Rh3CG274200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002152
Physical Location & Seq
Forward (+)
27235500 .. 27236266
767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG274200.1

Sequence Viewer

Length: 201 bp
ATGAGCGGGTCTCCGGCAAAGTTAGTTTTAGCTTTATTAGCAGTATATCTTCTTCTGGGTGCTTTTACTGCCACTTCTGCAATGATCCCTCATGGTGATGAGAAGAGTTCATGGCATGTTGATACATATGGATTGAGGAAGATATTGGAAGAAAAGGAGGTAGCTTTGGATGCCAAAATGTCATTGCTAGCAAGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.16

Weight (kDa)

8.08

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 1 cut(s) 6
AclWI GGATC 1 cut(s) 79
AluBI AGCT 2 cut(s) 32, 164
AluI AGCT 2 cut(s) 32, 164
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 107
AsuNHI GCTAGC 1 cut(s) 187
BarI GAAGNNNNNNTAC 2 cut(s) 36, 68
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 1 cut(s) 188
BmsI GCATC 1 cut(s) 160
BmtI GCTAGC 1 cut(s) 191
BplI GAGNNNNNCTC 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 15
Bse3DI GCAATG 2 cut(s) 87, 182
BseGI GGATG 1 cut(s) 175
BseMI GCAATG 2 cut(s) 87, 182
BsiSI CCGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 15
Bso31I GGTCTC 1 cut(s) 15
Bsp143I GATC 1 cut(s) 84
BspACI CCGC 1 cut(s) 6
BspOI GCTAGC 1 cut(s) 191
BspPI GGATC 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 15
BsrBI CCGCTC 1 cut(s) 6
BsrDI GCAATG 2 cut(s) 87, 182
BssMI GATC 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 189
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 1 cut(s) 87
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 1 cut(s) 84
BstMWI GCNNNNNNNGC 4 cut(s) 38, 68, 77, 170
BstNSI RCATGY 1 cut(s) 119
BtsCI GGATG 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 189
CviAII CATG 3 cut(s) 92, 111, 116
CviJI RGCY 2 cut(s) 32, 164
CviKI_1 RGCY 2 cut(s) 32, 164
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco31I GGTCTC 1 cut(s) 15
FaeI CATG 3 cut(s) 95, 114, 119
FaiI YATR 6 cut(s) 46, 93, 112, 117, 127, 129
FatI CATG 3 cut(s) 91, 110, 115
FauNDI CATATG 1 cut(s) 127
FokI GGATG 1 cut(s) 182
FspBI CTAG 1 cut(s) 188
HapII CCGG 1 cut(s) 14
Hin1II CATG 3 cut(s) 95, 114, 119
HpaII CCGG 1 cut(s) 14
HphI GGTGA 1 cut(s) 107
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 68, 77, 170
Hsp92II CATG 3 cut(s) 95, 114, 119
Kzo9I GATC 1 cut(s) 84
LpnPI CCDG 2 cut(s) 27, 41
LweI GCATC 1 cut(s) 160
MaeI CTAG 1 cut(s) 188
MalI GATC 1 cut(s) 86
MbiI CCGCTC 1 cut(s) 6
MboI GATC 1 cut(s) 84
MboII GAAGA 5 cut(s) 41, 44, 115, 151, 161
MnlI CCTC 3 cut(s) 99, 129, 151
MslI CAYNNNNRTG 1 cut(s) 96
MspI CCGG 1 cut(s) 14
MwoI GCNNNNNNNGC 4 cut(s) 38, 68, 77, 170
NdeI CATATG 1 cut(s) 127
NdeII GATC 1 cut(s) 84
NheI GCTAGC 1 cut(s) 187
NlaIII CATG 3 cut(s) 95, 114, 119
NspI RCATGY 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 96
Sau3AI GATC 1 cut(s) 84
SetI ASST 3 cut(s) 34, 162, 166
SfaNI GCATC 1 cut(s) 160
SgeI CNNG 6 cut(s) 19, 26, 68, 104, 123, 128
SmiMI CAYNNNNRTG 1 cut(s) 96
SsiI CCGC 1 cut(s) 6
SspMI CTAG 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 99
XceI RCATGY 1 cut(s) 119
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.