Rorug07G0002900

Anaphase-promoting complex subunit 15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0015257
Physical Location & Seq
Forward (+)
294845 .. 295840
996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0002900.1

Sequence Viewer

Length: 687 bp
ATGATTCCGAGTTTCATTTCCATGGATCAAAGCAAGGCAGCCGGAGCTGATCATCAGGCCAAACGTACTTACGAGGACTTTGAACCCTTCTGCAAATGGCATAACCGCGACAATGTTGTTGAGGTCCATATTCAAGGTTTCAGAAAGGAACACCTAAGTGTCCGTACCACTCAGACGGGGATGCTTACAATCCATGGAGAACGTCCATTGGACCAAACTAAATCTACATGGAGCCGTTTCCACAAAGAAATTAAGCTTCCAAACAACTGCGACACAAATAGAGTTGCTGCAAAGTTTGCTGCAGGAGTTCTTACAATAACAATGCCTCCCAAAGTTGCACCACCTCAACCTCAATCTCCAGAAGATCAGAAACAACAGCTTAGCAATCATGAAAAGTTACCAGAACCAAGCAACAATGATACTCAAACAAATAATGATAAAGCGATAGCTAAACTCATTAAACAAAATCCGGACAAGCAGGCAACCACCGATGAAAATGCTGCATTGCTTGATGAAGAGGTTAAGCCAGGAAGCTGCTGCGAATTCGGGCAAAAGAGTACTTTAGCTTCGAAGAATTGGAAGGTGAAACTCGTGTTGGTGGTTGCCGTGGTGGTCTCTTTTGGTTTCGGGGCATATATCAGATACAAACACGGCCATTACTCATATAGCTGGGAGCAGACAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANAPC15

Protein Analysis

228

Amino Acids

25.76

Weight (kDa)

