FvH4_5g06250

Anaphase-promoting complex subunit 15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015257
Physical Location & Seq
Reverse (-)
3686568 .. 3688396
1829 bp
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UTR
Exon/CDS
Intron
FvH4_5g06250.t1

Sequence Viewer

Length: 300 bp
ATGTTACAATTTCCGGGTTTCATGAAACAGTACCCATGGTCGACCAGGACAATTCCGACGTCGTTTCTGCTGCCGTCTCAATGGCCCCAACCCCACAGCGAAGAGCTCCTCCTCGCCATGGAGGAAGCCGATTACGACGAAAAGTGTAATGAAATCCGAAAGAGCCACAGCCACCGGATTATGATTGGGAAACCAACTGTTGATGTTGATAAGGAAGACTATGATAATGATGCTGACGATGACGACGTGGACAATGCAGAGGATTCTGAGGGCGAAGAGTTTGAGCAGGAAACTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANAPC15

Protein Analysis

100

Amino Acids

11.51

Weight (kDa)

4.12

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANAPC15 PF15243 8 - 97 4.5e-17 Anaphase-promoting complex subunit 15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63135
fragaria_vesca FvH4_5g06250
malus_domestica MD14G1172000.v1.1
prunus_persica Prupe.5G166100_v2.0.a1
pyrus_communis pycom06g14870
rosa_chinensis RchiOBHm_Chr7g0192611
rosa_multiflora Rmu_sc0004161.1_g000003
rosa_roxburghii Rroxscaffold_3G00262840
rosa_rugosa Rorug07G0002900
rosa_samantha Rh2CG350000 Rh7AG127100 Rh7CG131200 Rh7DG130700
rosa_wichuraiana Rw2G014800 Rw6G012180 Rw7G010950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 62
AccI GTMKAC 1 cut(s) 41
AcyI GRCGYC 1 cut(s) 59
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 118
AjiI CACGTC 1 cut(s) 247
AjnI CCWGG 1 cut(s) 44
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 81
AoxI GGCC 1 cut(s) 83
ApeKI GCWGC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 84
AsuC2I CCSGG 1 cut(s) 15
BanII GRGCYC 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 57
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 46
BcnI CCSGG 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 81
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
Bme1390I CCNGG 2 cut(s) 15, 46
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 2 cut(s) 15, 46
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 35, 117
BsaWI WCCGGW 1 cut(s) 174
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 298
BseBI CCWGG 1 cut(s) 46
BseDI CCNNGG 2 cut(s) 35, 117
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 2 cut(s) 98, 101
BseXI GCAGC 1 cut(s) 57
BshFI GGCC 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 108
BsiSI CCGG 2 cut(s) 14, 175
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 81
BsmBI CGTCTC 1 cut(s) 81
BsnI GGCC 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 108
Bsp19I CCATGG 2 cut(s) 35, 117
BspANI GGCC 1 cut(s) 85
BspCNI CTCAG 1 cut(s) 259
BspHI TCATGA 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 86
BspQI GCTCTTC 1 cut(s) 96
BsrI ACTGG 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 35, 117
BssNI GRCGYC 1 cut(s) 59
BssT1I CCWWGG 2 cut(s) 35, 117
Bst2UI CCWGG 1 cut(s) 46
Bst4CI ACNGT 2 cut(s) 30, 199
Bst6I CTCTTC 2 cut(s) 96, 270
BstACI GRCGYC 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 267
BstDSI CCRYGG 2 cut(s) 35, 117
BstMAI GTCTC 1 cut(s) 81
BstNI CCWGG 1 cut(s) 46
BstSCI CCNGG 2 cut(s) 13, 44
