Rroxscaffold_3G00262670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0017088
Physical Location & Seq
Reverse (-)
56672029 .. 56673027
999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00262670.1

Sequence Viewer

Length: 999 bp
ATGTCACTCTTGCAAAACCCTCTCCAAATTCGACCGTTGATTGGCTACCCATTTCAAAACTGCCCCAACTCCTTCCAACCCACCACCCCAAACCTCCATCTCCGTCCCAAAACACCTCCAAAGCCAATCCATTTCCACCCATCAACACCCAAATGCCAGCAGACCCATCATTCCAGCCCCCAACCCAAAACCCAGGACGACGGCATCCCCGCCGAGGATGTCAAAATCCTTGCCAAGTTCAAGTCCAGGTACAATTACATCCGTGTCCTCGAAGTTTCCCGGAGAGCTGACCACCCTTTCGCCGGCTCAAGGCTTCTCCTTCTTGACGTCCCAGGAAACATCCACAGCATCTCTTATATCTTCAAGAACCTCACCAACACTTATTTCGACGTTTTCGCCACCTTCCCGCCCATTTTGCCTCCCGGACCCCTCGCAATTCTCGGCTTTGGGGCGGGTACGGCTGCCCGGTCCATTCTGGAGCTGTACCCGCAAGGGGTGGTTCATGGGTGGGAGATTGACCCAACTGTGGTTGCTGTGGCAAGAGAGTACTTTGGCCTTTCGAAGCTCGAAAGGCAGTTCCCAGATAGGCTTGTAATCCACATCGGAGACGCATTTAAAGCCTCGTCGAAAGATGGGTTTGCCGGAATTTTGGTGGATTTGTTTGCCCAAGGGAGTTTGGTCCCGGAGCTTCAAGACCCAAATACTTGGGAGATGCTCACCAGGTGTTTGAGAAAAGGCGGGAGAGTAATGGTCAATGTGGGAGGCAGTTGCGTGGAGGCTGAGGACTCGCAGAAAGATGGGAAAGTAGTTATGCAAGACACTTTGAAGGCAATGCATCAGGTTTTCGGCGACAAGCTCTTTGTATTGAGCCTTGGGAATCGGCAGGAAGATAGTTCCATTGCTCTTTCTGGCGATGTGCCTGACGTAGATGCTTGGAAGAAGGCGTTGCCACCTTCTCTAGCTGGTTATGTTGACATGTGGAAGCCATTCAGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

36.71

Weight (kDa)

8.26

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63100
fragaria_vesca FvH4_5g06050
malus_domestica MD06G1167600.v1.1 MD14G1173100.v1.1
rosa_chinensis RchiOBHm_Chr7g0192811
rosa_laevigata RLG00000004327
rosa_multiflora Rmu_sc0002040.1_g000029
rosa_roxburghii Rroxscaffold_3G00262670
rosa_rugosa Rorug07G0004600
rosa_samantha Rh7AG130000 Rh7CG134400 Rh7DG132200
rosa_wichuraiana Rw7G011130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 330
AccB7I CCANNNNNTGG 1 cut(s) 992
AciI CCGC 5 cut(s) 210, 407, 452, 488, 738
AcsI RAATTY 2 cut(s) 27, 645
AcyI GRCGYC 1 cut(s) 327
AdeI CACNNNGTG 1 cut(s) 723
AfaI GTAC 4 cut(s) 251, 457, 485, 548
AfiI CCNNNNNNNGG 7 cut(s) 41, 214, 302, 309, 493, 526, 992
AflIII ACRYGT 1 cut(s) 975
AgsI TTSAA 5 cut(s) 56, 241, 364, 692, 826
AjnI CCWGG 4 cut(s) 192, 245, 331, 719
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AluBI AGCT 6 cut(s) 287, 481, 565, 688, 856, 962
AluI AGCT 6 cut(s) 287, 481, 565, 688, 856, 962
Alw26I GTCTC 1 cut(s) 600
AoxI GGCC 1 cut(s) 553
ApeKI GCWGC 1 cut(s) 461
ApoI RAATTY 2 cut(s) 27, 645
ArsI GACNNNNNNTTYG 4 cut(s) 281, 313, 842, 874
Asp700I GAANNNNTTC 1 cut(s) 986