8.27

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 39 - 116 2e-12 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63135
fragaria_vesca FvH4_5g06250
malus_domestica MD14G1172000.v1.1
prunus_persica Prupe.5G166100_v2.0.a1
pyrus_communis pycom06g14870
rosa_chinensis RchiOBHm_Chr7g0192611
rosa_multiflora Rmu_sc0004161.1_g000003
rosa_roxburghii Rroxscaffold_3G00262840
rosa_rugosa Rorug07G0002900
rosa_samantha Rh2CG350000 Rh7AG127100 Rh7CG131200 Rh7DG130700
rosa_wichuraiana Rw2G014800 Rw6G012180 Rw7G010950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 108
AccIII TCCGGA 1 cut(s) 469
AciI CCGC 1 cut(s) 106
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 652
AcsI RAATTY 1 cut(s) 542
AfaI GTAC 3 cut(s) 67, 166, 559
AgsI TTSAA 2 cut(s) 83, 134
AjnI CCWGG 1 cut(s) 526
AjuI GAANNNNNNNTTGG 2 cut(s) 578, 610
AleI CACNNNNGTG 1 cut(s) 156
AluBI AGCT 7 cut(s) 47, 256, 379, 449, 534, 566, 669
AluI AGCT 7 cut(s) 47, 256, 379, 449, 534, 566, 669
Alw26I GTCTC 1 cut(s) 619
AlwI GGATC 1 cut(s) 33
Aor13HI TCCGGA 1 cut(s) 469
AoxI GGCC 2 cut(s) 57, 652
ApeKI GCWGC 6 cut(s) 38, 287, 299, 500, 534, 537
ApoI RAATTY 1 cut(s) 542
AspS9I GGNCC 2 cut(s) 124, 211
AsuHPI GGTGA 1 cut(s) 595
AsuII TTCGAA 1 cut(s) 569
AvaII GGWCC 2 cut(s) 124, 211
BarI GAAGNNNNNNTAC 2 cut(s) 550, 582
BauI CACGAG 1 cut(s) 590
BbvI GCAGC 6 cut(s) 50, 274, 286, 487, 521, 524
BceAI ACGGC 3 cut(s) 219, 590, 667
BcgI CGANNNNNNTGC 2 cut(s) 479, 513
BciT130I CCWGG 1 cut(s) 528
BclI TGATCA 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 619
BfaI CTAG 1 cut(s) 685
BfmI CTRYAG 1 cut(s) 300
BisI GCNGC 6 cut(s) 39, 288, 300, 501, 535, 538
BlpI GCTNAGC 1 cut(s) 380
BlsI GCNGC 6 cut(s) 40, 289, 301, 502, 536, 539
BmcAI AGTACT 1 cut(s) 559
Bme1390I CCNGG 1 cut(s) 528
Bme18I GGWCC 2 cut(s) 124, 211
BmgT120I GGNCC 2 cut(s) 124, 211
BmiI GGNNCC 1 cut(s) 233
BmrFI CCNGG 1 cut(s) 528
BmsI GCATC 1 cut(s) 171
BpmI CTGGAG 1 cut(s) 342
Bpu1102I GCTNAGC 1 cut(s) 380
Bpu14I TTCGAA 1 cut(s) 569
BsaI GGTCTC 1 cut(s) 619
BsaJI CCNNGG 3 cut(s) 21, 193, 606
BsaWI WCCGGW 1 cut(s) 469
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bse3DI GCAATG 1 cut(s) 503
BseAI TCCGGA 1 cut(s) 469
BseBI CCWGG 1 cut(s) 528
BseDI CCNNGG 3 cut(s) 21, 193, 606
BseGI GGATG 1 cut(s) 186
BseMI GCAATG 1 cut(s) 503
BseMII CTCAG 1 cut(s) 185
BseXI GCAGC 6 cut(s) 50, 274, 286, 487, 521, 524
BseYI CCCAGC 1 cut(s) 669
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 2 cut(s) 59, 654
BsiSI CCGG 2 cut(s) 42, 470
BsmAI GTCTC 1 cut(s) 619
BsnI GGCC 2 cut(s) 59, 654
Bso31I GGTCTC 1 cut(s) 619
Bsp119I TTCGAA 1 cut(s) 569
Bsp13I TCCGGA 1 cut(s) 469
Bsp143I GATC 3 cut(s) 25, 49, 364
Bsp1720I GCTNAGC 1 cut(s) 380
Bsp19I CCATGG 2 cut(s) 21, 193
BspACI CCGC 1 cut(s) 106
BspANI GGCC 2 cut(s) 59, 654
BspCNI CTCAG 1 cut(s) 184
BspEI TCCGGA 1 cut(s) 469
BspFNI CGCG 1 cut(s) 108
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 1 cut(s) 233
BspMAI CTGCAG 1 cut(s) 304
BspPI GGATC 1 cut(s) 33
BspT104I TTCGAA 1 cut(s) 569
BspTNI GGTCTC 1 cut(s) 619
BsrDI GCAATG 1 cut(s) 503
BssECI CCNNGG 3 cut(s) 21, 193, 606
BssMI GATC 3 cut(s) 25, 49, 364
BssSI CACGAG 1 cut(s) 590
BssT1I CCWWGG 2 cut(s) 21, 193
Bst2BI CACGAG 1 cut(s) 590
Bst2UI CCWGG 1 cut(s) 528
Bst6I CTCTTC 1 cut(s) 510
BstAPI GCANNNNNTGC 1 cut(s) 296
BstBI TTCGAA 1 cut(s) 569
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 3 cut(s) 155, 171, 380
BstDSI CCRYGG 3 cut(s) 21, 193, 606
BstF5I GGATG 1 cut(s) 186
BstFNI CGCG 1 cut(s) 108
BstKTI GATC 3 cut(s) 28, 52, 367
BstMAI GTCTC 1 cut(s) 619
BstMBI GATC 3 cut(s) 25, 49, 364
BstMWI GCNNNNNNNGC 2 cut(s) 44, 296
BstNI CCWGG 1 cut(s) 528
BstSCI CCNGG 1 cut(s) 526
BstSFI CTRYAG 1 cut(s) 300
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 6 cut(s) 50, 274, 286, 487, 521, 524
BsuRI GGCC 2 cut(s) 59, 654
