089
BpuMI CCSGG 2 cut(s) 1825, 1941
BsaAI YACGTR 1 cut(s) 878
BsaBI GATNNNNATC 3 cut(s) 814, 1218, 1312
BsaHI GRCGYC 2 cut(s) 2996, 3059
BsaWI WCCGGW 2 cut(s) 293, 2629
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
Bse1I ACTGG 5 cut(s) 414, 607, 1309, 1913, 2503
Bse21I CCTNAGG 1 cut(s) 933
Bse3DI GCAATG 1 cut(s) 633
Bse8I GATNNNNATC 3 cut(s) 814, 1218, 1312
BseBI CCWGG 7 cut(s) 33, 528, 1510, 2009, 2227, 2295, 2730
BseJI GATNNNNATC 3 cut(s) 814, 1218, 1312
BseMI GCAATG 1 cut(s) 633
BseMII CTCAG 8 cut(s) 77, 225, 392, 573, 915, 947, 1433, 1646
BseNI ACTGG 5 cut(s) 414, 607, 1309, 1913, 2503
BseRI GAGGAG 4 cut(s) 117, 120, 444, 921
BseSI GKGCMC 2 cut(s) 1960, 2810
BseX3I CGGCCG 1 cut(s) 151
BseXI GCAGC 8 cut(s) 94, 337, 682, 859, 2333, 2947, 3055, 3067
BseYI CCCAGC 3 cut(s) 365, 696, 749
BsgI GTGCAG 5 cut(s) 317, 485, 587, 858, 1677
Bsh1236I CGCG 3 cut(s) 1224, 2004, 3042
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 8 cut(s) 153, 306, 566, 754, 1958, 2007, 2097, 2347
BshNI GGYRCC 2 cut(s) 536, 3058
BsiEI CGRYCG 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 1743
BsiSI CCGG 4 cut(s) 294, 1824, 1941, 2630
BslFI GGGAC 5 cut(s) 207, 270, 1024, 2458, 2918
BsmAI GTCTC 4 cut(s) 1113, 1182, 1519, 2078
BsmBI CGTCTC 1 cut(s) 2078
BsmFI GGGAC 5 cut(s) 207, 270, 1024, 2458, 2918
BsmI GAATGC 1 cut(s) 1083
BsnI GGCC 8 cut(s) 153, 306, 566, 754, 1958, 2007, 2097, 2347
BsoBI CYCGRG 1 cut(s) 1743
Bsp120I GGGCCC 1 cut(s) 1956
Bsp1286I GDGCHC 4 cut(s) 1960, 2616, 2810, 2974
Bsp1407I TGTACA 3 cut(s) 684, 741, 2912
Bsp19I CCATGG 1 cut(s) 1470
BspANI GGCC 8 cut(s) 153, 306, 566, 754, 1958, 2007, 2097, 2347
BspCNI CTCAG 8 cut(s) 76, 226, 391, 574, 916, 946, 1432, 1645
BspFNI CGCG 3 cut(s) 1224, 2004, 3042
BspHI TCATGA 4 cut(s) 1387, 1567, 1711, 1975
BspMI ACCTGC 5 cut(s) 339, 397, 418, 1562, 3106
BspPI GGATC 8 cut(s) 292, 817, 823, 1616, 2097, 2426, 2439, 2525
BspT107I GGYRCC 2 cut(s) 536, 3058
BsrBI CCGCTC 1 cut(s) 1934
BsrDI GCAATG 1 cut(s) 633
BsrGI TGTACA 3 cut(s) 684, 741, 2912
BsrI ACTGG 5 cut(s) 414, 607, 1309, 1913, 2503
BssNI GRCGYC 2 cut(s) 2996, 3059
BssSI CACGAG 1 cut(s) 2809
BssT1I CCWWGG 4 cut(s) 771, 1042, 1470, 2607
Bst2BI CACGAG 1 cut(s) 2809
Bst2UI CCWGG 7 cut(s) 33, 528, 1510, 2009, 2227, 2295, 2730
Bst6I CTCTTC 4 cut(s) 259, 462, 525, 728