BstV1I GCAGC 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 222
BsuRI GGCC 1 cut(s) 85
BtgI CCRYGG 2 cut(s) 35, 117
BtrI CACGTC 1 cut(s) 247
CciI TCATGA 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 31
CviAII CATG 3 cut(s) 22, 36, 118
CviJI RGCY 5 cut(s) 85, 106, 128, 165, 171
CviKI_1 RGCY 5 cut(s) 85, 106, 128, 165, 171
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 267
Eam1104I CTCTTC 2 cut(s) 96, 270
EarI CTCTTC 2 cut(s) 96, 270
Ecl136II GAGCTC 1 cut(s) 106
Eco130I CCWWGG 2 cut(s) 35, 117
Eco24I GRGCYC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 106
EcoICRI GAGCTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 44
EcoT14I CCWWGG 2 cut(s) 35, 117
EcoT38I GRGCYC 1 cut(s) 108
ErhI CCWWGG 2 cut(s) 35, 117
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 3 cut(s) 25, 39, 121
FaiI YATR 5 cut(s) 23, 37, 119, 182, 222
FatI CATG 3 cut(s) 21, 35, 117
FblI GTMKAC 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 71
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 71
HaeIII GGCC 1 cut(s) 85
HapII CCGG 2 cut(s) 14, 175
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 3 cut(s) 25, 39, 121
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 1 cut(s) 263
HpaII CCGG 2 cut(s) 14, 175
Hpy166II GTNNAC 2 cut(s) 42, 250
Hpy188I TCNGA 3 cut(s) 57, 158, 268
Hpy188III TCNNGA 1 cut(s) 22
Hpy8I GTNNAC 2 cut(s) 42, 250
Hpy99I CGWCG 4 cut(s) 61, 64, 140, 248
HpyCH4III ACNGT 2 cut(s) 30, 199
HpyCH4IV ACGT 2 cut(s) 59, 246
HpyCH4V TGCA 1 cut(s) 257
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 2 cut(s) 59, 246
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 3 cut(s) 25, 39, 121
LguI GCTCTTC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 6 cut(s) 27, 31, 58, 188, 272, 279
Lsp1109I GCAGC 1 cut(s) 57
LweI GCATC 1 cut(s) 220
MaeII ACGT 2 cut(s) 59, 246
MaeIII GTNAC 1 cut(s) 3
MboII GAAGA 3 cut(s) 113, 227, 287
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 2 cut(s) 8, 51
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 5 cut(s) 115, 119, 122, 253, 262
MspI CCGG 2 cut(s) 14, 175
MspR9I CCNGG 2 cut(s) 15, 46
MvaI CCWGG 1 cut(s) 46
NciI CCSGG 1 cut(s) 15
NcoI CCATGG 2 cut(s) 35, 117
NlaIII CATG 3 cut(s) 25, 39, 121
NlaIV GGNNCC 1 cut(s) 86
PagI TCATGA 1 cut(s) 21
PciSI GCTCTTC 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 1 cut(s) 72
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 44
PspGI CCWGG 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 84
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SacI GAGCTC 1 cut(s) 108
SalI GTCGAC 1 cut(s) 40
SapI GCTCTTC 1 cut(s) 96
SatI GCNGC 1 cut(s) 71
Sau96I GGNCC 1 cut(s) 84
ScrFI CCNGG 2 cut(s) 15, 46
SduI GDGCHC 1 cut(s) 108
SetI ASST 3 cut(s) 62, 108, 249
SfaNI GCATC 1 cut(s) 220
Sse9I AATT 2 cut(s) 8, 51
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 13, 44
StyI CCWWGG 2 cut(s) 35, 117
TaaI ACNGT 2 cut(s) 30, 199
TaiI ACGT 2 cut(s) 62, 249
TaqI TCGA 1 cut(s) 41
TasI AATT 2 cut(s) 8, 51
TfiI GAWTC 1 cut(s) 263
TseI GCWGC 1 cut(s) 70
TspDTI ATGAA 3 cut(s) 10, 38, 165
XmiI GTMKAC 1 cut(s) 41
ZraI GACGTC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.