AT5G64300

GTP cyclohydrolase II

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
25718008 .. 25721166
3159 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G64300.1

Sequence Viewer

Length: 1632 bp
ATGTCTTCCATCAATTTATCCTCATCATCTCCTTCCACCATCTCTCTTTCCCGCTCAAGACTAAGCCAAAGCTCTACTACATTACTCCATGGACTACATCGTGTTACTTTACCATCTAACCATCCATTGTCAACCTTTTCCATTAAAACCAATACTGGAAAAGTTAAGGCTGCAGTGATCTCTAGAGAAGATGATCTGCTCTCATTCACCAACGGAAACACTCCTCTCTCAAATGGGTCTCTCATTGATGATCGGACCGAAGAGCCATTAGAGGCTGATTCGGTTTCACTTGGAACACTTGCTGCTGATTCTGCTCCTGCACCAGCCAATGGTTTTGTTGCTGAAGATGATGACTTTGAGTTGGATTTACCAACTCCTGGTTTCTCTTCTATCCCTGAGGCCATTGAAGATATACGCCAAGGAAAGCTTGTGGTGGTTGTGGATGATGAAGATAGGGAAAATGAAGGGGATTTGGTGATGGCTGCTCAGTTAGCAACACCTGAAGCTATGGCTTTTATTGTGAGACATGGAACTGGGATAGTTTGTGTGAGCATGAAAGAAGATGATCTCGAGAGGTTGCACCTTCCTCTAATGGTGAATCAGAAGGAAAACGAAGAAAAGCTCTCTACTGCATTTACAGTGACTGTGGATGCAAAACATGGTACAACAACGGGAGTATCAGCTCGTGACAGGGCAACAACCATATTGTCTCTTGCATCAAGAGATTCAAAGCCTGAGGATTTCAATCGTCCAGGTCATATCTTCCCACTGAAGTATCGGGAAGGTGGGGTTCTGAAAAGGGCTGGACACACTGAAGCATCTGTTGATCTCACTGTTTTAGCTGGACTGGATCCTGTTGGAGTACTTTGTGAAATTGTTGATGATGATGGTTCCATGGCTAGATTACCAAAACTTCGTGAATTTGCCGCCGAGAACAACCTGAAAGTTGTTTCCATCGCAGATTTGATCAGGTATAGAAGAAAGAGAGATAAATTAGTGGAACGTGCTTCTGCGGCTCGGATCCCAACAATGTGGGGACCTTTCACTGCTTACTGCTATAGGTCCATATTAGACGGAATAGAGCACATAGCAATGGTTAAGGGTGAGATTGGTGACGGTCAAGACATTCTCGTGAGGGTTCATTCTGAATGTCTAACAGGGGACATATTTGGGTCTGCAAGGTGTGATTGCGGGAACCAGCTAGCACTCTCGATGCAGCAGATCGAGGCTACTGGTCGCGGTGTGCTGGTTTACCTACGTGGACATGAAGGAAGAGGGATCGGTTTAGGACACAAGCTTCGAGCTTACAATCTGCAAGATGCTGGTCGAGACACGGTTGAAGCTAATGAGGAATTAGGACTTCCTGTTGATTCTAGAGAGTATGGAATTGGTGCACAGATAATAAGGGATTTAGGTGTTAGGACAATGAAGCTGATGACAAATAATCCCGCAAAGTATGTTGGTTTGAAGGGATATGGATTAGCCATTGTTGGGAGAGTCCCTCTATTGAGTCTTATCACGAAGGAGAATAAGAGATATCTGGAGACAAAGCGGACCAAGATGGGTCACATGTATGGCTTGAAGTTCAAAGGGGATGTTGTGGAGAAGATTGAGTCTGAATCTGAGTCCTAA

Protein Analysis

543

Amino Acids

59.06

Weight (kDa)

