Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002152

Physical Location & Seq

Genomic Coordinates Forward (+)

10862022 .. 10865024

Gene Structure 3003 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG134600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGATATTGCCTATAGAGATGGCTTGAGCAAGATAATTGGAAGAAGAGAAGGTAACTTTGGATGTCAAGGTGACAGTGTTAGCACGAAAACAAAGCCCACCCACAGCCTAAGAACAACCCCATCCCCACCACCTGCGGCCTTTAGTAGTAAACCAGGATCACAGCCTGAAGATGGTGAGAAGAGTTTATGGCATGTTGACTGTAGACATGGCTTGATGAAGCTACTTGGAAGAAAAGAAGGTTACTTTGGAGGCCAAAATGGCTTTGTTAGCAAGAAAATAGTGCCAACGCGCAGCCTAAGAGTAATGGTTACATCAAAAGCGCCACCTTCACCGGTTAAAAACAAAGCAACGTCACAGCATGTTACTGCTGCCCCTCCATCATCCATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.03

Weight (kDa)

10.13

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002152)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05901 FvH4_5g05910 FvH4_5g06031 FvH4_5g06041 FvH4_5g06042 FvH4_5g06043
malus_domestica	MD14G1173200.v1.1 MD14G1173300.v1.1
prunus_persica	Prupe.5G167400_v2.0.a1
pyrus_communis	pycom14g14460
rosa_chinensis	RchiOBHm_Chr7g0192821
rosa_laevigata	RLG00000004324 RLG00000004325 RLG00000004326
rosa_multiflora	Rmu_sc0002040.1_g000030
rosa_roxburghii	Rroxscaffold_3G00262640 Rroxscaffold_3G00262650 Rroxscaffold_3G00262660 Rroxscaffold_6G00399920
rosa_rugosa	Rorug03G0193000 Rorug07G0004600 Rorug07G0004700 Rorug07G0004700 Rorug07G0004800
rosa_samantha	Rh3AG244200 Rh3AG244300 Rh3BG279200 Rh3BG279400 Rh3CG274200 Rh3CG274300 Rh3DG271000 Rh7AG130100 Rh7AG130200 Rh7AG130300 Rh7AG130400 Rh7BG131300 Rh7CG134500 Rh7CG134600 Rh7CG134700 Rh7CG134800 Rh7DG132300 Rh7DG132400 Rh7DG132500
rosa_wichuraiana	Rw7G011140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	142
Acc36I	ACCTGC	1 cut(s)	142
AccI	GTMKAC	1 cut(s)	205
AccII	CGCG	1 cut(s)	292
AciI	CCGC	1 cut(s)	137
AclWI	GGATC	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgeI	ACCGGT	1 cut(s)	334
AjnI	CCWGG	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	4 cut(s)	42, 74, 231, 263
AluBI	AGCT	1 cut(s)	223
AluI	AGCT	1 cut(s)	223
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	2 cut(s)	138, 253
ApeKI	GCWGC	2 cut(s)	294, 371
AsiGI	ACCGGT	1 cut(s)	334
AspLEI	GCGC	2 cut(s)	294, 325
AsuHPI	GGTGA	3 cut(s)	83, 188, 324
BbvI	GCAGC	2 cut(s)	306, 358
BccI	CCATC	4 cut(s)	14, 130, 167, 388
BciT130I	CCWGG	1 cut(s)	156
BfmI	CTRYAG	2 cut(s)	13, 202
BfoI	RGCGCY	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	142
BglI	GCCNNNNNGGC	1 cut(s)	261
BisI	GCNGC	3 cut(s)	138, 295, 372
BlsI	GCNGC	3 cut(s)	139, 296, 373
Bme1390I	CCNGG	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	46
BsaWI	WCCGGW	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse118I	RCCGGY	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	156
BseGI	GGATG	3 cut(s)	68, 122, 383
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	387
BseXI	GCAGC	2 cut(s)	306, 358
Bsh1236I	CGCG	1 cut(s)	292
BshFI	GGCC	2 cut(s)	140, 255
BshTI	ACCGGT	1 cut(s)	334
BsiSI	CCGG	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	173
BsnI	GGCC	2 cut(s)	140, 255
Bsp143I	GATC	1 cut(s)	158
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	2 cut(s)	140, 255
BspFNI	CGCG	1 cut(s)	292
BspMI	ACCTGC	1 cut(s)	142
BspPI	GGATC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	334