BstACI GRCGYC 2 cut(s) 2996, 3059
BstAPI GCANNNNNTGC 3 cut(s) 2948, 2957, 3077
BstAUI TGTACA 3 cut(s) 684, 741, 2912
BstBAI YACGTR 1 cut(s) 878
BstC8I GCNNGC 7 cut(s) 468, 824, 921, 1559, 1739, 1832, 3066
BstDEI CTNAG 8 cut(s) 63, 234, 378, 582, 924, 933, 1419, 1632
BstDSI CCRYGG 4 cut(s) 154, 1273, 1470, 2002
BstEII GGTNACC 1 cut(s) 1549
BstENI CCTNNNNNAGG 2 cut(s) 531, 1046
BstFNI CGCG 3 cut(s) 1224, 2004, 3042
BstH2I RGCGCY 3 cut(s) 549, 2659, 3062
BstHHI GCGC 4 cut(s) 548, 1287, 2658, 3061
BstMAI GTCTC 4 cut(s) 1113, 1182, 1519, 2078
BstMCI CGRYCG 1 cut(s) 154
BstNI CCWGG 7 cut(s) 33, 528, 1510, 2009, 2227, 2295, 2730
BstNSI RCATGY 2 cut(s) 2129, 2601
BstPAI GACNNNNGTC 1 cut(s) 1207
BstPI GGTNACC 1 cut(s) 1549
BstSCI CCNGG 9 cut(s) 31, 526, 1508, 1823, 1939, 2007, 2225, 2293, 2728
BstSFI CTRYAG 3 cut(s) 978, 1858, 2527
BstSLI GKGCMC 2 cut(s) 1960, 2810
BstUI CGCG 3 cut(s) 1224, 2004, 3042
BstV1I GCAGC 8 cut(s) 94, 337, 682, 859, 2333, 2947, 3055, 3067
BstV2I GAAGAC 1 cut(s) 121
BstX2I RGATCY 5 cut(s) 284, 598, 1621, 2089, 2431
BstXI CCANNNNNNTGG 1 cut(s) 215
BstYI RGATCY 5 cut(s) 284, 598, 1621, 2089, 2431
BstZI CGGCCG 1 cut(s) 151
Bsu36I CCTNAGG 1 cut(s) 933
BsuRI GGCC 8 cut(s) 153, 306, 566, 754, 1958, 2007, 2097, 2347
BtgI CCRYGG 4 cut(s) 154, 1273, 1470, 2002
BtgZI GCGATG 1 cut(s) 1299
BtsI GCAGTG 2 cut(s) 744, 1148
BtsIMutI CAGTG 9 cut(s) 744, 1148, 1660, 1760, 1982, 2211, 2251, 2548, 3018
BveI ACCTGC 5 cut(s) 339, 397, 418, 1562, 3106
Cac8I GCNNGC 7 cut(s) 468, 824, 921, 1559, 1739, 1832, 3066
CaiI CAGNNNCTG 1 cut(s) 1217
CciI TCATGA 4 cut(s) 1387, 1567, 1711, 1975
CfoI GCGC 4 cut(s) 548, 1287, 2658, 3061
Cfr13I GGNCC 5 cut(s) 221, 305, 752, 1956, 1957
Cfr42I CCGCGG 1 cut(s) 2005
CseI GACGC 2 cut(s) 1550, 3048
CsiI ACCWGGT 1 cut(s) 2728
Csp6I GTAC 7 cut(s) 205, 685, 742, 1504, 1916, 2733, 2913
CviQI GTAC 7 cut(s) 205, 685, 742, 1504, 1916, 2733, 2913
DdeI CTNAG 8 cut(s) 63, 234, 378, 582, 924, 933, 1419, 1632
DinI GGCGCC 1 cut(s) 3060
DraI TTTAAA 2 cut(s) 853, 2134
DraIII CACNNNGTG 1 cut(s) 1274
DrdI GACNNNNNNGTC 1 cut(s) 735
DriI GACNNNNNGTC 1 cut(s) 1599
DseDI GACNNNNNNGTC 1 cut(s) 735
EaeI YGGCCR 2 cut(s) 151, 2005
EagI CGGCCG 1 cut(s) 151
Eam1104I CTCTTC 4 cut(s) 259, 462, 525, 728
Eam1105I GACNNNNNGTC 1 cut(s) 1599
