AT5G63135

Anaphase-promoting complex subunit 15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015257
Physical Location & Seq
Reverse (-)
25324754 .. 25326479
1726 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G63135.1

Sequence Viewer

Length: 300 bp
ATGTTACAGTTTCCGACGTTGATGACCCAATTTCCGTCGTCGACGAAGACGATTCCGGCATCGTATTTGCTTCCGTTACAATGGCCTCAGCCGCAGAACGAGGAGATTCTTCTCGCCATGGAAGAAGCTGAGTTCGAAGAAAAGTGCAACGAGATCAGAAAGATGAGTCCTGCTTTACCGGTAATTGGAAAACCAGTCGTCAACAACGAACAAGAAGAGGATGATAATGAAGCAGAGGATGATGATGCAGATAATGCAGAGGAATCAGATGGTGAAGAGTTTGAGCAAGAAACCGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANAPC15

Protein Analysis

99

Amino Acids

11.23

Weight (kDa)

4.05

Isoelectric Point (pI)

86.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANAPC15 PF15243 8 - 97 1.7e-21 Anaphase-promoting complex subunit 15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63135
fragaria_vesca FvH4_5g06250
malus_domestica MD14G1172000.v1.1
prunus_persica Prupe.5G166100_v2.0.a1
pyrus_communis pycom06g14870
rosa_chinensis RchiOBHm_Chr7g0192611
rosa_multiflora Rmu_sc0004161.1_g000003
rosa_roxburghii Rroxscaffold_3G00262840
rosa_rugosa Rorug07G0002900
rosa_samantha Rh2CG350000 Rh7AG127100 Rh7CG131200 Rh7DG130700
rosa_wichuraiana Rw2G014800 Rw6G012180 Rw7G010950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 41
AciI CCGC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 185
AgeI ACCGGT 1 cut(s) 178
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
AoxI GGCC 1 cut(s) 83
AsiGI ACCGGT 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 284
AsuII TTCGAA 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 53
BbvCI CCTCAGC 1 cut(s) 87
BccI CCATC 1 cut(s) 263
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
BmsI GCATC 2 cut(s) 68, 235
BpiI GAAGAC 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 87
Bpu14I TTCGAA 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 117
BsaWI WCCGGW 2 cut(s) 178, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse118I RCCGGY 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 2 cut(s) 226, 244
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMII CTCAG 2 cut(s) 101, 120
BseNI ACTGG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 116
BshFI GGCC 1 cut(s) 85
BshTI ACCGGT 1 cut(s) 178
BsiSI CCGG 3 cut(s) 56, 179, 294
BslI CCNNNNNNNGG 1 cut(s) 185
BsnI GGCC 1 cut(s) 85
Bsp119I TTCGAA 1 cut(s) 135
Bsp143I GATC 1 cut(s) 153
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 1 cut(s) 92
BspANI GGCC 1 cut(s) 85
BspCNI CTCAG 2 cut(s) 100, 121
BspT104I TTCGAA 1 cut(s) 135
BsrFI RCCGGY 1 cut(s) 178
BsrI ACTGG 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 9
Bst6I CTCTTC 2 cut(s) 210, 270
BstAPI GCANNNNNTGC 1 cut(s) 254
BstBI TTCGAA 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 87, 129
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 226, 244
BstKTI GATC 1 cut(s) 156
BstMBI GATC 1 cut(s) 153
BstMWI GCNNNNNNNGC 2 cut(s) 91, 254
BstV2I GAAGAC 1 cut(s) 53
BsuRI GGCC 1 cut(s) 85
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 2 cut(s) 226, 244
Cfr10I RCCGGY 1 cut(s) 178
CspAI ACCGGT 1 cut(s) 178
CviAII CATG 1 cut(s) 118
CviJI RGCY 3 cut(s) 85, 91, 128
CviKI_1 RGCY 3 cut(s) 85, 91, 128
DdeI CTNAG 2 cut(s) 87, 129
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
Eam1104I CTCTTC 2 cut(s) 210, 270
EarI CTCTTC 2 cut(s) 210, 270
Eco130I CCWWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 121
FaiI YATR 1 cut(s) 119
FatI CATG 1 cut(s) 117
FblI GTMKAC 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 92
FokI GGATG 2 cut(s) 233, 251
Fsp4HI GCNGC 1 cut(s) 92
GluI GCNGC 1 cut(s) 92
HaeIII GGCC 1 cut(s) 85
HapII CCGG 3 cut(s) 56, 179, 294
Hin1II CATG 1 cut(s) 121
HincII GTYRAC 2 cut(s) 42, 202
HindII GTYRAC 2 cut(s) 42, 202
HinfI GANTC 4 cut(s) 52, 106, 166, 263
HpaII CCGG 3 cut(s) 56, 179, 294
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 2 cut(s) 42, 202
Hpy188I TCNGA 3 cut(s) 15, 158, 268
Hpy8I GTNNAC 2 cut(s) 42, 202
Hpy99I CGWCG 4 cut(s) 19, 40, 43, 46
HpyCH4III ACNGT 1 cut(s) 9
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 3 cut(s) 147, 248, 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 254
HpyF3I CTNAG 2 cut(s) 87, 129
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 1 cut(s) 121
Kzo9I GATC 1 cut(s) 153
LpnPI CCDG 4 cut(s) 69, 183, 192, 207
LweI GCATC 2 cut(s) 68, 235
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 2 cut(s) 3, 75
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 6 cut(s) 58, 101, 134, 149, 227, 287
MluCI AATT 2 cut(s) 29, 183
MlyI GAGTC 1 cut(s) 175
MmeI TCCRAC 1 cut(s) 38
MnlI CCTC 5 cut(s) 94, 96, 211, 229, 253
MspI CCGG 3 cut(s) 56, 179, 294
MwoI GCNNNNNNNGC 2 cut(s) 91, 254
NcoI CCATGG 1 cut(s) 117
NdeII GATC 1 cut(s) 153
NlaIII CATG 1 cut(s) 121
NspV TTCGAA 1 cut(s) 135
PcsI WCGNNNNNNNCGW 2 cut(s) 47, 204
PfeI GAWTC 3 cut(s) 52, 106, 263
PinAI ACCGGT 1 cut(s) 178
PkrI GCNGC 1 cut(s) 93
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
SalI GTCGAC 1 cut(s) 40
SatI GCNGC 1 cut(s) 92
Sau3AI GATC 1 cut(s) 153
SchI GAGTC 1 cut(s) 175
SetI ASST 2 cut(s) 20, 130
SfaNI GCATC 2 cut(s) 68, 235
SfuI TTCGAA 1 cut(s) 135
SgeI CNNG 9 cut(s) 68, 112, 125, 130, 163, 182, 191, 206, 224
SgrDI CGTCGACG 1 cut(s) 40
Sse9I AATT 2 cut(s) 29, 183
SsiI CCGC 1 cut(s) 92
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 9
TaiI ACGT 1 cut(s) 20
TaqI TCGA 2 cut(s) 41, 135
TasI AATT 2 cut(s) 29, 183
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 3 cut(s) 52, 106, 263
TspDTI ATGAA 1 cut(s) 243
TspGWI ACGGA 2 cut(s) 24, 63
XmiI GTMKAC 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.