FvH4_5g06042

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002152
Physical Location & Seq
Reverse (-)
3540872 .. 3541322
451 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06042.t1

Sequence Viewer

Length: 282 bp
ATGGTTGCAATTTTTCTTGTTGTGGGTATTTTACCCGCAACTTCTGCATTATCTCCTCATGGAGGTAAGAAGAGTTTATGGAGTATTGACCATAGAGATGGCTTGAGGAAGATAACTGGAAGGAGAGAAGGTAACATTGGATATCAAGGTGACACTGTTAGCACAAAAACAAAGCCCACCCGCAGCCTAAGAACAACCCTTTCCCCACCACCTGCACCCTTGAAAAGTCAACCAGGATCACAGCGTGATGCTGCGCATGCACCTCTTTCATCTGTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

9.83

Weight (kDa)

11.0

Isoelectric Point (pI)

56.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 220
Acc16I TGCGCA 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 220
AciI CCGC 2 cut(s) 36, 181
AclWI GGATC 1 cut(s) 244
AdeI CACNNNGTG 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 62
AgsI TTSAA 1 cut(s) 223
AjnI CCWGG 1 cut(s) 232
AjuI GAANNNNNNNTTGG 2 cut(s) 120, 152
AlwI GGATC 1 cut(s) 244
ApeKI GCWGC 2 cut(s) 183, 251
AspLEI GCGC 1 cut(s) 256
AsuHPI GGTGA 1 cut(s) 161
BbvI GCAGC 2 cut(s) 195, 238
BccI CCATC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 234
BfuAI ACCTGC 1 cut(s) 220
BisI GCNGC 2 cut(s) 184, 252
BlsI GCNGC 2 cut(s) 185, 253
Bme1390I CCNGG 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 238
BpuEI CTTGAG 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 121
BseBI CCWGG 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 2 cut(s) 195, 238
BsgI GTGCAG 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 62
Bsp143I GATC 1 cut(s) 236
BspACI CCGC 2 cut(s) 36, 181
BspHI TCATGA 1 cut(s) 278
BspMI ACCTGC 1 cut(s) 220
BspPI GGATC 1 cut(s) 244
BsrI ACTGG 1 cut(s) 121
BssMI GATC 1 cut(s) 236
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 65
BstAPI GCANNNNNTGC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 1 cut(s) 188
BstENI CCTNNNNNAGG 1 cut(s) 60
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 1 cut(s) 239
BstMBI GATC 1 cut(s) 236
BstMWI GCNNNNNNNGC 2 cut(s) 44, 257
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 232
BstV1I GCAGC 2 cut(s) 195, 238
BstXI CCANNNNNNTGG 1 cut(s) 98
BtsIMutI CAGTG 1 cut(s) 153
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 258
CciI TCATGA 1 cut(s) 278
CfoI GCGC 1 cut(s) 256
CviAII CATG 3 cut(s) 59, 257, 279
CviJI RGCY 3 cut(s) 102, 175, 186
CviKI_1 RGCY 3 cut(s) 102, 175, 186
DdeI CTNAG 1 cut(s) 188
DpnI GATC 1 cut(s) 238
DpnII GATC 1 cut(s) 236
DraIII CACNNNGTG 1 cut(s) 245
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco32I GATATC 1 cut(s) 143
EcoNI CCTNNNNNAGG 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 232
EcoRV GATATC 1 cut(s) 143
FaeI CATG 3 cut(s) 62, 260, 282
FaiI YATR 5 cut(s) 60, 79, 93, 258, 280
FatI CATG 3 cut(s) 58, 256, 278
FauI CCCGC 2 cut(s) 43, 188
Fnu4HI GCNGC 2 cut(s) 184, 252
Fsp4HI GCNGC 2 cut(s) 184, 252
FspI TGCGCA 1 cut(s) 255
GlaI GCGC 1 cut(s) 255
GluI GCNGC 2 cut(s) 184, 252
HhaI GCGC 1 cut(s) 256
Hin1II CATG 3 cut(s) 62, 260, 282
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HincII GTYRAC 1 cut(s) 230
HindII GTYRAC 1 cut(s) 230
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 230
Hpy188III TCNNGA 1 cut(s) 279
Hpy8I GTNNAC 1 cut(s) 230
HpyAV CCTTC 2 cut(s) 114, 122
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 4 cut(s) 8, 47, 215, 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 257
HpyF3I CTNAG 1 cut(s) 188
Hsp92II CATG 3 cut(s) 62, 260, 282
HspAI GCGC 1 cut(s) 254
Kzo9I GATC 1 cut(s) 236
LpnPI CCDG 4 cut(s) 102, 219, 225, 246
Lsp1109I GCAGC 2 cut(s) 195, 238
LweI GCATC 1 cut(s) 238
MaeIII GTNAC 2 cut(s) 131, 149
MalI GATC 1 cut(s) 238
MboI GATC 1 cut(s) 236
MboII GAAGA 2 cut(s) 82, 121
MluCI AATT 1 cut(s) 9
MnlI CCTC 4 cut(s) 56, 66, 99, 273
MslI CAYNNNNRTG 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 44, 257
NdeII GATC 1 cut(s) 236
NlaIII CATG 3 cut(s) 62, 260, 282
NmuCI GTSAC 1 cut(s) 149
NsbI TGCGCA 1 cut(s) 255
NspI RCATGY 1 cut(s) 260
PaeI GCATGC 1 cut(s) 260
PagI TCATGA 1 cut(s) 278
PaqCI CACCTGC 1 cut(s) 220
PkrI GCNGC 2 cut(s) 185, 253
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
RseI CAYNNNNRTG 1 cut(s) 96
SatI GCNGC 2 cut(s) 184, 252
Sau3AI GATC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 234
SetI ASST 5 cut(s) 67, 133, 151, 214, 265
SfaNI GCATC 1 cut(s) 238
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
SphI GCATGC 1 cut(s) 260
Sse9I AATT 1 cut(s) 9
SsiI CCGC 2 cut(s) 36, 181
StyD4I CCNGG 1 cut(s) 232
TaaI ACNGT 1 cut(s) 157
TasI AATT 1 cut(s) 9
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 1 cut(s) 149
TseI GCWGC 2 cut(s) 183, 251
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 2 cut(s) 258, 267
TspRI CASTG 1 cut(s) 160
XagI CCTNNNNNAGG 1 cut(s) 60
XceI RCATGY 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.