FvH4_5g06050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017088
Physical Location & Seq
Reverse (-)
3547273 .. 3548262
990 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06050.t1

Sequence Viewer

Length: 990 bp
ATGTCCCTCTTGCAAAACCTCCTCCAAATTCGACCGTTGATTCTCTCCCCGACTCAAACCTCCCCCAACTCTTTCTTACCCAGAAACCACCATTGCCATCCCAAACCACCTCCAAAGCCAATCCATTTCCACCCATCAACACCCAAATGCCAGCAGACCCACCACTCCAGCCGCCAGCCCAAAACCCAAGACAGCATCCCCGCCGAGGAGGTCAAAGTGCTTGCCAAGTTCAAGTCCAGGTTCAATTACATCCGTGTCCTCGAAGTCTCTCGGAGAGCCGACCACCCTTTCGCCGGCTCCAGGCTCCTCCTTCTAGACGTCCCTGGAAACATCCACAGCATCTCCTACATCTTCAAGAACCTCACCAACACTTACTTCGACGTTTTCGCCACCTTGCCGCCAATTCTGCCTCCCGGGCCAATCGCCATTCTCGGGTTCGGAGCGGGCACGGCCGCCCGGTCCATTCTGGAGCTCTACCCCCAAGGTGTGGTTCATGGCTGGGAGATTGACCCCACTGTGGTTGCTGTGGCTAGAGAGTACTTTGGCCTTTTGAAACTCGAAAGGCAGTTCCCGGATCGGCTTGTAATCCATATCGGAGACGCGTTTAAGGCCTCGTCGAAAGATGGATTTGCCGGAATCTTGGTGGATTTGTTTTCCAATGGGAGATTGGTCCCGGAGCTTCAAGACGCCAATACTTGGGAGATGCTCACCAGGCGTTTGAGAAAAGGCGGGAGAGTGATGGTGAATGTGGGAGGTAGTTGTGTGGAGGCTGAGGACTCGGAGATAGATGGGAAGGTGGTTATGGAAGAGACTTTGAAGGCTATGCATCAGGTTTTCGGCAACAAGCTGTTTGTGTTGAGCCTTGGGACCCGGCAGGAGGATAGCTCTATTGCTCTTACTGGTGATGTGCCTGATGTTGAGGCTTGGAAGAAGGCGCTGCCGCCTTCCCTAGCTGGTTATGTCGATATGTGGAAGGCTTATCGTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

330

Amino Acids

36.58

Weight (kDa)

9.03

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63100
fragaria_vesca FvH4_5g06050
malus_domestica MD06G1167600.v1.1 MD14G1173100.v1.1
rosa_chinensis RchiOBHm_Chr7g0192811
rosa_laevigata RLG00000004327
rosa_multiflora Rmu_sc0002040.1_g000029
rosa_roxburghii Rroxscaffold_3G00262670
rosa_rugosa Rorug07G0004600
rosa_samantha Rh7AG130000 Rh7CG134400 Rh7DG132200
rosa_wichuraiana Rw7G011130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 321
AccB7I CCANNNNNTGG 2 cut(s) 487, 696
AccBSI CCGCTC 1 cut(s) 443
AccII CGCG 1 cut(s) 602
AciI CCGC 7 cut(s) 172, 201, 398, 443, 453, 729, 941
AclWI GGATC 1 cut(s) 582
AcoI YGGCCR 1 cut(s) 450
AcsI RAATTY 1 cut(s) 27
AcyI GRCGYC 2 cut(s) 318, 687
AfaI GTAC 1 cut(s) 539
AfiI CCNNNNNNNGG 8 cut(s) 205, 293, 300, 432, 487, 517, 696, 877
AflIII ACRYGT 1 cut(s) 600
AgsI TTSAA 6 cut(s) 232, 244, 355, 553, 683, 817
AjnI CCWGG 4 cut(s) 236, 299, 322, 710
AjuI GAANNNNNNNTTGG 4 cut(s) 359, 391, 474, 506
AluBI AGCT 5 cut(s) 472, 679, 847, 885, 953