5.58

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHBP_synthase PF00926 133 - 325 2.3e-86 3,4-dihydroxy-2-butanone 4-phosphate synthase
GTP_cyclohydro2 PF00925 335 - 501 1e-70 GTP cyclohydrolase II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012821)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 329, 377
AccBSI CCGCTC 1 cut(s) 54
AccII CGCG 1 cut(s) 1239
AciI CCGC 7 cut(s) 52, 927, 1013, 1191, 1239, 1449, 1552
AclWI GGATC 5 cut(s) 845, 858, 1015, 1028, 1286
AcsI RAATTY 1 cut(s) 920
AcuI CTGAAG 4 cut(s) 363, 522, 791, 834
AfaI GTAC 2 cut(s) 664, 864
AfiI CCNNNNNNNGG 3 cut(s) 329, 377, 1491
AflIII ACRYGT 1 cut(s) 1569
AgsI TTSAA 7 cut(s) 407, 729, 745, 1340, 1468, 1582, 1588
AjnI CCWGG 2 cut(s) 376, 751
Alw21I GWGCWC 2 cut(s) 1086, 1396
Alw26I GTCTC 5 cut(s) 243, 517, 714, 1323, 1538
Alw44I GTGCAC 1 cut(s) 1392
AlwI GGATC 5 cut(s) 845, 858, 1015, 1028, 1286
AlwNI CAGNNNCTG 1 cut(s) 644
Ama87I CYCGRG 1 cut(s) 569
AoxI GGCC 1 cut(s) 399
ApaLI GTGCAC 1 cut(s) 1392
ApeKI GCWGC 4 cut(s) 170, 302, 482, 1216
ApoI RAATTY 1 cut(s) 920
ArsI GACNNNNNNTTYG 2 cut(s) 1281, 1313
AspS9I GGNCC 4 cut(s) 255, 1037, 1062, 1554
AsuHPI GGTGA 5 cut(s) 199, 487, 607, 1115, 1124
AsuNHI GCTAGC 1 cut(s) 1201
AvaI CYCGRG 1 cut(s) 569
AvaII GGWCC 4 cut(s) 255, 1037, 1062, 1554
AxyI CCTNAGG 2 cut(s) 396, 735
BaeGI GKGCMC 1 cut(s) 1396
BaeI ACNNNNGTAYC 4 cut(s) 660, 693, 758, 791
BamHI GGATCC 2 cut(s) 850, 1020
BauI CACGAG 2 cut(s) 684, 1130
Bbv12I GWGCWC 2 cut(s) 1086, 1396
BbvI GCAGC 4 cut(s) 157, 289, 469, 1228
BccI CCATC 8 cut(s) 17, 47, 121, 129, 472, 881, 962, 1555
BciT130I CCWGG 2 cut(s) 378, 753
BclI TGATCA 1 cut(s) 966
BcoDI GTCTC 5 cut(s) 243, 517, 714, 1323, 1538
BfaI CTAG 4 cut(s) 183, 900, 1202, 1374
BfmI CTRYAG 2 cut(s) 171, 1057
BisI GCNGC 6 cut(s) 171, 303, 483, 927, 1014, 1217
BlsI GCNGC 6 cut(s) 172, 304, 484, 928, 1015, 1218
BmcAI AGTACT 1 cut(s) 864
Bme1390I CCNGG 2 cut(s) 378, 753
Bme18I GGWCC 4 cut(s) 255, 1037, 1062, 1554
BmeT110I CYCGRG 1 cut(s) 569
BmgT120I GGNCC 4 cut(s) 255, 1037, 1062, 1554
BmiI GGNNCC 5 cut(s) 852, 892, 1022, 1038, 1196
BmrFI CCNGG 2 cut(s) 378, 753
BmrI ACTGGG 1 cut(s) 543
BmsI GCATC 5 cut(s) 640, 725, 827, 1203, 1309
BmtI GCTAGC 1 cut(s) 1205
BmuI ACTGGG 1 cut(s) 543
BplI GAGNNNNNCTC 2 cut(s) 1486, 1518
BpmI CTGGAG 1 cut(s) 1562
BpuEI CTTGAG 1 cut(s) 40
BsaAI YACGTR 1 cut(s) 1259
BsaBI GATNNNNATC 1 cut(s) 744
