Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002152

Physical Location & Seq

Genomic Coordinates Reverse (-)

56655278 .. 56658764

Gene Structure 3487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00262640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAGTGGTTCTCCAGCAAAGTTGGTTTTAGCTGTACTAGCAGTATATCTTCTTGTGGGTGCCTTTACTGCAACCTCTGCAATGATTCCCCATGGTGATGAGACGAGTTCATGGCATGTTGATAAAGATGGATTGAGGAAGATACTTGGAAGAAAAGAAGGTGATAAGAAGAGTTCATGGCATGTTGATAAAGATGGATTGAGGAAGATACTTGGAAGAAAAGGAGGTGATGAGAAGAGTTCATGGCATGTTGACTGTATACATGGCTTGACAAGGATACTTGGAAAAAAAGAAGGTTACTTCGGATGTCAAAATGTAATTGTTAGCAAGAAGATAGTGCCCACTCGGAGCCTAAAAGTAACGAGCAAATCCCCTCCTCCACGACCCACTAAGAATACGGCCAAGTCACTGGGTGCTACCGTATCACCTCCAGTTGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

15.75

Weight (kDa)

10.01

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002152)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05901 FvH4_5g05910 FvH4_5g06031 FvH4_5g06041 FvH4_5g06042 FvH4_5g06043
malus_domestica	MD14G1173200.v1.1 MD14G1173300.v1.1
prunus_persica	Prupe.5G167400_v2.0.a1
pyrus_communis	pycom14g14460
rosa_chinensis	RchiOBHm_Chr7g0192821
rosa_laevigata	RLG00000004324 RLG00000004325 RLG00000004326
rosa_multiflora	Rmu_sc0002040.1_g000030
rosa_roxburghii	Rroxscaffold_3G00262640 Rroxscaffold_3G00262650 Rroxscaffold_3G00262660 Rroxscaffold_6G00399920
rosa_rugosa	Rorug03G0193000 Rorug07G0004600 Rorug07G0004700 Rorug07G0004700 Rorug07G0004800
rosa_samantha	Rh3AG244200 Rh3AG244300 Rh3BG279200 Rh3BG279400 Rh3CG274200 Rh3CG274300 Rh3DG271000 Rh7AG130100 Rh7AG130200 Rh7AG130300 Rh7AG130400 Rh7BG131300 Rh7CG134500 Rh7CG134600 Rh7CG134700 Rh7CG134800 Rh7DG132300 Rh7DG132400 Rh7DG132500
rosa_wichuraiana	Rw7G011140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	259
AcoI	YGGCCR	1 cut(s)	399
AdeI	CACNNNGTG	1 cut(s)	413
AfaI	GTAC	1 cut(s)	36
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	95
AlwNI	CAGNNNCTG	1 cut(s)	437
AoxI	GGCC	1 cut(s)	399
ApeKI	GCWGC	1 cut(s)	437
AsuHPI	GGTGA	4 cut(s)	107, 173, 239, 417
BaeGI	GKGCMC	1 cut(s)	342
BanI	GGYRCC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	2 cut(s)	122, 188
BceAI	ACGGC	1 cut(s)	414
BciVI	GTATCC	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	1 cut(s)	38
BfuI	GTATCC	1 cut(s)	270
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
BmiI	GGNNCC	2 cut(s)	61, 350
BmrI	ACTGGG	1 cut(s)	419
BmuI	ACTGGG	1 cut(s)	419
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	91
Bse1I	ACTGG	2 cut(s)	414, 431
Bse3DI	GCAATG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	311
BseMI	GCAATG	1 cut(s)	87
BseNI	ACTGG	2 cut(s)	414, 431
BseRI	GAGGAG	1 cut(s)	366
BseSI	GKGCMC	1 cut(s)	342
BseXI	GCAGC	1 cut(s)	424
BshFI	GGCC	1 cut(s)	401
BshNI	GGYRCC	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	95
BsmBI	CGTCTC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp19I	CCATGG	1 cut(s)	91
BspANI	GGCC	1 cut(s)	401
BspLI	GGNNCC	2 cut(s)	61, 350
BspT107I	GGYRCC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	414, 431
BssECI	CCNNGG	1 cut(s)	91
BssNAI	GTATAC	1 cut(s)	260
BssT1I	CCWWGG	1 cut(s)	91
Bst1107I	GTATAC	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	257, 421
Bst6I	CTCTTC	2 cut(s)	164, 230
