Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013184

Physical Location & Seq

Genomic Coordinates Forward (+)

1078815 .. 1080986

Gene Structure 2172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G015100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAGAAACGCACAACCTGCCCAGATTCCGACCAGCTTCGGCCACGAGCTTAGAGCTTGCCTTCGTTGCCGCCTCGTCAAGACGTACGATCAGTTCAGGGAATCGGGATGTGAGAACTGCCCTTTCTTCAATCTGCACGATGATAACGAGCGCATCTCCGATTGCACCACCCCTAATTTTAACGGGATAATTTCAATGATGGATCCAACTAGGAGTTGGGCTGGACGGTGGCTCCGAATTGGAAAATTTGTCCCTGGCGTCTACACTCTTGCTGTTTCAGAGGCTCTATCAGAGGATTTGCAGAATTTATGCGAAGATGAGCGGGTGCAATATGTACCACCAAAGCGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032044 GO:0032784 GO:0032991 GO:0034243 GO:0034641 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spt4

Protein Analysis

118

Amino Acids

13.44

Weight (kDa)

6.09

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08565 AT5G08565 AT5G63670
fragaria_vesca	FvH4_4g10630
malus_domestica	MD04G1047800.v1.1 MD07G1114100.v1.1 MD09G1278200.v1.1 MD17G1271200.v1.1
prunus_persica	Prupe.3G015100_v2.0.a1
pyrus_communis	pycom04g04180
rosa_chinensis	RchiOBHm_Chr4g0406241
rosa_laevigata	RLG00000008786
rosa_multiflora	Rmu_ssc0000456.1_g000008
rosa_roxburghii	Rroxscaffold_5G00350980
rosa_rugosa	Rorug04G0067100
rosa_samantha	Rh4BG134100
rosa_wichuraiana	Rw4G011070 Rw4G011210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	25
AccBSI	CCGCTC	1 cut(s)	322
AccI	GTMKAC	1 cut(s)	261
AciI	CCGC	2 cut(s)	70, 322
AclWI	GGATC	2 cut(s)	197, 210
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	2 cut(s)	245, 304
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	2 cut(s)	86, 336
AgsI	TTSAA	2 cut(s)	130, 195
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	3 cut(s)	36, 49, 56
AluI	AGCT	3 cut(s)	36, 49, 56
AlwI	GGATC	2 cut(s)	197, 210
AoxI	GGCC	1 cut(s)	40
ApoI	RAATTY	2 cut(s)	245, 304
AspLEI	GCGC	1 cut(s)	153
BamHI	GGATCC	1 cut(s)	202
BauI	CACGAG	1 cut(s)	44
BccI	CCATC	1 cut(s)	193
BciT130I	CCWGG	1 cut(s)	255
BfaI	CTAG	1 cut(s)	210
BfuAI	ACCTGC	1 cut(s)	25
BisI	GCNGC	1 cut(s)	70
BlsI	GCNGC	1 cut(s)	71
Bme1390I	CCNGG	1 cut(s)	255
BmiI	GGNNCC	2 cut(s)	204, 233
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	162
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
BsaHI	GRCGYC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	253
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	113
BsgI	GTGCAG	1 cut(s)	119
BshFI	GGCC	1 cut(s)	42
BsiWI	CGTACG	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	88, 202
BspACI	CCGC	2 cut(s)	70, 322
BspANI	GGCC	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	204, 233
BspMI	ACCTGC	1 cut(s)	25
BspPI	GGATC	2 cut(s)	197, 210
BsrBI	CCGCTC	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	2 cut(s)	88, 202
BssNI	GRCGYC	1 cut(s)	258
BssSI	CACGAG	1 cut(s)	44
Bst2BI	CACGAG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	228
BstACI	GRCGYC	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	58, 348
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	2 cut(s)	91, 205
BstMBI	GATC	2 cut(s)	88, 202
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 66
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	113
BveI	ACCTGC	1 cut(s)	25
Cac8I	GCNNGC	2 cut(s)	58, 348
CfoI	GCGC	1 cut(s)	153
CseI	GACGC	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	85, 335
CviAII	CATG	1 cut(s)	351
CviJI	RGCY	7 cut(s)	36, 42, 49, 56, 221, 232, 284
CviKI_1	RGCY	7 cut(s)	36, 42, 49, 56, 221, 232, 284
CviQI	GTAC	2 cut(s)	85, 335
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	2 cut(s)	90, 204
DpnII	GATC	2 cut(s)	88, 202
EaeI	YGGCCR	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	253
FaeI	CATG	1 cut(s)	354
FaiI	YATR	3 cut(s)	310, 333, 352
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	1 cut(s)	350
FauI	CCCGC	1 cut(s)	315
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	70
FokI	GGATG	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	70
FspBI	CTAG	1 cut(s)	210
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	42
HgaI	GACGC	1 cut(s)	247
HhaI	GCGC	1 cut(s)	153
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	354
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HinfI	GANTC	2 cut(s)	25, 101
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	5 cut(s)	30, 160, 236, 280, 292
Hpy188III	TCNNGA	2 cut(s)	79, 105
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	5 cut(s)	136, 165, 301, 328, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 66
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	83
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	1 cut(s)	354
HspAI	GCGC	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	88, 202
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	7 cut(s)	30, 35, 46, 82, 207, 240, 267
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	83
MalI	GATC	2 cut(s)	90, 204
MbiI	CCGCTC	1 cut(s)	322
MboI	GATC	2 cut(s)	88, 202
MboII	GAAGA	2 cut(s)	118, 326
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	5 cut(s)	175, 189, 237, 245, 304
MmeI	TCCRAC	2 cut(s)	53, 230
MnlI	CCTC	3 cut(s)	83, 274, 286
MseI	TTAA	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	17, 66
NdeII	GATC	2 cut(s)	88, 202
NlaIII	CATG	1 cut(s)	354
NlaIV	GGNNCC	2 cut(s)	204, 233
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 232
PfeI	GAWTC	2 cut(s)	25, 101
Pfl23II	CGTACG	1 cut(s)	84
PkrI	GCNGC	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspLI	CGTACG	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	204, 233
PsrI	GAACNNNNNNTAC	2 cut(s)	77, 109
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	2 cut(s)	86, 336
RsaNI	GTAC	2 cut(s)	85, 335
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	1 cut(s)	70
Sau3AI	GATC	2 cut(s)	88, 202
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	5 cut(s)	19, 38, 51, 58, 86
SfaNI	GCATC	1 cut(s)	162
Sse9I	AATT	5 cut(s)	175, 189, 237, 245, 304
SsiI	CCGC	2 cut(s)	70, 322
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	228
TaiI	ACGT	1 cut(s)	86
TasI	AATT	5 cut(s)	175, 189, 237, 245, 304
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	2 cut(s)	25, 101
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
XapI	RAATTY	2 cut(s)	245, 304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	213
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.