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 3 cut(s) 88, 418, 894
Bsc4I CCNNNNNNNGG 3 cut(s) 329, 377, 1491
Bse1I ACTGG 4 cut(s) 160, 538, 852, 1237
Bse21I CCTNAGG 2 cut(s) 396, 735
Bse3DI GCAATG 1 cut(s) 1098
Bse8I GATNNNNATC 1 cut(s) 744
BseBI CCWGG 2 cut(s) 378, 753
BseDI CCNNGG 3 cut(s) 88, 418, 894
BseGI GGATG 4 cut(s) 121, 448, 655, 1600
BseJI GATNNNNATC 1 cut(s) 744
BseLI CCNNNNNNNGG 3 cut(s) 329, 377, 1491
BseMI GCAATG 1 cut(s) 1098
BseMII CTCAG 4 cut(s) 387, 500, 726, 1614
BseNI ACTGG 4 cut(s) 160, 538, 852, 1237
BseRI GAGGAG 1 cut(s) 213
BseSI GKGCMC 1 cut(s) 1396
BseXI GCAGC 4 cut(s) 157, 289, 469, 1228
BsgI GTGCAG 1 cut(s) 303
Bsh1236I CGCG 1 cut(s) 1239
BshFI GGCC 1 cut(s) 401
BsiHKAI GWGCWC 2 cut(s) 1086, 1396
BsiHKCI CYCGRG 1 cut(s) 569
BslFI GGGAC 3 cut(s) 1050, 1175, 1484
BslI CCNNNNNNNGG 3 cut(s) 329, 377, 1491
BsmAI GTCTC 5 cut(s) 243, 517, 714, 1323, 1538
BsmFI GGGAC 3 cut(s) 1050, 1175, 1484
BsnI GGCC 1 cut(s) 401
Bso31I GGTCTC 1 cut(s) 243
BsoBI CYCGRG 1 cut(s) 569
Bsp1286I GDGCHC 2 cut(s) 1086, 1396
Bsp19I CCATGG 2 cut(s) 88, 894
BspACI CCGC 7 cut(s) 52, 927, 1013, 1191, 1239, 1449, 1552
BspANI GGCC 1 cut(s) 401
BspCNI CTCAG 4 cut(s) 388, 499, 727, 1615
BspFNI CGCG 1 cut(s) 1239
BspLI GGNNCC 5 cut(s) 852, 892, 1022, 1038, 1196
BspMAI CTGCAG 1 cut(s) 175
BspOI GCTAGC 1 cut(s) 1205
BspPI GGATC 5 cut(s) 845, 858, 1015, 1028, 1286
BspQI GCTCTTC 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 243
BsrBI CCGCTC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 1098
BsrI ACTGG 4 cut(s) 160, 538, 852, 1237
BssECI CCNNGG 3 cut(s) 88, 418, 894
BssSI CACGAG 2 cut(s) 684, 1130
BssT1I CCWWGG 3 cut(s) 88, 418, 894
Bst2BI CACGAG 2 cut(s) 684, 1130
Bst2UI CCWGG 2 cut(s) 378, 753
Bst4CI ACNGT 5 cut(s) 640, 646, 835, 1118, 1336
Bst6I CTCTTC 3 cut(s) 255, 391, 1267
BstBAI YACGTR 1 cut(s) 1259
BstC8I GCNNGC 1 cut(s) 1203
BstDEI CTNAG 5 cut(s) 62, 396, 486, 735, 1623
BstDSI CCRYGG 2 cut(s) 88, 894
BstF5I GGATG 4 cut(s) 121, 448, 655, 1600
BstFNI CGCG 1 cut(s) 1239
BstMAI GTCTC 5 cut(s) 243, 517, 714, 1323, 1538
BstMWI GCNNNNNNNGC 3 cut(s) 311, 491, 1013
BstNI CCWGG 2 cut(s) 378, 753
BstNSI RCATGY 1 cut(s) 1573
BstSCI CCNGG 2 cut(s) 376, 751
BstSFI CTRYAG 2 cut(s) 171, 1057
BstSLI GKGCMC 1 cut(s) 1396
BstUI CGCG 1 cut(s) 1239
BstV1I GCAGC 4 cut(s) 157, 289, 469, 1228
BstX2I RGATCY 2 cut(s) 850, 1020
BstXI CCANNNNNNTGG 1 cut(s) 1032
BstYI RGATCY 2 cut(s) 850, 1020