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstDEI	CTNAG	1 cut(s)	390
BstDSI	CCRYGG	1 cut(s)	91
BstF5I	GGATG	1 cut(s)	311
BstMAI	GTCTC	1 cut(s)	95
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 68, 77
BstNSI	RCATGY	3 cut(s)	119, 185, 251
BstSLI	GKGCMC	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	424
BstXI	CCANNNNNNTGG	1 cut(s)	409
BstZ17I	GTATAC	1 cut(s)	260
BsuI	GTATCC	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	401
BtgI	CCRYGG	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	311
BtsIMutI	CAGTG	1 cut(s)	407
CaiI	CAGNNNCTG	1 cut(s)	437
Csp6I	GTAC	1 cut(s)	35
CviAII	CATG	9 cut(s)	92, 111, 116, 177, 182, 243, 248, 263, 441
CviJI	RGCY	4 cut(s)	32, 267, 351, 401
CviKI_1	RGCY	4 cut(s)	32, 267, 351, 401
CviQI	GTAC	1 cut(s)	35
DdeI	CTNAG	1 cut(s)	390
DraIII	CACNNNGTG	1 cut(s)	413
EaeI	YGGCCR	1 cut(s)	399
Eam1104I	CTCTTC	2 cut(s)	164, 230
EarI	CTCTTC	2 cut(s)	164, 230
Eco130I	CCWWGG	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	9 cut(s)	95, 114, 119, 180, 185, 246, 251, 266, 444
FatI	CATG	9 cut(s)	91, 110, 115, 176, 181, 242, 247, 262, 440
FblI	GTMKAC	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	1 cut(s)	318
Fsp4HI	GCNGC	1 cut(s)	438
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	1 cut(s)	438
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	1 cut(s)	401
Hin1II	CATG	9 cut(s)	95, 114, 119, 180, 185, 246, 251, 266, 444
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	1 cut(s)	85
HphI	GGTGA	4 cut(s)	107, 173, 239, 417
Hpy166II	GTNNAC	2 cut(s)	253, 260
Hpy188I	TCNGA	2 cut(s)	305, 348
Hpy8I	GTNNAC	2 cut(s)	253, 260
HpyAV	CCTTC	2 cut(s)	152, 287
HpyCH4III	ACNGT	2 cut(s)	257, 421
HpyCH4V	TGCA	3 cut(s)	71, 80, 440
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 68, 77
HpyF3I	CTNAG	1 cut(s)	390
Hsp92II	CATG	9 cut(s)	95, 114, 119, 180, 185, 246, 251, 266, 444
LmnI	GCTCC	1 cut(s)	348
LpnPI	CCDG	2 cut(s)	27, 395
Lsp1109I	GCAGC	1 cut(s)	424
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	3 cut(s)	296, 358, 405
MboII	GAAGA	8 cut(s)	41, 151, 162, 181, 217, 228, 247, 343
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	1 cut(s)	318
MnlI	CCTC	7 cut(s)	85, 129, 195, 218, 384, 387, 438
MslI	CAYNNNNRTG	1 cut(s)	96
MwoI	GCNNNNNNNGC	3 cut(s)	38, 68, 77
NcoI	CCATGG	1 cut(s)	91
NlaIII	CATG	9 cut(s)	95, 114, 119, 180, 185, 246, 251, 266, 444
NlaIV	GGNNCC	2 cut(s)	61, 350
NmuCI	GTSAC	1 cut(s)	405
NspI	RCATGY	3 cut(s)	119, 185, 251
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	439
PspN4I	GGNNCC	2 cut(s)	61, 350
PstNI	CAGNNNCTG	1 cut(s)	437
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	96
SatI	GCNGC	1 cut(s)	438
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	6 cut(s)	34, 77, 163, 229, 298, 430
SmiMI	CAYNNNNRTG	1 cut(s)	96
Sse9I	AATT	1 cut(s)	318
SspMI	CTAG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	2 cut(s)	257, 421
TasI	AATT	1 cut(s)	318
TatI	WGTACW	1 cut(s)	34
TfiI	GAWTC	1 cut(s)	85
TscAI	CASTG	1 cut(s)	414
TseFI	GTSAC	1 cut(s)	405
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	1 cut(s)	405
TspDTI	ATGAA	3 cut(s)	99, 165, 231
TspRI	CASTG	1 cut(s)	414
XceI	RCATGY	3 cut(s)	119, 185, 251
XmiI	GTMKAC	1 cut(s)	259
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.