BssAI	RCCGGY	1 cut(s)	334
BssMI	GATC	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	77, 203
Bst6I	CTCTTC	2 cut(s)	40, 176
BstDEI	CTNAG	2 cut(s)	110, 299
BstF5I	GGATG	3 cut(s)	68, 122, 383
BstFNI	CGCG	1 cut(s)	292
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	2 cut(s)	294, 325
BstKTI	GATC	1 cut(s)	161
BstMBI	GATC	1 cut(s)	158
BstMWI	GCNNNNNNNGC	2 cut(s)	261, 270
BstNI	CCWGG	1 cut(s)	156
BstNSI	RCATGY	2 cut(s)	197, 365
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	2 cut(s)	13, 202
BstUI	CGCG	1 cut(s)	292
BstV1I	GCAGC	2 cut(s)	306, 358
BsuRI	GGCC	2 cut(s)	140, 255
BtsCI	GGATG	3 cut(s)	68, 122, 383
BtsIMutI	CAGTG	1 cut(s)	82
BveI	ACCTGC	1 cut(s)	142
CfoI	GCGC	2 cut(s)	294, 325
Cfr10I	RCCGGY	1 cut(s)	334
CspAI	ACCGGT	1 cut(s)	334
CviAII	CATG	3 cut(s)	194, 209, 362
DdeI	CTNAG	2 cut(s)	110, 299
DpnI	GATC	1 cut(s)	160
DpnII	GATC	1 cut(s)	158
Eam1104I	CTCTTC	2 cut(s)	40, 176
EarI	CTCTTC	2 cut(s)	40, 176
Eco57I	CTGAAG	1 cut(s)	189
EcoRII	CCWGG	1 cut(s)	154
FaeI	CATG	3 cut(s)	197, 212, 365
FaiI	YATR	5 cut(s)	15, 190, 195, 210, 363
FatI	CATG	3 cut(s)	193, 208, 361
FblI	GTMKAC	1 cut(s)	205
Fnu4HI	GCNGC	3 cut(s)	138, 295, 372
FokI	GGATG	3 cut(s)	75, 109, 370
Fsp4HI	GCNGC	3 cut(s)	138, 295, 372
GlaI	GCGC	2 cut(s)	293, 324
GluI	GCNGC	3 cut(s)	138, 295, 372
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	2 cut(s)	140, 255
HapII	CCGG	1 cut(s)	335
HhaI	GCGC	2 cut(s)	294, 325
Hin1II	CATG	3 cut(s)	197, 212, 365
Hin6I	GCGC	2 cut(s)	292, 323
HinP1I	GCGC	2 cut(s)	292, 323
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	3 cut(s)	83, 188, 324
Hpy166II	GTNNAC	3 cut(s)	152, 199, 206
Hpy8I	GTNNAC	3 cut(s)	152, 199, 206
HpyAV	CCTTC	3 cut(s)	44, 233, 339
HpyCH4III	ACNGT	2 cut(s)	77, 203
HpyCH4IV	ACGT	1 cut(s)	353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	261, 270
HpyF3I	CTNAG	2 cut(s)	110, 299
HpySE526I	ACGT	1 cut(s)	353
Hsp92II	CATG	3 cut(s)	197, 212, 365
HspAI	GCGC	2 cut(s)	292, 323
Kzo9I	GATC	1 cut(s)	158
LpnPI	CCDG	5 cut(s)	141, 147, 168, 180, 348
Lsp1109I	GCAGC	2 cut(s)	306, 358
MaeII	ACGT	1 cut(s)	353
MaeIII	GTNAC	6 cut(s)	53, 71, 242, 310, 354, 364
MalI	GATC	1 cut(s)	160
MboI	GATC	1 cut(s)	158
MboII	GAAGA	5 cut(s)	54, 57, 182, 193, 243
MluCI	AATT	1 cut(s)	36
MnlI	CCTC	2 cut(s)	245, 387
MseI	TTAA	1 cut(s)	339
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MvnI	CGCG	1 cut(s)	292
MwoI	GCNNNNNNNGC	2 cut(s)	261, 270
NdeII	GATC	1 cut(s)	158
NlaIII	CATG	3 cut(s)	197, 212, 365
NmuCI	GTSAC	2 cut(s)	71, 354
NspI	RCATGY	2 cut(s)	197, 365
PaqCI	CACCTGC	1 cut(s)	142
PinAI	ACCGGT	1 cut(s)	334
PkrI	GCNGC	3 cut(s)	139, 296, 373
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	3 cut(s)	138, 295, 372
Sau3AI	GATC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	7 cut(s)	55, 73, 136, 225, 244, 331, 356
SfcI	CTRYAG	2 cut(s)	13, 202
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	154
TaaI	ACNGT	2 cut(s)	77, 203
TaiI	ACGT	1 cut(s)	356
TasI	AATT	1 cut(s)	36
TauI	GCSGC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	2 cut(s)	71, 354
TseI	GCWGC	2 cut(s)	294, 371
Tsp45I	GTSAC	2 cut(s)	71, 354
TspDTI	ATGAA	1 cut(s)	233
TspRI	CASTG	1 cut(s)	82
XceI	RCATGY	2 cut(s)	197, 365
XmiI	GTMKAC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.