AspS9I GGNCC 3 cut(s) 425, 468, 679
AsuC2I CCSGG 4 cut(s) 280, 423, 466, 683
AsuHPI GGTGA 2 cut(s) 364, 709
AsuII TTCGAA 1 cut(s) 560
AvaII GGWCC 3 cut(s) 425, 468, 679
BbvCI CCTCAGC 1 cut(s) 780
BbvI GCAGC 1 cut(s) 448
BccI CCATC 5 cut(s) 105, 148, 174, 626, 791
BceAI ACGGC 2 cut(s) 217, 474
BciT130I CCWGG 4 cut(s) 194, 247, 333, 721
BcnI CCSGG 4 cut(s) 280, 423, 466, 683
BcoDI GTCTC 1 cut(s) 600
BfaI CTAG 1 cut(s) 959
BisI GCNGC 1 cut(s) 462
BlsI GCNGC 1 cut(s) 463
BmcAI AGTACT 1 cut(s) 548
Bme1390I CCNGG 8 cut(s) 194, 247, 280, 333, 423, 466, 683, 721
Bme18I GGWCC 3 cut(s) 425, 468, 679
BmgT120I GGNCC 3 cut(s) 425, 468, 679
BmiI GGNNCC 2 cut(s) 427, 681
BmrFI CCNGG 8 cut(s) 194, 247, 280, 333, 423, 466, 683, 721
BmsI GCATC 5 cut(s) 213, 357, 702, 844, 919
BpmI CTGGAG 1 cut(s) 497
Bpu10I CCTNAGC 1 cut(s) 780
Bpu14I TTCGAA 1 cut(s) 560
BpuEI CTTGAG 1 cut(s) 292
BpuMI CCSGG 4 cut(s) 280, 423, 466, 683
BsaHI GRCGYC 1 cut(s) 327
BsaJI CCNNGG 5 cut(s) 192, 213, 331, 667, 871
Bsc4I CCNNNNNNNGG 7 cut(s) 41, 214, 302, 309, 493, 526, 992
Bse118I RCCGGY 1 cut(s) 302
Bse3DI GCAATG 2 cut(s) 837, 897
BseBI CCWGG 4 cut(s) 194, 247, 333, 721
BseDI CCNNGG 5 cut(s) 192, 213, 331, 667, 871
BseGI GGATG 4 cut(s) 204, 223, 258, 339
BseLI CCNNNNNNNGG 7 cut(s) 41, 214, 302, 309, 493, 526, 992
BseMI GCAATG 2 cut(s) 837, 897
BseMII CTCAG 1 cut(s) 771
BseXI GCAGC 1 cut(s) 448
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 1 cut(s) 555
BsiEI CGRYCG 1 cut(s) 35
BsiSI CCGG 6 cut(s) 280, 303, 423, 466, 642, 683
BslFI GGGAC 3 cut(s) 90, 314, 665
BslI CCNNNNNNNGG 7 cut(s) 41, 214, 302, 309, 493, 526, 992
BsmAI GTCTC 1 cut(s) 600
BsmBI CGTCTC 1 cut(s) 600
BsmFI GGGAC 3 cut(s) 90, 314, 665
BsnI GGCC 1 cut(s) 555
Bsp119I TTCGAA 1 cut(s) 560
BspACI CCGC 5 cut(s) 210, 407, 452, 488, 738
BspANI GGCC 1 cut(s) 555
BspCNI CTCAG 1 cut(s) 772
BspLI GGNNCC 2 cut(s) 427, 681
BspT104I TTCGAA 1 cut(s) 560
BsrDI GCAATG 2 cut(s) 837, 897
BsrFI RCCGGY 1 cut(s) 302
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 5 cut(s) 192, 213, 331, 667, 871
BssNI GRCGYC 1 cut(s) 327
BssT1I CCWWGG 2 cut(s) 667, 871
Bst2UI CCWGG 4 cut(s) 194, 247, 333, 721
Bst4CI ACNGT 2 cut(s) 36, 526
BstACI GRCGYC 1 cut(s) 327
BstBI TTCGAA 1 cut(s) 560
BstC8I GCNNGC 2 cut(s) 158, 304
BstDEI CTNAG 1 cut(s) 780
BstF5I GGATG 4 cut(s) 204, 223, 258, 339
BstMAI GTCTC 1 cut(s) 600
BstMCI CGRYCG 1 cut(s) 35
BstMWI GCNNNNNNNGC 5 cut(s) 415, 458, 487, 571, 617
BstNI CCWGG 4 cut(s) 194, 247, 333, 721
