Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0013184

Physical Location & Seq

Genomic Coordinates Reverse (-)

26282216 .. 26285256

Gene Structure 3041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G011070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAAGAGCGCAGCTCAGCCGGCCCAGATTCCGACAAGCTTCGGCAACGAGCTTAGGGCCTGCCTCCGTTGCCGCCTCGTCAAGACCTACGATCAGTTCAGAGAAAACGGATGCGAGAACTGTCCCTTCTTCAAGATGGATGAAGATAGCGACCTGGTCAACGAAGGCACTACTCCCAATTTCAATGGCATCATTTCGGTCATGGATCCTGACAAGAGCTGGGCTGCTAAGTGGCTTCGAATTTCGAGGTTTGTTCCTGGTTGCTACACTCTTGCAGTTTCAGAGGCTCTTTCCGAGGATTTGCAGAATATATGTGAAGATGAGCATGTGCAATATGTACCACCAAAACGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032044 GO:0032784 GO:0032991 GO:0034243 GO:0034641 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spt4

Protein Analysis

118

Amino Acids

13.39

Weight (kDa)

4.95

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spt4	PF06093	18 - 94	3.1e-31	Spt4/RpoE2 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08565 AT5G08565 AT5G63670
fragaria_vesca	FvH4_4g10630
malus_domestica	MD04G1047800.v1.1 MD07G1114100.v1.1 MD09G1278200.v1.1 MD17G1271200.v1.1
prunus_persica	Prupe.3G015100_v2.0.a1
pyrus_communis	pycom04g04180
rosa_chinensis	RchiOBHm_Chr4g0406241
rosa_laevigata	RLG00000008786
rosa_multiflora	Rmu_ssc0000456.1_g000008
rosa_roxburghii	Rroxscaffold_5G00350980
rosa_rugosa	Rorug04G0067100
rosa_samantha	Rh4BG134100
rosa_wichuraiana	Rw4G011070 Rw4G011210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	2 cut(s)	200, 213
AcsI	RAATTY	1 cut(s)	240
AfaI	GTAC	1 cut(s)	339
AflIII	ACRYGT	1 cut(s)	349
AgsI	TTSAA	2 cut(s)	133, 184
AjnI	CCWGG	2 cut(s)	153, 256
AluBI	AGCT	4 cut(s)	14, 39, 52, 219
AluI	AGCT	4 cut(s)	14, 39, 52, 219
AlwI	GGATC	2 cut(s)	200, 213
AoxI	GGCC	2 cut(s)	21, 57
ApeKI	GCWGC	2 cut(s)	11, 224
ApoI	RAATTY	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	22, 57
AsuII	TTCGAA	1 cut(s)	238
BamHI	GGATCC	1 cut(s)	205
BbvI	GCAGC	2 cut(s)	23, 211
BccI	CCATC	1 cut(s)	130
BciT130I	CCWGG	2 cut(s)	155, 258
BisI	GCNGC	3 cut(s)	12, 73, 225
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	3 cut(s)	13, 74, 226
Bme1390I	CCNGG	2 cut(s)	155, 258
BmgT120I	GGNCC	2 cut(s)	22, 57
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	2 cut(s)	155, 258
BmsI	GCATC	2 cut(s)	101, 198
BplI	GAGNNNNNCTC	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	53
Bpu1102I	GCTNAGC	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	294
Bse118I	RCCGGY	1 cut(s)	19
BseBI	CCWGG	2 cut(s)	155, 258
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	2 cut(s)	116, 145
BseMII	CTCAG	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	23, 211
BseYI	CCCAGC	1 cut(s)	219
BshFI	GGCC	2 cut(s)	23, 59
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	108
BsnI	GGCC	2 cut(s)	23, 59
Bsp119I	TTCGAA	1 cut(s)	238
Bsp143I	GATC	2 cut(s)	91, 205
Bsp1720I	GCTNAGC	1 cut(s)	15
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	2 cut(s)	23, 59
BspCNI	CTCAG	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	207
BspPI	GGATC	2 cut(s)	200, 213
BspT104I	TTCGAA	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	19
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	2 cut(s)	91, 205
Bst2UI	CCWGG	2 cut(s)	155, 258
Bst4CI	ACNGT	1 cut(s)	122
BstBI	TTCGAA	1 cut(s)	238
BstC8I	GCNNGC	2 cut(s)	21, 61
BstDEI	CTNAG	3 cut(s)	15, 53, 228
BstF5I	GGATG	2 cut(s)	116, 145
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	2 cut(s)	94, 208
BstMBI	GATC	2 cut(s)	91, 205
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 69
BstNI	CCWGG	2 cut(s)	155, 258