AluI AGCT 5 cut(s) 472, 679, 847, 885, 953
Alw21I GWGCWC 1 cut(s) 474
Alw26I GTCTC 3 cut(s) 271, 591, 803
AlwI GGATC 1 cut(s) 582
Ama87I CYCGRG 2 cut(s) 413, 431
AoxI GGCC 4 cut(s) 416, 450, 544, 609
ApeKI GCWGC 1 cut(s) 937
ApoI RAATTY 1 cut(s) 27
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
AspLEI GCGC 1 cut(s) 937
AspS9I GGNCC 4 cut(s) 416, 459, 670, 867
AsuC2I CCSGG 6 cut(s) 414, 415, 457, 572, 674, 871
AsuHPI GGTGA 4 cut(s) 355, 700, 754, 914
AvaI CYCGRG 2 cut(s) 413, 431
AvaII GGWCC 3 cut(s) 459, 670, 867
BaeGI GKGCMC 1 cut(s) 449
BanII GRGCYC 1 cut(s) 474
Bbv12I GWGCWC 1 cut(s) 474
BbvCI CCTCAGC 1 cut(s) 771
BbvI GCAGC 1 cut(s) 924
BccI CCATC 5 cut(s) 105, 142, 617, 733, 782
BceAI ACGGC 1 cut(s) 465
BciT130I CCWGG 4 cut(s) 238, 301, 324, 712
BcnI CCSGG 6 cut(s) 414, 415, 457, 572, 674, 871
BcoDI GTCTC 3 cut(s) 271, 591, 803
BfaI CTAG 3 cut(s) 314, 531, 950
BfoI RGCGCY 1 cut(s) 938
BglI GCCNNNNNGGC 1 cut(s) 415
BisI GCNGC 5 cut(s) 172, 398, 453, 938, 941
BlsI GCNGC 5 cut(s) 173, 399, 454, 939, 942
BmcAI AGTACT 1 cut(s) 539
Bme18I GGWCC 3 cut(s) 459, 670, 867
BmeT110I CYCGRG 2 cut(s) 413, 431
BmgT120I GGNCC 4 cut(s) 416, 459, 670, 867
BmiI GGNNCC 5 cut(s) 298, 305, 672, 868, 869
BmsI GCATC 4 cut(s) 204, 348, 693, 835
BplI GAGNNNNNCTC 2 cut(s) 869, 901
BpmI CTGGAG 3 cut(s) 151, 283, 488
Bpu10I CCTNAGC 1 cut(s) 771
BpuMI CCSGG 6 cut(s) 414, 415, 457, 572, 674, 871
BsaHI GRCGYC 2 cut(s) 318, 687
BsaJI CCNNGG 5 cut(s) 204, 322, 413, 481, 862
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 8 cut(s) 205, 293, 300, 432, 487, 517, 696, 877
Bse118I RCCGGY 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 904
Bse3DI GCAATG 1 cut(s) 91
BseBI CCWGG 4 cut(s) 238, 301, 324, 712
BseDI CCNNGG 5 cut(s) 204, 322, 413, 481, 862
BseGI GGATG 4 cut(s) 97, 195, 249, 330
BseLI CCNNNNNNNGG 8 cut(s) 205, 293, 300, 432, 487, 517, 696, 877
BseMI GCAATG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 762
BseNI ACTGG 1 cut(s) 904
BseRI GAGGAG 3 cut(s) 11, 221, 296
BseSI GKGCMC 1 cut(s) 449
BseX3I CGGCCG 1 cut(s) 450
BseXI GCAGC 1 cut(s) 924
BseYI CCCAGC 1 cut(s) 498
Bsh1236I CGCG 1 cut(s) 602
Bsh1285I CGRYCG 2 cut(s) 35, 453
BshFI GGCC 4 cut(s) 418, 452, 546, 611
BsiEI CGRYCG 2 cut(s) 35, 453
BsiHKAI GWGCWC 1 cut(s) 474
BsiHKCI CYCGRG 2 cut(s) 413, 431
BsiSI CCGG 7 cut(s) 294, 414, 457, 572, 633, 674, 871