EarI CTCTTC 4 cut(s) 259, 462, 525, 728
EclXI CGGCCG 1 cut(s) 151
Eco130I CCWWGG 4 cut(s) 771, 1042, 1470, 2607
Eco24I GRGCYC 3 cut(s) 1960, 2616, 2974
Eco47I GGWCC 1 cut(s) 221
Eco52I CGGCCG 1 cut(s) 151
Eco57I CTGAAG 3 cut(s) 929, 1565, 2370
Eco72I CACGTG 1 cut(s) 878
Eco81I CCTNAGG 1 cut(s) 933
Eco88I CYCGRG 1 cut(s) 1743
Eco91I GGTNACC 1 cut(s) 1549
EcoNI CCTNNNNNAGG 2 cut(s) 531, 1046
EcoO109I RGGNCCY 2 cut(s) 1956, 1957
EcoO65I GGTNACC 1 cut(s) 1549
EcoRI GAATTC 2 cut(s) 2232, 2799
EcoRII CCWGG 7 cut(s) 31, 526, 1508, 2007, 2225, 2293, 2728
EcoT14I CCWWGG 4 cut(s) 771, 1042, 1470, 2607
EcoT38I GRGCYC 3 cut(s) 1960, 2616, 2974
EgeI GGCGCC 1 cut(s) 3060
EheI GGCGCC 1 cut(s) 3060
ErhI CCWWGG 4 cut(s) 771, 1042, 1470, 2607
Esp3I CGTCTC 1 cut(s) 2078
FaqI GGGAC 5 cut(s) 207, 270, 1024, 2458, 2918
FauI CCCGC 4 cut(s) 234, 815, 2009, 2999
FauNDI CATATG 3 cut(s) 358, 1281, 2902
FbaI TGATCA 3 cut(s) 663, 1986, 2463
FblI GTMKAC 2 cut(s) 1432, 2742
FriOI GRGCYC 3 cut(s) 1960, 2616, 2974
FspBI CTAG 4 cut(s) 896, 984, 1043, 2667
GlaI GCGC 4 cut(s) 547, 1286, 2657, 3060
GsaI CCCAGC 3 cut(s) 369, 700, 753
GsuI CTGGAG 4 cut(s) 387, 1492, 1979, 2316
HaeII RGCGCY 3 cut(s) 549, 2659, 3062
HaeIII GGCC 8 cut(s) 153, 306, 566, 754, 1958, 2007, 2097, 2347
HapII CCGG 4 cut(s) 294, 1824, 1941, 2630
HgaI GACGC 2 cut(s) 1550, 3048
HhaI GCGC 4 cut(s) 548, 1287, 2658, 3061
Hin1I GRCGYC 2 cut(s) 2996, 3059
Hin6I GCGC 4 cut(s) 546, 1285, 2656, 3059
HinP1I GCGC 4 cut(s) 546, 1285, 2656, 3059
HincII GTYRAC 5 cut(s) 26, 373, 1378, 1798, 2707
HindII GTYRAC 5 cut(s) 26, 373, 1378, 1798, 2707
HindIII AAGCTT 1 cut(s) 1239
HpaII CCGG 4 cut(s) 294, 1824, 1941, 2630
HphI GGTGA 7 cut(s) 16, 1058, 1561, 1921, 2075, 2272, 2644
Hpy188I TCNGA 5 cut(s) 235, 1080, 1213, 1500, 3001
Hpy99I CGWCG 2 cut(s) 545, 1854
HpyCH4IV ACGT 9 cut(s) 877, 1003, 1579, 1884, 2168, 2181, 2917, 2996, 3052
HpyF3I CTNAG 8 cut(s) 63, 234, 378, 582, 924, 933, 1419, 1632
HpySE526I ACGT 9 cut(s) 877, 1003, 1579, 1884, 2168, 2181, 2917, 2996, 3052
Hsp92I GRCGYC 2 cut(s) 2996, 3059
HspAI GCGC 4 cut(s) 546, 1285, 2656, 3059
KasI GGCGCC 1 cut(s) 3058
Ksp22I TGATCA 3 cut(s) 663, 1986, 2463
KspI CCGCGG 1 cut(s) 2005
LmnI GCTCC 9 cut(s) 44, 107, 128, 358, 457, 717, 934, 2011, 2611
