Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002152

Physical Location & Seq

Genomic Coordinates Forward (+)

16978292 .. 16978972

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0193000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTGGAGAGGAATTCGTCTACAACTCTGCCTCTTACTAGCCTACCCCATACTCTGGTTCATCTTTGGTCCCAGAGATCCCAAATTCATCATCACAGATGCCTCTCTAACCCAATTCAATTTCACCAACCACAACAAGACCCTCGACTACAACCTTGCGCTCAACATCACCATCACCAACCCCAACAGAAAGGCTGCCATATTCTACGGTAAAATACAAGTCGCGTCTACCTACAGAAACAAAGTATTTTCTCTCGTGACTTTACCTTTTGAACCATTTGGCCAATGCGGCAAGAACAGAACCATTTCGCATCACATACCTCTTAAAGGGAGCAAGTCTCTGGTGTTTGGAGAACGGGAGATTTCCCAGTTTAACTCGGAGACTGTTGCTGGCGTTTACAGTATTGACGTGAGGCTTTATGTTGGGATAAGAGTACTCGGCGGGTACTTCAAGACAAGACATTCCAACCCATCGCACAAGATCGACTGCAACCTGAAAGTTCCTTTGCAGTCTAGTGAAACATCTGCAAATCGCTTCACTTTCAAGACTACCAAGTGCAGAAATGATATATCATTGCAGACCCTGAAGCAGCGGGCTGAATCTGTCCAATTTTTCCTTGGTGACCCGACTGTCCAAGTGTTGCTTGTTTGTATCTATATTTTTGCAGCAGTTCGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

25.7

Weight (kDa)

9.88

Isoelectric Point (pI)

