Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0013184

Physical Location & Seq

Genomic Coordinates Reverse (-)

5554929 .. 5557037

Gene Structure 2109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1047800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGAAGCGTACAACCAGCCCAGATACCCACGAGCTTCGGCCACGAGCTTAGGGCTTGCCTCCGTTGCCGCCTCGTCAAGACCTACGATCAGTTCAGAGAATCAGGATGCGAGAACTGCCCCTTCTTCAAGATGGAGGAAGATTTCGATCGTGTTGCCGATTGCACCACCCCCAATTTCAATGGGATTATTTCAGTTACGGATCCAACTAGGAGTTGGGCTGCAAAATGGCTTCGACTTGGAAGATTTGTACCTGGTGTTTACACTCTTGCCGTTTCAGAGGTTCTTTCAGAGGATTTGCGGAATTTGTGTGAAGATGAGCAGGTGCAATACGTACCACCCAAACGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032044 GO:0032784 GO:0032991 GO:0034243 GO:0034641 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spt4

Protein Analysis

118

Amino Acids

13.38

Weight (kDa)

5.4

Isoelectric Point (pI)

52.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spt4	PF06093	17 - 93	1.4e-31	Spt4/RpoE2 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08565 AT5G08565 AT5G63670
fragaria_vesca	FvH4_4g10630
malus_domestica	MD04G1047800.v1.1 MD07G1114100.v1.1 MD09G1278200.v1.1 MD17G1271200.v1.1
prunus_persica	Prupe.3G015100_v2.0.a1
pyrus_communis	pycom04g04180
rosa_chinensis	RchiOBHm_Chr4g0406241
rosa_laevigata	RLG00000008786
rosa_multiflora	Rmu_ssc0000456.1_g000008
rosa_roxburghii	Rroxscaffold_5G00350980
rosa_rugosa	Rorug04G0067100
rosa_samantha	Rh4BG134100
rosa_wichuraiana	Rw4G011070 Rw4G011210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	313
Acc36I	ACCTGC	1 cut(s)	313
AciI	CCGC	2 cut(s)	70, 301
AclWI	GGATC	2 cut(s)	197, 210
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	304
AfaI	GTAC	3 cut(s)	12, 252, 336
AflIII	ACRYGT	1 cut(s)	346
AgsI	TTSAA	2 cut(s)	130, 181
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	2 cut(s)	36, 49
AluI	AGCT	2 cut(s)	36, 49
AlwI	GGATC	2 cut(s)	197, 210
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	304
BamHI	GGATCC	1 cut(s)	202
BauI	CACGAG	2 cut(s)	31, 44
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	257
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	1 cut(s)	255
BfaI	CTAG	1 cut(s)	210
BfuAI	ACCTGC	1 cut(s)	313
BisI	GCNGC	2 cut(s)	70, 222
BlsI	GCNGC	2 cut(s)	71, 223
Bme1390I	CCNGG	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	98
Bpu10I	CCTNAGC	1 cut(s)	50
BsaAI	YACGTR	1 cut(s)	334
BsaBI	GATNNNNATC	1 cut(s)	147
Bse8I	GATNNNNATC	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	113
BseJI	GATNNNNATC	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	208
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	151
BsnI	GGCC	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	88, 148, 202
BspACI	CCGC	2 cut(s)	70, 301
BspANI	GGCC	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	204
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	2 cut(s)	197, 210
BssMI	GATC	3 cut(s)	88, 148, 202
BssSI	CACGAG	2 cut(s)	31, 44
Bst2BI	CACGAG	2 cut(s)	31, 44
Bst2UI	CCWGG	1 cut(s)	255
BstBAI	YACGTR	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	113
BstKTI	GATC	3 cut(s)	91, 151, 205
BstMBI	GATC	3 cut(s)	88, 148, 202
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 117
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstSNI	TACGTA	1 cut(s)	334
BstV1I	GCAGC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	113
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	1 cut(s)	58
CsiI	ACCWGGT	1 cut(s)	253
Csp6I	GTAC	3 cut(s)	11, 251, 335
CviJI	RGCY	7 cut(s)	20, 36, 42, 49, 56, 221, 232
CviKI_1	RGCY	7 cut(s)	20, 36, 42, 49, 56, 221, 232
CviQI	GTAC	3 cut(s)	11, 251, 335
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	3 cut(s)	90, 150, 204
DpnII	GATC	3 cut(s)	88, 148, 202
EaeI	YGGCCR	1 cut(s)	40
Eco105I	TACGTA	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	253
FaiI	YATR	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	70, 222
FokI	GGATG	1 cut(s)	120
Fsp4HI	GCNGC	2 cut(s)	70, 222
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	2 cut(s)	70, 222
HaeIII	GGCC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	3 cut(s)	98, 280, 292
Hpy188III	TCNNGA	3 cut(s)	79, 105, 130
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	1 cut(s)	133
HpyCH4IV	ACGT	2 cut(s)	333, 346
HpyCH4V	TGCA	3 cut(s)	165, 224, 328
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 117
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	2 cut(s)	333, 346
Kzo9I	GATC	3 cut(s)	88, 148, 202
LpnPI	CCDG	6 cut(s)	30, 35, 90, 240, 267, 308
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	98
MabI	ACCWGGT	1 cut(s)	253
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	2 cut(s)	333, 346
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	3 cut(s)	90, 150, 204
MboI	GATC	3 cut(s)	88, 148, 202
MboII	GAAGA	4 cut(s)	118, 152, 255, 326
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	2 cut(s)	175, 304
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	5 cut(s)	71, 83, 130, 274, 286
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	66, 117
NdeII	GATC	3 cut(s)	88, 148, 202
NlaIV	GGNNCC	1 cut(s)	204
PaqCI	CACCTGC	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	71, 223
Ple19I	CGATCG	1 cut(s)	151
Ppu21I	YACGTR	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	202
PvuI	CGATCG	1 cut(s)	151
RsaI	GTAC	3 cut(s)	12, 252, 336
RsaNI	GTAC	3 cut(s)	11, 251, 335
SatI	GCNGC	2 cut(s)	70, 222
Sau3AI	GATC	3 cut(s)	88, 148, 202
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	8 cut(s)	38, 51, 86, 256, 285, 327, 336, 349
SexAI	ACCWGGT	1 cut(s)	253
SfaNI	GCATC	1 cut(s)	98
SnaBI	TACGTA	1 cut(s)	334
Sse9I	AATT	2 cut(s)	175, 304
SsiI	CCGC	2 cut(s)	70, 301
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	253
TaiI	ACGT	2 cut(s)	336, 349
TaqI	TCGA	2 cut(s)	147, 235
TasI	AATT	2 cut(s)	175, 304
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	221
TspGWI	ACGGA	2 cut(s)	53, 215
XapI	RAATTY	1 cut(s)	304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	213
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.