BstNSI RCATGY 1 cut(s) 979
BstSCI CCNGG 8 cut(s) 192, 245, 278, 331, 421, 464, 681, 719
BstV1I GCAGC 1 cut(s) 448
BstXI CCANNNNNNTGG 1 cut(s) 705
BsuRI GGCC 1 cut(s) 555
BtgZI GCGATG 1 cut(s) 927
BtsCI GGATG 4 cut(s) 204, 223, 258, 339
BtsIMutI CAGTG 1 cut(s) 997
Cac8I GCNNGC 2 cut(s) 158, 304
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 3 cut(s) 425, 468, 679
CseI GACGC 1 cut(s) 617
CsiI ACCWGGT 1 cut(s) 719
Csp6I GTAC 4 cut(s) 250, 456, 484, 547
CviAII CATG 2 cut(s) 503, 976
CviQI GTAC 4 cut(s) 250, 456, 484, 547
DdeI CTNAG 1 cut(s) 780
DraI TTTAAA 1 cut(s) 616
DraIII CACNNNGTG 1 cut(s) 723
Eco130I CCWWGG 2 cut(s) 667, 871
Eco47I GGWCC 3 cut(s) 425, 468, 679
EcoRII CCWGG 4 cut(s) 192, 245, 331, 719
EcoT14I CCWWGG 2 cut(s) 667, 871
EcoT22I ATGCAT 1 cut(s) 837
ErhI CCWWGG 2 cut(s) 667, 871
Esp3I CGTCTC 1 cut(s) 600
FaeI CATG 2 cut(s) 506, 979
FaiI YATR 5 cut(s) 357, 504, 812, 969, 977
FaqI GGGAC 3 cut(s) 90, 314, 665
FatI CATG 2 cut(s) 502, 975
FauI CCCGC 5 cut(s) 217, 414, 445, 495, 731
Fnu4HI GCNGC 1 cut(s) 462
FokI GGATG 4 cut(s) 191, 230, 245, 326
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 1 cut(s) 959
GluI GCNGC 1 cut(s) 462
GsuI CTGGAG 1 cut(s) 497
HaeIII GGCC 1 cut(s) 555
HapII CCGG 6 cut(s) 280, 303, 423, 466, 642, 683
HgaI GACGC 1 cut(s) 617
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 2 cut(s) 506, 979
HincII GTYRAC 1 cut(s) 973
HindII GTYRAC 1 cut(s) 973
HinfI GANTC 2 cut(s) 785, 877
HpaII CCGG 6 cut(s) 280, 303, 423, 466, 642, 683
HphI GGTGA 2 cut(s) 364, 709
Hpy166II GTNNAC 1 cut(s) 973
Hpy188I TCNGA 1 cut(s) 605
Hpy188III TCNNGA 4 cut(s) 323, 364, 476, 692
Hpy8I GTNNAC 1 cut(s) 973
Hpy99I CGWCG 3 cut(s) 203, 392, 628
HpyAV CCTTC 6 cut(s) 82, 329, 412, 820, 934, 963
HpyCH4III ACNGT 2 cut(s) 36, 526
HpyCH4IV ACGT 3 cut(s) 327, 390, 924
HpyCH4V TGCA 3 cut(s) 13, 814, 835
HpyF10VI GCNNNNNNNGC 5 cut(s) 415, 458, 487, 571, 617
HpyF3I CTNAG 1 cut(s) 780
HpySE526I ACGT 3 cut(s) 327, 390, 924
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 2 cut(s) 506, 979
KroI GCCGGC 1 cut(s) 302
KroNI GCCGGC 1 cut(s) 304
LmnI GCTCC 2 cut(s) 478, 685
Lsp1109I GCAGC 1 cut(s) 448
LweI GCATC 5 cut(s) 213, 357, 702, 844, 919
MabI ACCWGGT 1 cut(s) 719
MaeI CTAG 1 cut(s) 959
MaeII ACGT 3 cut(s) 327, 390, 924
MaeIII GTNAC 1 cut(s) 3
MboII GAAGA 3 cut(s) 352, 899, 949
MluCI AATT 4 cut(s) 27, 253, 435, 645
MlyI GAGTC 1 cut(s) 779
MmeI TCCRAC 1 cut(s) 100
Mph1103I ATGCAT 1 cut(s) 837