Lsp1109I GCAGC 8 cut(s) 94, 337, 682, 859, 2333, 2947, 3055, 3067
LweI GCATC 6 cut(s) 183, 647, 1204, 1828, 2206, 2572
MabI ACCWGGT 1 cut(s) 2728
MaeI CTAG 4 cut(s) 896, 984, 1043, 2667
MaeII ACGT 9 cut(s) 877, 1003, 1579, 1884, 2168, 2181, 2917, 2996, 3052
MbiI CCGCTC 1 cut(s) 1934
MfeI CAATTG 3 cut(s) 1205, 1801, 2316
MflI RGATCY 5 cut(s) 284, 598, 1621, 2089, 2431
MhlI GDGCHC 4 cut(s) 1960, 2616, 2810, 2974
Mly113I GGCGCC 1 cut(s) 3059
MlyI GAGTC 5 cut(s) 425, 745, 2687, 2738, 2821
MmeI TCCRAC 4 cut(s) 505, 1115, 1729, 2786
MroXI GAANNNNTTC 2 cut(s) 942, 1869
MseI TTAA 7 cut(s) 852, 1310, 1647, 1704, 1902, 2117, 2133
MslI CAYNNNNRTG 2 cut(s) 609, 2829
MspA1I CMGCKG 4 cut(s) 673, 2004, 2324, 2861
MspI CCGG 4 cut(s) 294, 1824, 1941, 2630
MspR9I CCNGG 9 cut(s) 33, 528, 1510, 1825, 1941, 2009, 2227, 2295, 2730
MunI CAATTG 3 cut(s) 1205, 1801, 2316
Mva1269I GAATGC 1 cut(s) 1083
MvaI CCWGG 7 cut(s) 33, 528, 1510, 2009, 2227, 2295, 2730
MvnI CGCG 3 cut(s) 1224, 2004, 3042
NarI GGCGCC 1 cut(s) 3059
NciI CCSGG 2 cut(s) 1825, 1941
NcoI CCATGG 1 cut(s) 1470
NdeI CATATG 3 cut(s) 358, 1281, 2902
NmeAIII GCCGAG 1 cut(s) 2073
NmuCI GTSAC 5 cut(s) 1549, 1927, 2278, 2632, 3013
NspI RCATGY 2 cut(s) 2129, 2601
PaeR7I CTCGAG 1 cut(s) 1743
PagI TCATGA 4 cut(s) 1387, 1567, 1711, 1975
PctI GAATGC 1 cut(s) 1083
PdmI GAANNNNTTC 2 cut(s) 942, 1869
PfeI GAWTC 6 cut(s) 59, 652, 1071, 1251, 1660, 2303
PflFI GACNNNGTC 1 cut(s) 2449
PfoI TCCNGGA 2 cut(s) 1508, 2293
PleI GAGTC 5 cut(s) 424, 744, 2687, 2738, 2820
PluTI GGCGCC 1 cut(s) 3062
PmaCI CACGTG 1 cut(s) 878
PmlI CACGTG 1 cut(s) 878
PpsI GAGTC 5 cut(s) 424, 744, 2687, 2738, 2820
Ppu21I YACGTR 1 cut(s) 878
PshAI GACNNNNGTC 1 cut(s) 1207
PsiI TTATAA 1 cut(s) 1409
Psp1406I AACGTT 2 cut(s) 1884, 2168
Psp6I CCWGG 7 cut(s) 31, 526, 1508, 2007, 2225, 2293, 2728
PspCI CACGTG 1 cut(s) 878
PspEI GGTNACC 1 cut(s) 1549
PspFI CCCAGC 3 cut(s) 365, 696, 749
PspGI CCWGG 7 cut(s) 31, 526, 1508, 2007, 2225, 2293, 2728
PspOMI GGGCCC 1 cut(s) 1956
PspPI GGNCC 5 cut(s) 221, 305, 752, 1956, 1957
PspXI VCTCGAGB 1 cut(s) 1743
PstNI CAGNNNCTG 1 cut(s) 1217
PsuI RGATCY 5 cut(s) 284, 598, 1621, 2089, 2431
PsyI GACNNNGTC 1 cut(s) 2449
PvuII CAGCTG 2 cut(s) 673, 2861
RsaI GTAC 7 cut(s) 206, 686, 743, 1505, 1917, 2734, 2914
RsaNI GTAC 7 cut(s) 205, 685, 742, 1504, 1916, 2733, 2913