BslFI GGGAC 3 cut(s) 305, 656, 880
BslI CCNNNNNNNGG 8 cut(s) 205, 293, 300, 432, 487, 517, 696, 877
BsmAI GTCTC 3 cut(s) 271, 591, 803
BsmBI CGTCTC 1 cut(s) 591
BsmFI GGGAC 3 cut(s) 305, 656, 880
BsnI GGCC 4 cut(s) 418, 452, 546, 611
BsoBI CYCGRG 2 cut(s) 413, 431
Bsp1286I GDGCHC 2 cut(s) 449, 474
Bsp143I GATC 1 cut(s) 574
BspACI CCGC 7 cut(s) 172, 201, 398, 443, 453, 729, 941
BspANI GGCC 4 cut(s) 418, 452, 546, 611
BspCNI CTCAG 1 cut(s) 763
BspFNI CGCG 1 cut(s) 602
BspLI GGNNCC 5 cut(s) 298, 305, 672, 868, 869
BspPI GGATC 1 cut(s) 582
BsrBI CCGCTC 1 cut(s) 443
BsrDI GCAATG 1 cut(s) 91
BsrFI RCCGGY 1 cut(s) 293
BsrI ACTGG 1 cut(s) 904
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 5 cut(s) 204, 322, 413, 481, 862
BssMI GATC 1 cut(s) 574
BssNI GRCGYC 2 cut(s) 318, 687
BssT1I CCWWGG 2 cut(s) 481, 862
Bst2UI CCWGG 4 cut(s) 238, 301, 324, 712
Bst4CI ACNGT 2 cut(s) 36, 517
Bst6I CTCTTC 1 cut(s) 801
BstACI GRCGYC 2 cut(s) 318, 687
BstC8I GCNNGC 5 cut(s) 152, 176, 222, 295, 445
BstDEI CTNAG 1 cut(s) 771
BstF5I GGATG 4 cut(s) 97, 195, 249, 330
BstFNI CGCG 1 cut(s) 602
BstH2I RGCGCY 1 cut(s) 938
BstHHI GCGC 1 cut(s) 937
BstKTI GATC 1 cut(s) 577
BstMAI GTCTC 3 cut(s) 271, 591, 803
BstMBI GATC 1 cut(s) 574
BstMCI CGRYCG 2 cut(s) 35, 453
BstMWI GCNNNNNNNGC 5 cut(s) 406, 415, 449, 608, 712
BstNI CCWGG 4 cut(s) 238, 301, 324, 712
BstSLI GKGCMC 1 cut(s) 449
BstUI CGCG 1 cut(s) 602
BstV1I GCAGC 1 cut(s) 924
BstZI CGGCCG 1 cut(s) 450
BsuRI GGCC 4 cut(s) 418, 452, 546, 611
BtsCI GGATG 4 cut(s) 97, 195, 249, 330
BtsIMutI CAGTG 1 cut(s) 513
Cac8I GCNNGC 5 cut(s) 152, 176, 222, 295, 445
CfoI GCGC 1 cut(s) 937
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 4 cut(s) 416, 459, 670, 867
Cfr9I CCCGGG 1 cut(s) 413
CseI GACGC 2 cut(s) 608, 695
Csp6I GTAC 1 cut(s) 538
CspCI CAANNNNNGTGG 2 cut(s) 502, 537
CviAII CATG 1 cut(s) 494
CviQI GTAC 1 cut(s) 538
DdeI CTNAG 1 cut(s) 771
DpnI GATC 1 cut(s) 576
DpnII GATC 1 cut(s) 574
EaeI YGGCCR 1 cut(s) 450
EagI CGGCCG 1 cut(s) 450
Eam1104I CTCTTC 1 cut(s) 801
EarI CTCTTC 1 cut(s) 801
Ecl136II GAGCTC 1 cut(s) 472
EclXI CGGCCG 1 cut(s) 450
Eco130I CCWWGG 2 cut(s) 481, 862
Eco147I AGGCCT 1 cut(s) 611
Eco24I GRGCYC 1 cut(s) 474
Eco47I GGWCC 3 cut(s) 459, 670, 867
Eco52I CGGCCG 1 cut(s) 450
Eco53kI GAGCTC 1 cut(s) 472
Eco88I CYCGRG 2 cut(s) 413, 431
