Rh3BG279200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
27414571 .. 27428502
13932 bp
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UTR
Exon/CDS
Intron
Rh3BG279200.1

Sequence Viewer

Length: 366 bp
ATGATGAAAGGTTCTCCGGCGATGTTAGCTTTAGCTGTAATAGCAATATACCTTCTTGTGGGTGCTTTTCCTGCAACTTCTGCATTAGTTCCTCATGGTGATGAGAAGAGTTCATGGCATGTTGACTGTATACATGGCTTGACAAGGATACTTGGAAGAAAAGAAGGTAACTTTGGATGTCAAAATATCATTGTTAGCAAGAAAATAGTGCCCACTCGGAGCCTAAAAGTAACGAGCAAATCCCCGCCTCCACCACCCACTAAGAATACGGCAACATCACTGGGTGCTACCGCCACAGGTGCAAATTACAAAGATACAAGCATGACCGTTAGGATTACAAAAGGATACCAAATGGATTCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.83

Weight (kDa)

9.83

Isoelectric Point (pI)

28.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 130
AciI CCGC 2 cut(s) 245, 291
AdeI CACNNNGTG 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 58
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AluBI AGCT 2 cut(s) 29, 35
AluI AGCT 2 cut(s) 29, 35
AsuHPI GGTGA 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 213
BceAI ACGGC 1 cut(s) 285
BciVI GTATCC 2 cut(s) 141, 338
BfuI GTATCC 2 cut(s) 141, 338
BmiI GGNNCC 1 cut(s) 221
BmrI ACTGGG 1 cut(s) 290
BmuI ACTGGG 1 cut(s) 290
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 182
BseLI CCNNNNNNNGG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 285
BseSI GKGCMC 1 cut(s) 213
BsiSI CCGG 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 213
BspACI CCGC 2 cut(s) 245, 291
BspLI GGNNCC 1 cut(s) 221
BsrI ACTGG 1 cut(s) 285
BssNAI GTATAC 1 cut(s) 131
Bst1107I GTATAC 1 cut(s) 131
Bst4CI ACNGT 2 cut(s) 128, 328
Bst6I CTCTTC 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 261
BstF5I GGATG 1 cut(s) 182
BstMWI GCNNNNNNNGC 5 cut(s) 26, 41, 71, 80, 299
BstNSI RCATGY 1 cut(s) 122
BstSLI GKGCMC 1 cut(s) 213
BstZ17I GTATAC 1 cut(s) 131
BsuI GTATCC 2 cut(s) 141, 338
BtgZI GCGATG 1 cut(s) 35
BtsCI GGATG 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 278
CviAII CATG 5 cut(s) 95, 114, 119, 134, 322
CviJI RGCY 4 cut(s) 29, 35, 138, 222
CviKI_1 RGCY 4 cut(s) 29, 35, 138, 222
DdeI CTNAG 1 cut(s) 261
DraIII CACNNNGTG 1 cut(s) 284
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
FaeI CATG 5 cut(s) 98, 117, 122, 137, 325
FaiI YATR 7 cut(s) 49, 96, 115, 120, 131, 135, 323
FatI CATG 5 cut(s) 94, 113, 118, 133, 321
FauI CCCGC 1 cut(s) 252
FblI GTMKAC 1 cut(s) 130
FokI GGATG 1 cut(s) 189
HapII CCGG 1 cut(s) 17
Hin1II CATG 5 cut(s) 98, 117, 122, 137, 325
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 1 cut(s) 356
HpaII CCGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 2 cut(s) 124, 131
Hpy188I TCNGA 1 cut(s) 219
Hpy8I GTNNAC 2 cut(s) 124, 131
HpyAV CCTTC 2 cut(s) 62, 158
HpyCH4III ACNGT 2 cut(s) 128, 328
HpyCH4V TGCA 3 cut(s) 74, 83, 302
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 41, 71, 80, 299
HpyF3I CTNAG 1 cut(s) 261
Hsp92II CATG 5 cut(s) 98, 117, 122, 137, 325
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 4 cut(s) 30, 84, 266, 282
MaeIII GTNAC 2 cut(s) 167, 229
MboII GAAGA 2 cut(s) 118, 168
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 1 cut(s) 304
MnlI CCTC 2 cut(s) 102, 258
MslI CAYNNNNRTG 1 cut(s) 99
MspI CCGG 1 cut(s) 17
MwoI GCNNNNNNNGC 5 cut(s) 26, 41, 71, 80, 299
NlaIII CATG 5 cut(s) 98, 117, 122, 137, 325
NlaIV GGNNCC 1 cut(s) 221
NspI RCATGY 1 cut(s) 122
PfeI GAWTC 1 cut(s) 356
PspN4I GGNNCC 1 cut(s) 221
RseI CAYNNNNRTG 1 cut(s) 99
SduI GDGCHC 1 cut(s) 213
SetI ASST 6 cut(s) 13, 31, 37, 54, 169, 301
SmiMI CAYNNNNRTG 1 cut(s) 99
Sse9I AATT 1 cut(s) 304
SsiI CCGC 2 cut(s) 245, 291
TaaI ACNGT 2 cut(s) 128, 328
TasI AATT 1 cut(s) 304
TfiI GAWTC 1 cut(s) 356
TscAI CASTG 1 cut(s) 285
TspDTI ATGAA 2 cut(s) 20, 102
TspRI CASTG 1 cut(s) 285
XceI RCATGY 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.