RseI CAYNNNNRTG 2 cut(s) 609, 2829
SacII CCGCGG 1 cut(s) 2005
SaqAI TTAA 7 cut(s) 852, 1310, 1647, 1704, 1902, 2117, 2133
Sau96I GGNCC 5 cut(s) 221, 305, 752, 1956, 1957
ScaI AGTACT 1 cut(s) 1917
SchI GAGTC 5 cut(s) 425, 745, 2687, 2738, 2821
ScrFI CCNGG 9 cut(s) 33, 528, 1510, 1825, 1941, 2009, 2227, 2295, 2730
SduI GDGCHC 4 cut(s) 1960, 2616, 2810, 2974
SexAI ACCWGGT 1 cut(s) 2728
SfaNI GCATC 6 cut(s) 183, 647, 1204, 1828, 2206, 2572
SfcI CTRYAG 3 cut(s) 978, 1858, 2527
SfoI GGCGCC 1 cut(s) 3060
Sfr274I CTCGAG 1 cut(s) 1743
Sfr303I CCGCGG 1 cut(s) 2005
SgrBI CCGCGG 1 cut(s) 2005
SinI GGWCC 1 cut(s) 221
SlaI CTCGAG 1 cut(s) 1743
SmiMI CAYNNNNRTG 2 cut(s) 609, 2829
SmlI CTYRAG 6 cut(s) 496, 1743, 2015, 2337, 2695, 3104
SmoI CTYRAG 6 cut(s) 496, 1743, 2015, 2337, 2695, 3104
SspDI GGCGCC 1 cut(s) 3058
SspI AATATT 1 cut(s) 1117
SspMI CTAG 4 cut(s) 896, 984, 1043, 2667
StyD4I CCNGG 9 cut(s) 31, 526, 1508, 1823, 1939, 2007, 2225, 2293, 2728
StyI CCWWGG 4 cut(s) 771, 1042, 1470, 2607
TaiI ACGT 9 cut(s) 880, 1006, 1582, 1887, 2171, 2184, 2920, 2999, 3055
TaqI TCGA 8 cut(s) 954, 1143, 1186, 1744, 1950, 2251, 2392, 2968
TatI WGTACW 4 cut(s) 684, 741, 1915, 2912
TauI GCSGC 5 cut(s) 150, 153, 757, 2007, 3064
TfiI GAWTC 6 cut(s) 59, 652, 1071, 1251, 1660, 2303
Tru1I TTAA 7 cut(s) 852, 1310, 1647, 1704, 1902, 2117, 2133
Tru9I TTAA 7 cut(s) 852, 1310, 1647, 1704, 1902, 2117, 2133
TscAI CASTG 9 cut(s) 751, 1155, 1660, 1760, 1989, 2211, 2251, 2548, 3018
TseFI GTSAC 5 cut(s) 1549, 1927, 2278, 2632, 3013
TseI GCWGC 8 cut(s) 82, 350, 670, 872, 2321, 2960, 3068, 3080
Tsp45I GTSAC 5 cut(s) 1549, 1927, 2278, 2632, 3013
TspGWI ACGGA 6 cut(s) 741, 745, 2102, 2301, 2477, 2530
TspRI CASTG 9 cut(s) 751, 1155, 1660, 1760, 1989, 2211, 2251, 2548, 3018
Tth111I GACNNNGTC 1 cut(s) 2449
VpaK11BI GGWCC 1 cut(s) 221
XagI CCTNNNNNAGG 2 cut(s) 531, 1046
XapI RAATTY 7 cut(s) 848, 1163, 2076, 2232, 2768, 2799, 3073
XbaI TCTAGA 1 cut(s) 895
XceI RCATGY 2 cut(s) 2129, 2601
XcmI CCANNNNNNNNNTGG 3 cut(s) 215, 1745, 2291
XhoI CTCGAG 1 cut(s) 1743
XmaJI CCTAGG 1 cut(s) 1042
XmiI GTMKAC 2 cut(s) 1432, 2742
XmnI GAANNNNTTC 2 cut(s) 942, 1869
XspI CTAG 4 cut(s) 896, 984, 1043, 2667
ZraI GACGTC 1 cut(s) 2997
ZrmI AGTACT 1 cut(s) 1917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.