28.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002152)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05901 FvH4_5g05910 FvH4_5g06031 FvH4_5g06041 FvH4_5g06042 FvH4_5g06043
malus_domestica	MD14G1173200.v1.1 MD14G1173300.v1.1
prunus_persica	Prupe.5G167400_v2.0.a1
pyrus_communis	pycom14g14460
rosa_chinensis	RchiOBHm_Chr7g0192821
rosa_laevigata	RLG00000004324 RLG00000004325 RLG00000004326
rosa_multiflora	Rmu_sc0002040.1_g000030
rosa_roxburghii	Rroxscaffold_3G00262640 Rroxscaffold_3G00262650 Rroxscaffold_3G00262660 Rroxscaffold_6G00399920
rosa_rugosa	Rorug03G0193000 Rorug07G0004600 Rorug07G0004700 Rorug07G0004700 Rorug07G0004800
rosa_samantha	Rh3AG244200 Rh3AG244300 Rh3BG279200 Rh3BG279400 Rh3CG274200 Rh3CG274300 Rh3DG271000 Rh7AG130100 Rh7AG130200 Rh7AG130300 Rh7AG130400 Rh7BG131300 Rh7CG134500 Rh7CG134600 Rh7CG134700 Rh7CG134800 Rh7DG132300 Rh7DG132400 Rh7DG132500
rosa_wichuraiana	Rw7G011140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	629
AccB7I	CCANNNNNTGG	1 cut(s)	54
AccI	GTMKAC	2 cut(s)	19, 227
AccII	CGCG	1 cut(s)	224
AciI	CCGC	3 cut(s)	288, 441, 592
AclWI	GGATC	1 cut(s)	71
AcoI	YGGCCR	1 cut(s)	280
AcsI	RAATTY	2 cut(s)	12, 83
AcuI	CTGAAG	1 cut(s)	605
AfaI	GTAC	2 cut(s)	435, 446
AfiI	CCNNNNNNNGG	2 cut(s)	54, 326
AgsI	TTSAA	4 cut(s)	118, 272, 451, 544
AjiI	CACGTC	1 cut(s)	409
Alw26I	GTCTC	2 cut(s)	342, 374
AlwI	GGATC	1 cut(s)	71
AlwNI	CAGNNNCTG	1 cut(s)	583
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	3 cut(s)	194, 589, 665
ApoI	RAATTY	2 cut(s)	12, 83
Asp700I	GAANNNNTTC	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	4 cut(s)	115, 160, 166, 632
AvaII	GGWCC	1 cut(s)	68
BalI	TGGCCA	1 cut(s)	282
BauI	CACGAG	1 cut(s)	254
BbvI	GCAGC	3 cut(s)	181, 601, 677
BccI	CCATC	2 cut(s)	179, 478
BcoDI	GTCTC	2 cut(s)	342, 374
BfaI	CTAG	2 cut(s)	38, 513
BfmI	CTRYAG	1 cut(s)	232
BglI	GCCNNNNNGGC	1 cut(s)	288
BisI	GCNGC	4 cut(s)	195, 289, 590, 666
BlsI	GCNGC	4 cut(s)	196, 290, 591, 667
BmcAI	AGTACT	1 cut(s)	435
Bme18I	GGWCC	1 cut(s)	68
BmgBI	CACGTC	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	70
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	2 cut(s)	88, 319
BmuI	ACTGGG	1 cut(s)	361
BplI	GAGNNNNNCTC	2 cut(s)	322, 354
BsaJI	CCNNGG	1 cut(s)	616
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 326
Bse1I	ACTGG	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	572
BseDI	CCNNGG	1 cut(s)	616
BseLI	CCNNNNNNNGG	2 cut(s)	54, 326
BseMI	GCAATG	1 cut(s)	572
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	3 cut(s)	181, 601, 677
BsgI	GTGCAG	1 cut(s)	577
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	2 cut(s)	54, 326
BsmAI	GTCTC	2 cut(s)	342, 374
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	282
Bsp143I	GATC	2 cut(s)	76, 480
BspACI	CCGC	3 cut(s)	288, 441, 592
BspANI	GGCC	1 cut(s)	282
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	70
BspPI	GGATC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	572
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	616
BssMI	GATC	2 cut(s)	76, 480
BssSI	CACGAG	1 cut(s)	254
BssT1I	CCWWGG	1 cut(s)	616
Bst2BI	CACGAG	1 cut(s)	254
Bst4CI	ACNGT	4 cut(s)	209, 385, 401, 631
BstC8I	GCNNGC	2 cut(s)	391, 594
BstEII	GGTNACC	1 cut(s)	620
BstENI	CCTNNNNNAGG	1 cut(s)	324
BstFNI	CGCG	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	2 cut(s)	79, 483
BstMAI	GTCTC	2 cut(s)	342, 374
BstMBI	GATC	2 cut(s)	76, 480
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstPI	GGTNACC	1 cut(s)	620
BstSFI	CTRYAG	1 cut(s)	232
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	3 cut(s)	181, 601, 677
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	282
BtgZI	GCGATG	1 cut(s)	456
BtrI	CACGTC	1 cut(s)	409
Cac8I	GCNNGC	2 cut(s)	391, 594
CaiI	CAGNNNCTG	1 cut(s)	583
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	68
CseI	GACGC	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	434, 445