EcoICRI GAGCTC 1 cut(s) 472
EcoO109I RGGNCCY 1 cut(s) 867
EcoRII CCWGG 4 cut(s) 236, 299, 322, 710
EcoT14I CCWWGG 2 cut(s) 481, 862
EcoT22I ATGCAT 1 cut(s) 828
EcoT38I GRGCYC 1 cut(s) 474
ErhI CCWWGG 2 cut(s) 481, 862
Esp3I CGTCTC 1 cut(s) 591
FaeI CATG 1 cut(s) 497
FaiI YATR 6 cut(s) 495, 591, 803, 824, 960, 968
FaqI GGGAC 3 cut(s) 305, 656, 880
FatI CATG 1 cut(s) 493
FauI CCCGC 3 cut(s) 208, 436, 722
Fnu4HI GCNGC 5 cut(s) 172, 398, 453, 938, 941
FokI GGATG 4 cut(s) 84, 182, 236, 317
FriOI GRGCYC 1 cut(s) 474
Fsp4HI GCNGC 5 cut(s) 172, 398, 453, 938, 941
FspBI CTAG 3 cut(s) 314, 531, 950
GlaI GCGC 1 cut(s) 936
GluI GCNGC 5 cut(s) 172, 398, 453, 938, 941
GsaI CCCAGC 1 cut(s) 502
GsuI CTGGAG 3 cut(s) 151, 283, 488
HaeII RGCGCY 1 cut(s) 938
HaeIII GGCC 4 cut(s) 418, 452, 546, 611
HapII CCGG 7 cut(s) 294, 414, 457, 572, 633, 674, 871
HgaI GACGC 2 cut(s) 608, 695
HhaI GCGC 1 cut(s) 937
Hin1I GRCGYC 2 cut(s) 318, 687
Hin1II CATG 1 cut(s) 497
Hin6I GCGC 1 cut(s) 935
HinP1I GCGC 1 cut(s) 935
HinfI GANTC 4 cut(s) 40, 52, 636, 776
HpaII CCGG 7 cut(s) 294, 414, 457, 572, 633, 674, 871
HphI GGTGA 4 cut(s) 355, 700, 754, 914
Hpy188I TCNGA 4 cut(s) 273, 440, 596, 781
Hpy188III TCNNGA 4 cut(s) 314, 355, 467, 683
Hpy99I CGWCG 2 cut(s) 383, 619
HpyAV CCTTC 6 cut(s) 320, 787, 811, 925, 954, 967
HpyCH4III ACNGT 2 cut(s) 36, 517
HpyCH4IV ACGT 2 cut(s) 318, 381
HpyCH4V TGCA 2 cut(s) 13, 826
HpyF10VI GCNNNNNNNGC 5 cut(s) 406, 415, 449, 608, 712
HpyF3I CTNAG 1 cut(s) 771
HpySE526I ACGT 2 cut(s) 318, 381
Hsp92I GRCGYC 2 cut(s) 318, 687
Hsp92II CATG 1 cut(s) 497
HspAI GCGC 1 cut(s) 935
KflI GGGWCCC 1 cut(s) 867
KroI GCCGGC 1 cut(s) 293
KroNI GCCGGC 1 cut(s) 295
Kzo9I GATC 1 cut(s) 574
LmnI GCTCC 5 cut(s) 302, 309, 440, 469, 676
Lsp1109I GCAGC 1 cut(s) 924
LweI GCATC 4 cut(s) 204, 348, 693, 835
MaeI CTAG 3 cut(s) 314, 531, 950
MaeII ACGT 2 cut(s) 318, 381
MalI GATC 1 cut(s) 576
MbiI CCGCTC 1 cut(s) 443
MboI GATC 1 cut(s) 574
MboII GAAGA 3 cut(s) 343, 818, 940
MhlI GDGCHC 2 cut(s) 449, 474
MluCI AATT 3 cut(s) 27, 244, 402
MluI ACGCGT 1 cut(s) 600
MlyI GAGTC 2 cut(s) 46, 770
Mph1103I ATGCAT 1 cut(s) 828
MroNI GCCGGC 1 cut(s) 293
MseI TTAA 1 cut(s) 606
MslI CAYNNNNRTG 1 cut(s) 145
MspI CCGG 7 cut(s) 294, 414, 457, 572, 633, 674, 871
MvaI CCWGG 4 cut(s) 238, 301, 324, 712
MvnI CGCG 1 cut(s) 602
