Rroxscaffold_6G00399920

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
21967239 .. 21967714
476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00399920.1

Sequence Viewer

Length: 315 bp
ATGATGAAAGGTTCTCCGGCGAAGTTAGCTTTAGCTGTAATAGCAATATACCTTCTTGTGGGTGCTTTTCCTGCAACTTCTGCATTAGGTCCTCACGGTGATGAGAAGAGTTCATGGCATGTTGACTGTATACATGGCTTGACAAGGATACTTGGAAGAAAAGAAGGTAACTTTGGATGTCAAAATGTCATTGTTAGCAAGAAAATAGTGCCCACTCGGAGCCTAAAAGTAACGAGCAAATCCCCGCCTCCACCACCCACTAAGAATACGGCAACATCACTGGGTGCTACCGTATCTCCTCCAGTTGCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

10.76

Weight (kDa)

10.02

Isoelectric Point (pI)

35.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 130
AciI CCGC 1 cut(s) 245
AdeI CACNNNGTG 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 58
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AluBI AGCT 2 cut(s) 29, 35
AluI AGCT 2 cut(s) 29, 35
AlwNI CAGNNNCTG 1 cut(s) 308
ApeKI GCWGC 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 110
AvaII GGWCC 1 cut(s) 89
BaeGI GKGCMC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 295
BceAI ACGGC 1 cut(s) 285
BciVI GTATCC 1 cut(s) 141
BfuI GTATCC 1 cut(s) 141
BisI GCNGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 310
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 221
BmrI ACTGGG 1 cut(s) 290
BmuI ACTGGG 1 cut(s) 290
BpmI CTGGAG 1 cut(s) 285
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse1I ACTGG 2 cut(s) 285, 302
BseGI GGATG 1 cut(s) 182
BseLI CCNNNNNNNGG 1 cut(s) 58
BseNI ACTGG 2 cut(s) 285, 302
BseRI GAGGAG 1 cut(s) 288
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 1 cut(s) 295
BsiSI CCGG 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 213
BspACI CCGC 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 221
BsrI ACTGG 2 cut(s) 285, 302
BssNAI GTATAC 1 cut(s) 131
Bst1107I GTATAC 1 cut(s) 131
Bst4CI ACNGT 3 cut(s) 98, 128, 292
Bst6I CTCTTC 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 261
BstF5I GGATG 1 cut(s) 182
BstMWI GCNNNNNNNGC 4 cut(s) 26, 41, 71, 80
BstNSI RCATGY 1 cut(s) 122
BstSLI GKGCMC 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 295
BstZ17I GTATAC 1 cut(s) 131
BsuI GTATCC 1 cut(s) 141
BtsCI GGATG 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 278
CaiI CAGNNNCTG 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 89
CviAII CATG 4 cut(s) 114, 119, 134, 312
CviJI RGCY 4 cut(s) 29, 35, 138, 222
CviKI_1 RGCY 4 cut(s) 29, 35, 138, 222
DdeI CTNAG 1 cut(s) 261
DraIII CACNNNGTG 1 cut(s) 284
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 89
FaeI CATG 4 cut(s) 117, 122, 137, 315
FaiI YATR 6 cut(s) 49, 115, 120, 131, 135, 313
FatI CATG 4 cut(s) 113, 118, 133, 311
FauI CCCGC 1 cut(s) 252
FblI GTMKAC 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 309
FokI GGATG 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 309
GluI GCNGC 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 285
HapII CCGG 1 cut(s) 17
Hin1II CATG 4 cut(s) 117, 122, 137, 315
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HpaII CCGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 2 cut(s) 124, 131
Hpy188I TCNGA 1 cut(s) 219
Hpy8I GTNNAC 2 cut(s) 124, 131
HpyAV CCTTC 2 cut(s) 62, 158
HpyCH4III ACNGT 3 cut(s) 98, 128, 292
HpyCH4V TGCA 3 cut(s) 74, 83, 311
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 41, 71, 80
HpyF3I CTNAG 1 cut(s) 261
Hsp92II CATG 4 cut(s) 117, 122, 137, 315
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 3 cut(s) 30, 84, 266
Lsp1109I GCAGC 1 cut(s) 295
MaeIII GTNAC 2 cut(s) 167, 229
MboII GAAGA 2 cut(s) 118, 168
MhlI GDGCHC 1 cut(s) 213
MnlI CCTC 3 cut(s) 102, 258, 309
MslI CAYNNNNRTG 1 cut(s) 99
MspI CCGG 1 cut(s) 17
MwoI GCNNNNNNNGC 4 cut(s) 26, 41, 71, 80
NlaIII CATG 4 cut(s) 117, 122, 137, 315
NlaIV GGNNCC 1 cut(s) 221
NspI RCATGY 1 cut(s) 122
PkrI GCNGC 1 cut(s) 310
PpuMI RGGWCCY 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 89
PspPPI RGGWCCY 1 cut(s) 89
PstNI CAGNNNCTG 1 cut(s) 308
RseI CAYNNNNRTG 1 cut(s) 99
SatI GCNGC 1 cut(s) 309
Sau96I GGNCC 1 cut(s) 89
SduI GDGCHC 1 cut(s) 213
SetI ASST 6 cut(s) 13, 31, 37, 54, 91, 169
SinI GGWCC 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 99
SsiI CCGC 1 cut(s) 245
TaaI ACNGT 3 cut(s) 98, 128, 292
TscAI CASTG 1 cut(s) 285
TseI GCWGC 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 20, 102
TspRI CASTG 1 cut(s) 285
VpaK11BI GGWCC 1 cut(s) 89
XceI RCATGY 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.