Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0013184

Physical Location & Seq

Genomic Coordinates Reverse (-)

13683513 .. 13683731

Gene Structure 219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1114100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGAACGACGACAACGAGTGCGTCATCGATTGCACCACTCCTAATTTCAACGGGATCATTCTAGTAATGGATCCGAGTAGGAGTTGGGCTGTGTGGTGGCTCCGAATTACAAAATTTATCCCTGGTTGTTACATACTCGCTGTTTCAGAGGCTCTTTCGGAGGATATGAAGAATGAGATTCTGCCACAATTCAAGTTTATGAGGAAACAACTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032044 GO:0032784 GO:0032991 GO:0034243 GO:0034641 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spt4

Protein Analysis

73

Amino Acids

8.35

Weight (kDa)

4.81

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spt4	PF06093	1 - 48	2.9e-12	Spt4/RpoE2 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08565 AT5G08565 AT5G63670
fragaria_vesca	FvH4_4g10630
malus_domestica	MD04G1047800.v1.1 MD07G1114100.v1.1 MD09G1278200.v1.1 MD17G1271200.v1.1
prunus_persica	Prupe.3G015100_v2.0.a1
pyrus_communis	pycom04g04180
rosa_chinensis	RchiOBHm_Chr4g0406241
rosa_laevigata	RLG00000008786
rosa_multiflora	Rmu_ssc0000456.1_g000008
rosa_roxburghii	Rroxscaffold_5G00350980
rosa_rugosa	Rorug04G0067100
rosa_samantha	Rh4BG134100
rosa_wichuraiana	Rw4G011070 Rw4G011210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	62, 65, 78
AcsI	RAATTY	1 cut(s)	113
AgsI	TTSAA	2 cut(s)	49, 193
AjnI	CCWGG	1 cut(s)	121
AlwI	GGATC	3 cut(s)	62, 65, 78
ApoI	RAATTY	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	123
BfaI	CTAG	1 cut(s)	62
Bme1390I	CCNGG	1 cut(s)	123
BmiI	GGNNCC	2 cut(s)	72, 101
BmrFI	CCNGG	1 cut(s)	123
Bsa29I	ATCGAT	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	123
BseCI	ATCGAT	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	121
BseNI	ACTGG	1 cut(s)	216
BshVI	ATCGAT	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	54, 70
BspDI	ATCGAT	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	72, 101
BspPI	GGATC	3 cut(s)	62, 65, 78
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	54, 70
Bst2UI	CCWGG	1 cut(s)	123
BstKTI	GATC	2 cut(s)	57, 73
BstMBI	GATC	2 cut(s)	54, 70
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
Bsu15I	ATCGAT	1 cut(s)	27
BsuTUI	ATCGAT	1 cut(s)	27
ClaI	ATCGAT	1 cut(s)	27
CseI	GACGC	1 cut(s)	10
CviJI	RGCY	3 cut(s)	89, 100, 152
CviKI_1	RGCY	3 cut(s)	89, 100, 152
DpnI	GATC	2 cut(s)	56, 72
DpnII	GATC	2 cut(s)	54, 70
EcoRII	CCWGG	1 cut(s)	121
FaiI	YATR	3 cut(s)	134, 167, 200
FspBI	CTAG	1 cut(s)	62
HgaI	GACGC	1 cut(s)	10
HinfI	GANTC	1 cut(s)	178
Hpy188I	TCNGA	4 cut(s)	75, 104, 148, 160
Hpy99I	CGWCG	1 cut(s)	11
HpyCH4V	TGCA	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	54, 70
LmnI	GCTCC	1 cut(s)	105
LpnPI	CCDG	3 cut(s)	108, 135, 197
MaeI	CTAG	1 cut(s)	62
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	2 cut(s)	56, 72
MboI	GATC	2 cut(s)	54, 70
MboII	GAAGA	1 cut(s)	181
MflI	RGATCY	1 cut(s)	70
MluCI	AATT	4 cut(s)	43, 105, 113, 188
MnlI	CCTC	3 cut(s)	142, 154, 195
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
NdeII	GATC	2 cut(s)	54, 70
NlaIV	GGNNCC	2 cut(s)	72, 101
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	72, 101
PsuI	RGATCY	1 cut(s)	70
Sau3AI	GATC	2 cut(s)	54, 70
ScrFI	CCNGG	1 cut(s)	123
SgeI	CNNG	8 cut(s)	28, 64, 74, 87, 134, 135, 149, 205
Sse9I	AATT	4 cut(s)	43, 105, 113, 188
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	121
TaqI	TCGA	1 cut(s)	27
TasI	AATT	4 cut(s)	43, 105, 113, 188
TfiI	GAWTC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	17, 182
XapI	RAATTY	1 cut(s)	113
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.