Rh3DG271000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
27133179 .. 27134090
912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG271000.1

Sequence Viewer

Length: 315 bp
ATGATGAAAGGTTCTCCGGCAAAGTTAGCTTTAGCTGTAATAGCAATATACTTTCTTGTGGGTGCTTTTCCTGCAACTTCTGCATTAGTTCCTCATGGTGATGAGAAGAGTTCATGGCATGTTGACTGTATACATGGCTTGACAAGGATACTTGGAAGAAAAGAAGGTAACTTTGGATGTCAAAATGTCATTGTTAGCAAGAAAATAGTGCCCACTTGGAGCCTAAAAGTAACGAGCAAATCCCCACCTCCACCACCCACTAAGAATACGGCAACATCACTAGGTGCTACCGTATCTCCTCCAGTTGCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

10.86

Weight (kDa)

9.86

Isoelectric Point (pI)

32.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 130
AdeI CACNNNGTG 1 cut(s) 284
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AluBI AGCT 2 cut(s) 29, 35
AluI AGCT 2 cut(s) 29, 35
AlwNI CAGNNNCTG 1 cut(s) 308
ApeKI GCWGC 1 cut(s) 308
AsuHPI GGTGA 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 295
BceAI ACGGC 1 cut(s) 285
BciVI GTATCC 1 cut(s) 141
BfaI CTAG 1 cut(s) 281
BfuI GTATCC 1 cut(s) 141
BisI GCNGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 310
BmiI GGNNCC 1 cut(s) 221
BpmI CTGGAG 1 cut(s) 285
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bse1I ACTGG 1 cut(s) 302
BseGI GGATG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 302
BseRI GAGGAG 1 cut(s) 288
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 1 cut(s) 295
BsiSI CCGG 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 221
BsrI ACTGG 1 cut(s) 302
BssNAI GTATAC 1 cut(s) 131
Bst1107I GTATAC 1 cut(s) 131
Bst4CI ACNGT 2 cut(s) 128, 292
Bst6I CTCTTC 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 261
BstF5I GGATG 1 cut(s) 182
BstMWI GCNNNNNNNGC 4 cut(s) 26, 41, 71, 80
BstNSI RCATGY 1 cut(s) 122
BstSLI GKGCMC 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 295
BstZ17I GTATAC 1 cut(s) 131
BsuI GTATCC 1 cut(s) 141
BtsCI GGATG 1 cut(s) 182
CaiI CAGNNNCTG 1 cut(s) 308
CviAII CATG 5 cut(s) 95, 114, 119, 134, 312
CviJI RGCY 4 cut(s) 29, 35, 138, 222
CviKI_1 RGCY 4 cut(s) 29, 35, 138, 222
DdeI CTNAG 1 cut(s) 261
DraIII CACNNNGTG 1 cut(s) 284
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
FaeI CATG 5 cut(s) 98, 117, 122, 137, 315
FaiI YATR 7 cut(s) 49, 96, 115, 120, 131, 135, 313
FatI CATG 5 cut(s) 94, 113, 118, 133, 311
FblI GTMKAC 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 309
FokI GGATG 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 309
FspBI CTAG 1 cut(s) 281
GluI GCNGC 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 285
HapII CCGG 1 cut(s) 17
Hin1II CATG 5 cut(s) 98, 117, 122, 137, 315
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HpaII CCGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 2 cut(s) 124, 131
Hpy8I GTNNAC 2 cut(s) 124, 131
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 2 cut(s) 128, 292
HpyCH4V TGCA 3 cut(s) 74, 83, 311
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 41, 71, 80
HpyF3I CTNAG 1 cut(s) 261
Hsp92II CATG 5 cut(s) 98, 117, 122, 137, 315
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 2 cut(s) 30, 84
Lsp1109I GCAGC 1 cut(s) 295
MaeI CTAG 1 cut(s) 281
MaeIII GTNAC 2 cut(s) 167, 229
MboII GAAGA 2 cut(s) 118, 168
MhlI GDGCHC 1 cut(s) 213
MnlI CCTC 3 cut(s) 102, 258, 309
MslI CAYNNNNRTG 1 cut(s) 99
MspI CCGG 1 cut(s) 17
MwoI GCNNNNNNNGC 4 cut(s) 26, 41, 71, 80
NlaIII CATG 5 cut(s) 98, 117, 122, 137, 315
NlaIV GGNNCC 1 cut(s) 221
NspI RCATGY 1 cut(s) 122
PkrI GCNGC 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 221
PstNI CAGNNNCTG 1 cut(s) 308
RseI CAYNNNNRTG 1 cut(s) 99
SatI GCNGC 1 cut(s) 309
SduI GDGCHC 1 cut(s) 213
SetI ASST 6 cut(s) 13, 31, 37, 169, 250, 286
SmiMI CAYNNNNRTG 1 cut(s) 99
SspMI CTAG 1 cut(s) 281
TaaI ACNGT 2 cut(s) 128, 292
TseI GCWGC 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 20, 102
XceI RCATGY 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 130
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.