MwoI GCNNNNNNNGC 5 cut(s) 406, 415, 449, 608, 712
NaeI GCCGGC 1 cut(s) 295
NciI CCSGG 6 cut(s) 414, 415, 457, 572, 674, 871
NdeII GATC 1 cut(s) 574
NgoMIV GCCGGC 1 cut(s) 293
NlaIII CATG 1 cut(s) 497
NlaIV GGNNCC 5 cut(s) 298, 305, 672, 868, 869
NmeAIII GCCGAG 1 cut(s) 229
NsiI ATGCAT 1 cut(s) 828
PceI AGGCCT 1 cut(s) 611
PdiI GCCGGC 1 cut(s) 295
PfeI GAWTC 2 cut(s) 40, 636
PflMI CCANNNNNTGG 2 cut(s) 487, 696
PfoI TCCNGGA 2 cut(s) 570, 672
PkrI GCNGC 5 cut(s) 173, 399, 454, 939, 942
PleI GAGTC 2 cut(s) 46, 770
PpsI GAGTC 2 cut(s) 46, 770
PpuMI RGGWCCY 1 cut(s) 867
Psp124BI GAGCTC 1 cut(s) 474
Psp5II RGGWCCY 1 cut(s) 867
Psp6I CCWGG 4 cut(s) 236, 299, 322, 710
PspFI CCCAGC 1 cut(s) 498
PspGI CCWGG 4 cut(s) 236, 299, 322, 710
PspN4I GGNNCC 5 cut(s) 298, 305, 672, 868, 869
PspPI GGNCC 4 cut(s) 416, 459, 670, 867
PspPPI RGGWCCY 1 cut(s) 867
RsaI GTAC 1 cut(s) 539
RsaNI GTAC 1 cut(s) 538
RseI CAYNNNNRTG 1 cut(s) 145
SacI GAGCTC 1 cut(s) 474
SaqAI TTAA 1 cut(s) 606
SatI GCNGC 5 cut(s) 172, 398, 453, 938, 941
Sau3AI GATC 1 cut(s) 574
Sau96I GGNCC 4 cut(s) 416, 459, 670, 867
ScaI AGTACT 1 cut(s) 539
SchI GAGTC 2 cut(s) 46, 770
SduI GDGCHC 2 cut(s) 449, 474
SfaNI GCATC 4 cut(s) 204, 348, 693, 835
SinI GGWCC 3 cut(s) 459, 670, 867
SmaI CCCGGG 1 cut(s) 415
SmiMI CAYNNNNRTG 1 cut(s) 145
Sse9I AATT 3 cut(s) 27, 244, 402
SseBI AGGCCT 1 cut(s) 611
SsiI CCGC 7 cut(s) 172, 201, 398, 443, 453, 729, 941
SspMI CTAG 3 cut(s) 314, 531, 950
SstI GAGCTC 1 cut(s) 474
StuI AGGCCT 1 cut(s) 611
StyI CCWWGG 2 cut(s) 481, 862
TaaI ACNGT 2 cut(s) 36, 517
TaiI ACGT 2 cut(s) 321, 384
TaqI TCGA 6 cut(s) 31, 261, 378, 558, 617, 963
TasI AATT 3 cut(s) 27, 244, 402
TatI WGTACW 1 cut(s) 537
TauI GCSGC 4 cut(s) 174, 400, 455, 943
TfiI GAWTC 2 cut(s) 40, 636
Tru1I TTAA 1 cut(s) 606
Tru9I TTAA 1 cut(s) 606
TscAI CASTG 1 cut(s) 520
TseI GCWGC 1 cut(s) 937
TspDTI ATGAA 1 cut(s) 482
TspGWI ACGGA 1 cut(s) 242
TspMI CCCGGG 1 cut(s) 413
TspRI CASTG 1 cut(s) 520
Van91I CCANNNNNTGG 2 cut(s) 487, 696
VpaK11BI GGWCC 3 cut(s) 459, 670, 867
XapI RAATTY 1 cut(s) 27
XbaI TCTAGA 1 cut(s) 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 664
XmaI CCCGGG 1 cut(s) 413
XspI CTAG 3 cut(s) 314, 531, 950
ZraI GACGTC 1 cut(s) 319
ZrmI AGTACT 1 cut(s) 539
Zsp2I ATGCAT 1 cut(s) 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.