MroNI GCCGGC 1 cut(s) 302
MroXI GAANNNNTTC 1 cut(s) 986
MseI TTAA 2 cut(s) 615, 997
MslI CAYNNNNRTG 1 cut(s) 151
MspI CCGG 6 cut(s) 280, 303, 423, 466, 642, 683
MspR9I CCNGG 8 cut(s) 194, 247, 280, 333, 423, 466, 683, 721
MvaI CCWGG 4 cut(s) 194, 247, 333, 721
MwoI GCNNNNNNNGC 5 cut(s) 415, 458, 487, 571, 617
NaeI GCCGGC 1 cut(s) 304
NciI CCSGG 4 cut(s) 280, 423, 466, 683
NgoMIV GCCGGC 1 cut(s) 302
NlaIII CATG 2 cut(s) 506, 979
NlaIV GGNNCC 2 cut(s) 427, 681
NmeAIII GCCGAG 2 cut(s) 238, 420
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 837
NspI RCATGY 1 cut(s) 979
NspV TTCGAA 1 cut(s) 560
PciI ACATGT 1 cut(s) 975
PdiI GCCGGC 1 cut(s) 304
PdmI GAANNNNTTC 1 cut(s) 986
PfeI GAWTC 1 cut(s) 877
PflMI CCANNNNNTGG 1 cut(s) 992
PfoI TCCNGGA 3 cut(s) 278, 421, 681
PkrI GCNGC 1 cut(s) 463
PleI GAGTC 1 cut(s) 779
PpsI GAGTC 1 cut(s) 779
PscI ACATGT 1 cut(s) 975
Psp6I CCWGG 4 cut(s) 192, 245, 331, 719
PspGI CCWGG 4 cut(s) 192, 245, 331, 719
PspN4I GGNNCC 2 cut(s) 427, 681
PspPI GGNCC 3 cut(s) 425, 468, 679
RsaI GTAC 4 cut(s) 251, 457, 485, 548
RsaNI GTAC 4 cut(s) 250, 456, 484, 547
RseI CAYNNNNRTG 1 cut(s) 151
SaqAI TTAA 2 cut(s) 615, 997
SatI GCNGC 1 cut(s) 462
Sau96I GGNCC 3 cut(s) 425, 468, 679
ScaI AGTACT 1 cut(s) 548
SchI GAGTC 1 cut(s) 779
ScrFI CCNGG 8 cut(s) 194, 247, 280, 333, 423, 466, 683, 721
SexAI ACCWGGT 1 cut(s) 719
SfaNI GCATC 5 cut(s) 213, 357, 702, 844, 919
SfuI TTCGAA 1 cut(s) 560
SinI GGWCC 3 cut(s) 425, 468, 679
SmiMI CAYNNNNRTG 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
Sse9I AATT 4 cut(s) 27, 253, 435, 645
SsiI CCGC 5 cut(s) 210, 407, 452, 488, 738
SspMI CTAG 1 cut(s) 959
StyD4I CCNGG 8 cut(s) 192, 245, 278, 331, 421, 464, 681, 719
StyI CCWWGG 2 cut(s) 667, 871
TaaI ACNGT 2 cut(s) 36, 526
TaiI ACGT 3 cut(s) 330, 393, 927
TaqI TCGA 6 cut(s) 31, 270, 387, 560, 567, 626
TasI AATT 4 cut(s) 27, 253, 435, 645
TatI WGTACW 1 cut(s) 546
TfiI GAWTC 1 cut(s) 877
Tru1I TTAA 2 cut(s) 615, 997
Tru9I TTAA 2 cut(s) 615, 997
TscAI CASTG 1 cut(s) 997
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 461
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 491
TspGWI ACGGA 2 cut(s) 92, 251
TspRI CASTG 1 cut(s) 997
Van91I CCANNNNNTGG 1 cut(s) 992
VpaK11BI GGWCC 3 cut(s) 425, 468, 679
XapI RAATTY 2 cut(s) 27, 645
XceI RCATGY 1 cut(s) 979
XmnI GAANNNNTTC 1 cut(s) 986
XspI CTAG 1 cut(s) 959
ZraI GACGTC 1 cut(s) 328
ZrmI AGTACT 1 cut(s) 548
Zsp2I ATGCAT 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.