Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013184

Physical Location & Seq

Genomic Coordinates Forward (+)

25487927 .. 25489600

Gene Structure 1674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G63670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGGAAGCGCACCAGCTCAGATTCCGACTAGCTTCGGCCATGAGCTTAGGGCTTGTCTTCGTTGCCGACTCGTCAAGACCTATGACCAGTTTAGAGACGCTGGTTGCGAGAATTGTCCTTTCTTCAAGATGGAAGAGGATCATGAGCGTATCGTGGAGGTCACTACCCCTAATTTCAATGGTATAATCTCTGTGATGGATCCAAGTAGAAGCTGGGCGGCTAGGTGGTTAAGAATCGGGAAGTTTGCTCCTGGTTGCTACACACTTGCTGTCTCAGAGCCACTCCCTGAGGAAATGCAGCACTTATGCCAAGAGGAGCGTGTACAATATGTTCTGCCGAAACGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032044 GO:0032784 GO:0032991 GO:0034243 GO:0034641 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spt4

Protein Analysis

116

Amino Acids

13.37

Weight (kDa)

6.29

Isoelectric Point (pI)

57.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spt4	PF06093	16 - 79	7.8e-26	Spt4/RpoE2 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08565 AT5G08565 AT5G63670
fragaria_vesca	FvH4_4g10630
malus_domestica	MD04G1047800.v1.1 MD07G1114100.v1.1 MD09G1278200.v1.1 MD17G1271200.v1.1
prunus_persica	Prupe.3G015100_v2.0.a1
pyrus_communis	pycom04g04180
rosa_chinensis	RchiOBHm_Chr4g0406241
rosa_laevigata	RLG00000008786
rosa_multiflora	Rmu_ssc0000456.1_g000008
rosa_roxburghii	Rroxscaffold_5G00350980
rosa_rugosa	Rorug04G0067100
rosa_samantha	Rh4BG134100
rosa_wichuraiana	Rw4G011070 Rw4G011210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	3 cut(s)	147, 194, 207
AcoI	YGGCCR	1 cut(s)	37
AfaI	GTAC	1 cut(s)	324
AgsI	TTSAA	2 cut(s)	127, 178
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	4 cut(s)	17, 33, 46, 213
AluI	AGCT	4 cut(s)	17, 33, 46, 213
Alw26I	GTCTC	2 cut(s)	90, 277
AlwI	GGATC	3 cut(s)	147, 194, 207
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	11
AxyI	CCTNAGG	1 cut(s)	288
BamHI	GGATCC	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	2 cut(s)	124, 190
BciT130I	CCWGG	1 cut(s)	252
BcoDI	GTCTC	2 cut(s)	90, 277
BfaI	CTAG	2 cut(s)	30, 222
BisI	GCNGC	2 cut(s)	219, 299
BlsI	GCNGC	2 cut(s)	220, 300
Bme1390I	CCNGG	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	88
Bse21I	CCTNAGG	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	252
BseMII	CTCAG	3 cut(s)	32, 279, 288
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	310
BseYI	CCCAGC	1 cut(s)	213
BshFI	GGCC	1 cut(s)	39
BsmAI	GTCTC	2 cut(s)	90, 277
BsmBI	CGTCTC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	39
Bsp1407I	TGTACA	1 cut(s)	322
Bsp143I	GATC	2 cut(s)	139, 199
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	3 cut(s)	31, 280, 287
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	201
BspPI	GGATC	3 cut(s)	147, 194, 207
BsrGI	TGTACA	1 cut(s)	322
BsrI	ACTGG	1 cut(s)	88
BssMI	GATC	2 cut(s)	139, 199
Bst2UI	CCWGG	1 cut(s)	252
Bst6I	CTCTTC	1 cut(s)	129
BstAUI	TGTACA	1 cut(s)	322
BstDEI	CTNAG	4 cut(s)	18, 47, 274, 288
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	2 cut(s)	142, 202
BstMAI	GTCTC	2 cut(s)	90, 277
BstMBI	GATC	2 cut(s)	139, 199
BstNI	CCWGG	1 cut(s)	252
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	250
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
Bsu36I	CCTNAGG	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	39
CciI	TCATGA	1 cut(s)	142
CfoI	GCGC	1 cut(s)	11
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	3 cut(s)	41, 143, 346
CviJI	RGCY	8 cut(s)	17, 33, 39, 46, 53, 213, 221, 280
CviKI_1	RGCY	8 cut(s)	17, 33, 39, 46, 53, 213, 221, 280
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	4 cut(s)	18, 47, 274, 288
DpnI	GATC	2 cut(s)	141, 201
DpnII	GATC	2 cut(s)	139, 199
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco81I	CCTNAGG	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	250
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	3 cut(s)	44, 146, 349
FaiI	YATR	7 cut(s)	42, 84, 144, 185, 307, 330, 347
FatI	CATG	3 cut(s)	40, 142, 345
Fnu4HI	GCNGC	2 cut(s)	219, 299
Fsp4HI	GCNGC	2 cut(s)	219, 299
FspBI	CTAG	2 cut(s)	30, 222
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	2 cut(s)	219, 299
GsaI	CCCAGC	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	39
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	3 cut(s)	44, 146, 349
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HinfI	GANTC	3 cut(s)	22, 69, 234
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	3 cut(s)	21, 27, 277
Hpy188III	TCNNGA	4 cut(s)	76, 127, 143, 238
Hpy8I	GTNNAC	1 cut(s)	323
HpyCH4V	TGCA	1 cut(s)	298
HpyF3I	CTNAG	4 cut(s)	18, 47, 274, 288
Hsp92II	CATG	3 cut(s)	44, 146, 349
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	139, 199
LmnI	GCTCC	2 cut(s)	253, 316
LpnPI	CCDG	7 cut(s)	27, 87, 101, 199, 237, 264, 300
Lsp1109I	GCAGC	1 cut(s)	310
MaeI	CTAG	2 cut(s)	30, 222
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	2 cut(s)	141, 201
MboI	GATC	2 cut(s)	139, 199
MboII	GAAGA	3 cut(s)	50, 115, 146
MflI	RGATCY	1 cut(s)	199
MluCI	AATT	2 cut(s)	112, 172
MlyI	GAGTC	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	4 cut(s)	130, 151, 283, 307
MseI	TTAA	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
NdeII	GATC	2 cut(s)	139, 199
NlaIII	CATG	3 cut(s)	44, 146, 349
NlaIV	GGNNCC	1 cut(s)	201
NmuCI	GTSAC	1 cut(s)	160
NspI	RCATGY	1 cut(s)	349
PagI	TCATGA	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	22, 234
PkrI	GCNGC	2 cut(s)	220, 300
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	250
PspFI	CCCAGC	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	201
PsrI	GAACNNNNNNTAC	2 cut(s)	315, 347
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	2 cut(s)	219, 299
Sau3AI	GATC	2 cut(s)	139, 199
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	252
SetI	ASST	7 cut(s)	19, 35, 48, 83, 162, 215, 227
Sse9I	AATT	2 cut(s)	112, 172
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	2 cut(s)	30, 222
StyD4I	CCNGG	1 cut(s)	250
TasI	AATT	2 cut(s)	112, 172
TatI	WGTACW	1 cut(s)	322
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	2 cut(s)	22, 234
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	160
XceI	RCATGY	1 cut(s)	349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	210
XspI	CTAG	2 cut(s)	30, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.