CviJI	RGCY	5 cut(s)	41, 194, 282, 415, 596
CviKI_1	RGCY	5 cut(s)	41, 194, 282, 415, 596
CviQI	GTAC	2 cut(s)	434, 445
DpnI	GATC	2 cut(s)	78, 482
DpnII	GATC	2 cut(s)	76, 480
DrdI	GACNNNNNNGTC	1 cut(s)	629
DseDI	GACNNNNNNGTC	1 cut(s)	629
EaeI	YGGCCR	1 cut(s)	280
Eco130I	CCWWGG	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	605
Eco91I	GGTNACC	1 cut(s)	620
EcoNI	CCTNNNNNAGG	1 cut(s)	324
EcoO65I	GGTNACC	1 cut(s)	620
EcoRI	GAATTC	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	616
ErhI	CCWWGG	1 cut(s)	616
FaiI	YATR	6 cut(s)	50, 200, 317, 420, 569, 657
FalI	AAGNNNNNCTT	2 cut(s)	627, 659
FaqI	GGGAC	1 cut(s)	54
FauI	CCCGC	2 cut(s)	434, 585
FblI	GTMKAC	2 cut(s)	19, 227
Fnu4HI	GCNGC	4 cut(s)	195, 289, 590, 666
Fsp4HI	GCNGC	4 cut(s)	195, 289, 590, 666
FspBI	CTAG	2 cut(s)	38, 513
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	4 cut(s)	195, 289, 590, 666
HaeIII	GGCC	1 cut(s)	282
HgaI	GACGC	1 cut(s)	213
HhaI	GCGC	1 cut(s)	160
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	1 cut(s)	599
HphI	GGTGA	4 cut(s)	115, 160, 166, 632
Hpy166II	GTNNAC	3 cut(s)	20, 228, 397
Hpy188I	TCNGA	1 cut(s)	379
Hpy188III	TCNNGA	3 cut(s)	256, 451, 544
Hpy8I	GTNNAC	3 cut(s)	20, 228, 397
HpyCH4III	ACNGT	4 cut(s)	209, 385, 401, 631
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	6 cut(s)	489, 508, 527, 558, 577, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
HpySE526I	ACGT	1 cut(s)	408
HspAI	GCGC	1 cut(s)	158
Kzo9I	GATC	2 cut(s)	76, 480
LmnI	GCTCC	1 cut(s)	330
LpnPI	CCDG	7 cut(s)	40, 85, 326, 375, 380, 506, 596
Lsp1109I	GCAGC	3 cut(s)	181, 601, 677
LweI	GCATC	2 cut(s)	88, 319
MaeI	CTAG	2 cut(s)	38, 513
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	2 cut(s)	256, 620
MalI	GATC	2 cut(s)	78, 482
MboI	GATC	2 cut(s)	76, 480
MflI	RGATCY	1 cut(s)	76
MlsI	TGGCCA	1 cut(s)	282
MluCI	AATT	5 cut(s)	12, 83, 113, 118, 608
MluNI	TGGCCA	1 cut(s)	282
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	5 cut(s)	41, 112, 152, 330, 405
Mox20I	TGGCCA	1 cut(s)	282
MroXI	GAANNNNTTC	1 cut(s)	304
MscI	TGGCCA	1 cut(s)	282
MseI	TTAA	3 cut(s)	324, 372, 679
Msp20I	TGGCCA	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	592
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	288
NdeII	GATC	2 cut(s)	76, 480
NlaIV	GGNNCC	1 cut(s)	70
NmeAIII	GCCGAG	1 cut(s)	417
NmuCI	GTSAC	2 cut(s)	256, 620
PdmI	GAANNNNTTC	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	599
PflMI	CCANNNNNTGG	1 cut(s)	54
PkrI	GCNGC	4 cut(s)	196, 290, 591, 667
PspEI	GGTNACC	1 cut(s)	620
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	68
PstNI	CAGNNNCTG	1 cut(s)	583
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	2 cut(s)	435, 446
RsaNI	GTAC	2 cut(s)	434, 445
SaqAI	TTAA	3 cut(s)	324, 372, 679
SatI	GCNGC	4 cut(s)	195, 289, 590, 666
Sau3AI	GATC	2 cut(s)	76, 480
Sau96I	GGNCC	1 cut(s)	68
ScaI	AGTACT	1 cut(s)	435
SetI	ASST	6 cut(s)	156, 233, 268, 322, 411, 495
SfaNI	GCATC	2 cut(s)	88, 319
SfcI	CTRYAG	1 cut(s)	232
SinI	GGWCC	1 cut(s)	68
Sse9I	AATT	5 cut(s)	12, 83, 113, 118, 608
SsiI	CCGC	3 cut(s)	288, 441, 592
SspMI	CTAG	2 cut(s)	38, 513
StyI	CCWWGG	1 cut(s)	616
TaaI	ACNGT	4 cut(s)	209, 385, 401, 631
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	2 cut(s)	144, 483
TasI	AATT	5 cut(s)	12, 83, 113, 118, 608
TatI	WGTACW	1 cut(s)	433
TauI	GCSGC	1 cut(s)	291
TfiI	GAWTC	1 cut(s)	599
Tru1I	TTAA	3 cut(s)	324, 372, 679
Tru9I	TTAA	3 cut(s)	324, 372, 679
TseFI	GTSAC	2 cut(s)	256, 620
TseI	GCWGC	3 cut(s)	194, 589, 665
Tsp45I	GTSAC	2 cut(s)	256, 620
TspDTI	ATGAA	2 cut(s)	49, 76
Van91I	CCANNNNNTGG	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	68
XagI	CCTNNNNNAGG	1 cut(s)	324
XapI	RAATTY	2 cut(s)	12, 83
XcmI	CCANNNNNNNNNTGG	1 cut(s)	614
XmiI	GTMKAC	2 cut(s)	19, 227
XmnI	GAANNNNTTC	1 cut(s)	304
XspI	CTAG	2 cut(s)	38, 513
ZrmI	AGTACT	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.