Rw2G014800

Anaphase-promoting complex subunit 15

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
16879945 .. 16880219
275 bp
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UTR
Exon/CDS
Intron
Rw2G014800.1

Sequence Viewer

Length: 228 bp
ATGAAACAGTACCCGTGGTCAACCAGGACAATTCCGACGTCGTTTTTGCTGCCTTCTCAATGGCCCCAATCCCACAACGAAGAGCTCCTCCTCGCAATGGAGGAGATTATGATTGGAAAACTGACTGTTGATGTTGATAAAGAAGACTATGATAAGGATGCTGACGATGATGATGTGGACAATGCAGAGGATTCTGAGGGTGAAGAGTTTGAGCAGGAAACAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.67

Weight (kDa)

4.05

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63135
fragaria_vesca FvH4_5g06250
malus_domestica MD14G1172000.v1.1
prunus_persica Prupe.5G166100_v2.0.a1
pyrus_communis pycom06g14870
rosa_chinensis RchiOBHm_Chr7g0192611
rosa_multiflora Rmu_sc0004161.1_g000003
rosa_roxburghii Rroxscaffold_3G00262840
rosa_rugosa Rorug07G0002900
rosa_samantha Rh2CG350000 Rh7AG127100 Rh7CG131200 Rh7DG130700
rosa_wichuraiana Rw2G014800 Rw6G012180 Rw7G010950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 41
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 97
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
Alw21I GWGCWC 1 cut(s) 87
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 49
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
AspS9I GGNCC 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 212
BanII GRGCYC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 25
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 65
BmrFI CCNGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 14
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 102
BseMII CTCAG 1 cut(s) 186
BseRI GAGGAG 3 cut(s) 77, 80, 116
BseXI GCAGC 1 cut(s) 36
BshFI GGCC 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 97
BsnI GGCC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 87
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 65
BspQI GCTCTTC 1 cut(s) 75
BsrDI GCAATG 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 14
BssNI GRCGYC 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 2 cut(s) 9, 127
Bst6I CTCTTC 2 cut(s) 75, 198
BstACI GRCGYC 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 195
BstDSI CCRYGG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 163
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 36
BstV2I GAAGAC 1 cut(s) 150
BsuRI GGCC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 14
BtsCI GGATG 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 63
Csp6I GTAC 1 cut(s) 10
CviJI RGCY 2 cut(s) 64, 85
CviKI_1 RGCY 2 cut(s) 64, 85
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 1 cut(s) 195
Eam1104I CTCTTC 2 cut(s) 75, 198
EarI CTCTTC 2 cut(s) 75, 198
Ecl136II GAGCTC 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 87
Eco53kI GAGCTC 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 87
FaiI YATR 2 cut(s) 110, 150
Fnu4HI GCNGC 1 cut(s) 50
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 50
GluI GCNGC 1 cut(s) 50
HaeIII GGCC 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 38
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 1 cut(s) 191
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 2 cut(s) 21, 178
Hpy188I TCNGA 2 cut(s) 36, 196
Hpy8I GTNNAC 2 cut(s) 21, 178
Hpy99I CGWCG 2 cut(s) 40, 43
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 2 cut(s) 9, 127
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 1 cut(s) 185
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 1 cut(s) 38
Hsp92I GRCGYC 1 cut(s) 38
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 90
LpnPI CCDG 4 cut(s) 10, 37, 200, 207
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 1 cut(s) 148
MaeII ACGT 1 cut(s) 38
MboII GAAGA 3 cut(s) 92, 155, 215
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 1 cut(s) 30
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 5 cut(s) 94, 98, 101, 181, 190
MspR9I CCNGG 1 cut(s) 25
MvaI CCWGG 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 1 cut(s) 51
Psp124BI GAGCTC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 65
PspPI GGNCC 1 cut(s) 63
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SacI GAGCTC 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 75
SatI GCNGC 1 cut(s) 50
Sau96I GGNCC 1 cut(s) 63
ScrFI CCNGG 1 cut(s) 25
SduI GDGCHC 1 cut(s) 87
SetI ASST 3 cut(s) 41, 87, 226
SfaNI GCATC 1 cut(s) 148
SgeI CNNG 5 cut(s) 25, 27, 36, 37, 104
Sse9I AATT 1 cut(s) 30
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 23
TaaI ACNGT 2 cut(s) 9, 127
TaiI ACGT 1 cut(s) 41
TasI AATT 1 cut(s) 30
TfiI GAWTC 1 cut(s) 191
TseI GCWGC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 17
ZraI GACGTC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.