BtgI CCRYGG 3 cut(s) 21, 193, 606
BtsCI GGATG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 480
CciI TCATGA 1 cut(s) 388
Cfr13I GGNCC 2 cut(s) 124, 211
Csp6I GTAC 3 cut(s) 66, 165, 558
CviAII CATG 4 cut(s) 22, 194, 228, 389
CviQI GTAC 3 cut(s) 66, 165, 558
DdeI CTNAG 3 cut(s) 155, 171, 380
DpnI GATC 3 cut(s) 27, 51, 366
DpnII GATC 3 cut(s) 25, 49, 364
EaeI YGGCCR 1 cut(s) 652
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
Eco130I CCWWGG 2 cut(s) 21, 193
Eco31I GGTCTC 1 cut(s) 619
Eco47I GGWCC 2 cut(s) 124, 211
EcoRI GAATTC 1 cut(s) 542
EcoRII CCWGG 1 cut(s) 526
EcoT14I CCWWGG 2 cut(s) 21, 193
ErhI CCWWGG 2 cut(s) 21, 193
FaeI CATG 4 cut(s) 25, 197, 231, 392
FatI CATG 4 cut(s) 21, 193, 227, 388
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 6 cut(s) 39, 288, 300, 501, 535, 538
FokI GGATG 1 cut(s) 193
Fsp4HI GCNGC 6 cut(s) 39, 288, 300, 501, 535, 538
FspBI CTAG 1 cut(s) 685
GluI GCNGC 6 cut(s) 39, 288, 300, 501, 535, 538
GsaI CCCAGC 1 cut(s) 673
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 2 cut(s) 59, 654
HapII CCGG 2 cut(s) 42, 470
Hin1II CATG 4 cut(s) 25, 197, 231, 392
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 1 cut(s) 4
HpaII CCGG 2 cut(s) 42, 470
HphI GGTGA 1 cut(s) 595
Hpy188I TCNGA 5 cut(s) 9, 143, 174, 369, 641
Hpy188III TCNNGA 3 cut(s) 359, 389, 470
HpyAV CCTTC 2 cut(s) 97, 574
HpyCH4IV ACGT 2 cut(s) 64, 202
HpyCH4V TGCA 5 cut(s) 93, 290, 302, 338, 503
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 296
HpyF3I CTNAG 3 cut(s) 155, 171, 380
HpySE526I ACGT 2 cut(s) 64, 202
Hsp92II CATG 4 cut(s) 25, 197, 231, 392
Kpn2I TCCGGA 1 cut(s) 469
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 3 cut(s) 25, 49, 364
LmnI GCTCC 3 cut(s) 44, 231, 673
Lsp1109I GCAGC 6 cut(s) 50, 274, 286, 487, 521, 524
LweI GCATC 1 cut(s) 171
MaeI CTAG 1 cut(s) 685
MaeII ACGT 2 cut(s) 64, 202
MaeIII GTNAC 1 cut(s) 396
MalI GATC 3 cut(s) 27, 51, 366
MboI GATC 3 cut(s) 25, 49, 364
MboII GAAGA 3 cut(s) 374, 527, 583
MluCI AATT 3 cut(s) 249, 542, 574
MnlI CCTC 6 cut(s) 67, 115, 336, 354, 360, 511
MroI TCCGGA 1 cut(s) 469
MseI TTAA 3 cut(s) 252, 459, 522
MslI CAYNNNNRTG 2 cut(s) 20, 156
MspI CCGG 2 cut(s) 42, 470
MspR9I CCNGG 1 cut(s) 528
MvaI CCWGG 1 cut(s) 528
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 44, 296
NcoI CCATGG 2 cut(s) 21, 193
NdeII GATC 3 cut(s) 25, 49, 364
NlaIII CATG 4 cut(s) 25, 197, 231, 392
NlaIV GGNNCC 1 cut(s) 233
NspV TTCGAA 1 cut(s) 569
OliI CACNNNNGTG 1 cut(s) 156
PagI TCATGA 1 cut(s) 388
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 6 cut(s) 40, 289, 301, 502, 536, 539
Psp6I CCWGG 1 cut(s) 526
PspFI CCCAGC 1 cut(s) 669
PspGI CCWGG 1 cut(s) 526
PspN4I GGNNCC 1 cut(s) 233
PspPI GGNCC 2 cut(s) 124, 211
PstI CTGCAG 1 cut(s) 304
RsaI GTAC 3 cut(s) 67, 166, 559
RsaNI GTAC 3 cut(s) 66, 165, 558
RseI CAYNNNNRTG 2 cut(s) 20, 156
SaqAI TTAA 3 cut(s) 252, 459, 522
SatI GCNGC 6 cut(s) 39, 288, 300, 501, 535, 538
Sau3AI GATC 3 cut(s) 25, 49, 364
Sau96I GGNCC 2 cut(s) 124, 211
ScaI AGTACT 1 cut(s) 559
ScrFI CCNGG 1 cut(s) 528
SfaNI GCATC 1 cut(s) 171
SfcI CTRYAG 1 cut(s) 300
SfuI TTCGAA 1 cut(s) 569
SinI GGWCC 2 cut(s) 124, 211
SmiMI CAYNNNNRTG 2 cut(s) 20, 156
Sse9I AATT 3 cut(s) 249, 542, 574
SsiI CCGC 1 cut(s) 106
SspMI CTAG 1 cut(s) 685
StyD4I CCNGG 1 cut(s) 526
StyI CCWWGG 2 cut(s) 21, 193
TaiI ACGT 2 cut(s) 67, 205
TaqI TCGA 1 cut(s) 569
TasI AATT 3 cut(s) 249, 542, 574
TatI WGTACW 1 cut(s) 557
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 3 cut(s) 252, 459, 522
Tru9I TTAA 3 cut(s) 252, 459, 522
TseI GCWGC 6 cut(s) 38, 287, 299, 500, 534, 537
TspDTI ATGAA 4 cut(s) 4, 405, 507, 528
TspGWI ACGGA 1 cut(s) 152
VpaK11BI GGWCC 2 cut(s) 124, 211
XapI RAATTY 1 cut(s) 542
XspI CTAG 1 cut(s) 685
ZrmI AGTACT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.