Rw6G012180

Anaphase-promoting complex subunit 15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0015257
Physical Location & Seq
Reverse (-)
22182394 .. 22182657
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G012180.1

Sequence Viewer

Length: 234 bp
ATGAAACAGTACCCGTGGTCAACCAGGACAATTCCGGCTGCCATCTCAATGGCCCCAATCCCACAACGAAGAGCTCCTCCTCGCCATGGAGGAGGTCAATTACGACGAAAAATTATGATTGGAAAACTGACTGTTGATGTTGATAAAGAAGACTATGATAAGGATGCTGACGATGATGATGTGGACAATGCAGAGGATTCTGAGGGCGAAGAGTTTGAGCAAGAAACCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANAPC15

Protein Analysis

77

Amino Acids

8.72

Weight (kDa)

4.53

Isoelectric Point (pI)

56.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63135
fragaria_vesca FvH4_5g06250
malus_domestica MD14G1172000.v1.1
prunus_persica Prupe.5G166100_v2.0.a1
pyrus_communis pycom06g14870
rosa_chinensis RchiOBHm_Chr7g0192611
rosa_multiflora Rmu_sc0004161.1_g000003
rosa_roxburghii Rroxscaffold_3G00262840
rosa_rugosa Rorug07G0002900
rosa_samantha Rh2CG350000 Rh7AG127100 Rh7CG131200 Rh7DG130700
rosa_wichuraiana Rw2G014800 Rw6G012180 Rw7G010950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 86
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 76
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 25
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 14, 85
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 228
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 2 cut(s) 14, 85
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 228
BseRI GAGGAG 3 cut(s) 66, 69, 105
BseXI GCAGC 1 cut(s) 25
BshFI GGCC 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 76
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 86
BsnI GGCC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 76
Bsp19I CCATGG 1 cut(s) 85
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 54
BspQI GCTCTTC 1 cut(s) 64
BsrI ACTGG 1 cut(s) 228
BssECI CCNNGG 2 cut(s) 14, 85
BssT1I CCWWGG 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 2 cut(s) 9, 133
Bst6I CTCTTC 2 cut(s) 64, 204
BstDEI CTNAG 1 cut(s) 201
BstDSI CCRYGG 2 cut(s) 14, 85
BstF5I GGATG 1 cut(s) 169
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 156
BstXI CCANNNNNNTGG 1 cut(s) 49
BsuRI GGCC 1 cut(s) 53
BtgI CCRYGG 2 cut(s) 14, 85
BtsCI GGATG 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 10
CviAII CATG 1 cut(s) 86
CviJI RGCY 3 cut(s) 38, 53, 74
CviKI_1 RGCY 3 cut(s) 38, 53, 74
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 1 cut(s) 201
Eam1104I CTCTTC 2 cut(s) 64, 204
EarI CTCTTC 2 cut(s) 64, 204
Ecl136II GAGCTC 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 76
Eco53kI GAGCTC 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 1 cut(s) 89
FaiI YATR 3 cut(s) 87, 116, 156
FatI CATG 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 1 cut(s) 53
HapII CCGG 1 cut(s) 35
Hin1II CATG 1 cut(s) 89
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 1 cut(s) 197
HpaII CCGG 1 cut(s) 35
Hpy166II GTNNAC 2 cut(s) 21, 184
Hpy188I TCNGA 1 cut(s) 202
Hpy8I GTNNAC 2 cut(s) 21, 184
Hpy99I CGWCG 1 cut(s) 108
HpyCH4III ACNGT 2 cut(s) 9, 133
HpyCH4V TGCA 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 201
Hsp92II CATG 1 cut(s) 89
LguI GCTCTTC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 3 cut(s) 10, 37, 48
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 154
MboII GAAGA 3 cut(s) 81, 161, 221
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 3 cut(s) 30, 98, 111
MnlI CCTC 6 cut(s) 83, 86, 87, 90, 187, 196
MslI CAYNNNNRTG 1 cut(s) 47
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 25
MvaI CCWGG 1 cut(s) 25
NcoI CCATGG 1 cut(s) 85
NlaIII CATG 1 cut(s) 89
NlaIV GGNNCC 1 cut(s) 54
PciSI GCTCTTC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 1 cut(s) 40
Psp124BI GAGCTC 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 52
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 47
SacI GAGCTC 1 cut(s) 76
SapI GCTCTTC 1 cut(s) 64
SatI GCNGC 1 cut(s) 39
Sau96I GGNCC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 25
SduI GDGCHC 1 cut(s) 76
SetI ASST 2 cut(s) 76, 97
SfaNI GCATC 1 cut(s) 154
SgeI CNNG 7 cut(s) 25, 27, 36, 37, 47, 93, 98
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 3 cut(s) 30, 98, 111
SstI GAGCTC 1 cut(s) 76
StyD4I CCNGG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 2 cut(s) 9, 133
TasI AATT 3 cut(s) 30, 98, 111
TfiI GAWTC 1 cut(s) 197
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.