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	153, 256
BstV1I	GCAGC	2 cut(s)	23, 211
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	23, 59
BtsCI	GGATG	2 cut(s)	116, 145
Cac8I	GCNNGC	2 cut(s)	21, 61
CfoI	GCGC	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	22, 57
CsiI	ACCWGGT	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	2 cut(s)	202, 326
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	3 cut(s)	15, 53, 228
DpnI	GATC	2 cut(s)	93, 207
DpnII	GATC	2 cut(s)	91, 205
EcoO109I	RGGNCCY	1 cut(s)	57
EcoRII	CCWGG	2 cut(s)	153, 256
FaeI	CATG	2 cut(s)	205, 329
FaiI	YATR	6 cut(s)	203, 311, 313, 327, 336, 355
FaqI	GGGAC	1 cut(s)	108
FatI	CATG	2 cut(s)	201, 325
Fnu4HI	GCNGC	3 cut(s)	12, 73, 225
FokI	GGATG	2 cut(s)	123, 152
Fsp4HI	GCNGC	3 cut(s)	12, 73, 225
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	3 cut(s)	12, 73, 225
GsaI	CCCAGC	1 cut(s)	223
HaeIII	GGCC	2 cut(s)	23, 59
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	2 cut(s)	205, 329
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	37
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	20
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	4 cut(s)	33, 101, 283, 295
Hpy188III	TCNNGA	3 cut(s)	82, 133, 209
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	2 cut(s)	136, 158
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	3 cut(s)	275, 304, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 69
HpyF3I	CTNAG	3 cut(s)	15, 53, 228
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	2 cut(s)	205, 329
HspAI	GCGC	1 cut(s)	9
KroI	GCCGGC	1 cut(s)	19
KroNI	GCCGGC	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	91, 205
LpnPI	CCDG	9 cut(s)	33, 38, 73, 140, 167, 205, 222, 243, 270
Lsp1109I	GCAGC	2 cut(s)	23, 211
LweI	GCATC	2 cut(s)	101, 198
MabI	ACCWGGT	1 cut(s)	153
MaeII	ACGT	1 cut(s)	349
MalI	GATC	2 cut(s)	93, 207
MboI	GATC	2 cut(s)	91, 205
MboII	GAAGA	4 cut(s)	16, 121, 155, 329
MflI	RGATCY	1 cut(s)	205
MluCI	AATT	2 cut(s)	178, 240
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	5 cut(s)	74, 86, 240, 277, 289
MroNI	GCCGGC	1 cut(s)	19
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	2 cut(s)	155, 258
MvaI	CCWGG	2 cut(s)	155, 258
MwoI	GCNNNNNNNGC	2 cut(s)	20, 69
NaeI	GCCGGC	1 cut(s)	21
NdeII	GATC	2 cut(s)	91, 205
NgoMIV	GCCGGC	1 cut(s)	19
NlaIII	CATG	2 cut(s)	205, 329
NlaIV	GGNNCC	1 cut(s)	207
NspI	RCATGY	1 cut(s)	329
NspV	TTCGAA	1 cut(s)	238
PdiI	GCCGGC	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	28
PflFI	GACNNNGTC	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	13, 74, 226
Psp6I	CCWGG	2 cut(s)	153, 256
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	2 cut(s)	153, 256
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	2 cut(s)	22, 57
PsuI	RGATCY	1 cut(s)	205
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
SatI	GCNGC	3 cut(s)	12, 73, 225
Sau3AI	GATC	2 cut(s)	91, 205
Sau96I	GGNCC	2 cut(s)	22, 57
ScrFI	CCNGG	2 cut(s)	155, 258
SetI	ASST	8 cut(s)	16, 41, 54, 89, 156, 221, 251, 352
SexAI	ACCWGGT	1 cut(s)	153
SfaNI	GCATC	2 cut(s)	101, 198
SfuI	TTCGAA	1 cut(s)	238
Sse9I	AATT	2 cut(s)	178, 240
SsiI	CCGC	1 cut(s)	73
StyD4I	CCNGG	2 cut(s)	153, 256
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	2 cut(s)	238, 245
TaqII	GACCGA	1 cut(s)	187
TasI	AATT	2 cut(s)	178, 240
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	28
TseI	GCWGC	2 cut(s)	11, 224
TspDTI	ATGAA	2 cut(s)	17, 156
TspGWI	ACGGA	2 cut(s)	56, 123
Tth111I	GACNNNGTC	1 cut(s)	155
XapI	RAATTY	1 cut(s)	240
XceI	RCATGY	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.