Bsu36I CCTNAGG 2 cut(s) 396, 735
BsuRI GGCC 1 cut(s) 401
BtgI CCRYGG 2 cut(s) 88, 894
BtgZI GCGATG 1 cut(s) 940
BtsCI GGATG 4 cut(s) 121, 448, 655, 1600
BtsI GCAGTG 2 cut(s) 180, 1044
BtsIMutI CAGTG 6 cut(s) 180, 645, 767, 810, 831, 1044
Cac8I GCNNGC 1 cut(s) 1203
CaiI CAGNNNCTG 1 cut(s) 644
Cfr13I GGNCC 4 cut(s) 255, 1037, 1062, 1554
CpoI CGGWCCG 1 cut(s) 255
Csp6I GTAC 2 cut(s) 663, 863
CspI CGGWCCG 1 cut(s) 255
CviAII CATG 7 cut(s) 89, 527, 553, 659, 895, 1265, 1570
CviQI GTAC 2 cut(s) 663, 863
DdeI CTNAG 5 cut(s) 62, 396, 486, 735, 1623
Eam1104I CTCTTC 3 cut(s) 255, 391, 1267
EarI CTCTTC 3 cut(s) 255, 391, 1267
Eco130I CCWWGG 3 cut(s) 88, 418, 894
Eco31I GGTCTC 1 cut(s) 243
Eco32I GATATC 1 cut(s) 1538
Eco47I GGWCC 4 cut(s) 255, 1037, 1062, 1554
Eco57I CTGAAG 4 cut(s) 363, 522, 791, 834
Eco81I CCTNAGG 2 cut(s) 396, 735
Eco88I CYCGRG 1 cut(s) 569
EcoO109I RGGNCCY 1 cut(s) 1037
EcoRII CCWGG 2 cut(s) 376, 751
EcoRV GATATC 1 cut(s) 1538
EcoT14I CCWWGG 3 cut(s) 88, 418, 894
ErhI CCWWGG 3 cut(s) 88, 418, 894
FaeI CATG 7 cut(s) 92, 530, 556, 662, 898, 1268, 1573
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FaqI GGGAC 3 cut(s) 1050, 1175, 1484
FatI CATG 7 cut(s) 88, 526, 552, 658, 894, 1264, 1569
FauI CCCGC 3 cut(s) 59, 1184, 1456
FbaI TGATCA 1 cut(s) 966
Fnu4HI GCNGC 6 cut(s) 171, 303, 483, 927, 1014, 1217
FokI GGATG 4 cut(s) 108, 455, 662, 1607
Fsp4HI GCNGC 6 cut(s) 171, 303, 483, 927, 1014, 1217
FspBI CTAG 4 cut(s) 183, 900, 1202, 1374
GluI GCNGC 6 cut(s) 171, 303, 483, 927, 1014, 1217
GsuI CTGGAG 1 cut(s) 1562
HaeIII GGCC 1 cut(s) 401
Hin1II CATG 7 cut(s) 92, 530, 556, 662, 898, 1268, 1573
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HindIII AAGCTT 2 cut(s) 425, 1295
HphI GGTGA 5 cut(s) 199, 487, 607, 1115, 1124
Hpy166II GTNNAC 4 cut(s) 132, 1252, 1262, 1394
Hpy188I TCNGA 7 cut(s) 255, 603, 795, 1020, 1147, 1618, 1624
Hpy8I GTNNAC 4 cut(s) 132, 1252, 1262, 1394
HpyAV CCTTC 8 cut(s) 42, 458, 593, 598, 776, 1262, 1462, 1516
HpyCH4III ACNGT 5 cut(s) 640, 646, 835, 1118, 1336
HpyCH4IV ACGT 2 cut(s) 1003, 1258
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 491, 1013
HpyF3I CTNAG 5 cut(s) 62, 396, 486, 735, 1623
HpySE526I ACGT 2 cut(s) 1003, 1258
Hsp92II CATG 7 cut(s) 92, 530, 556, 662, 898, 1268, 1573
Ksp22I TGATCA 1 cut(s) 966
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 319
Lsp1109I GCAGC 4 cut(s) 157, 289, 469, 1228
LweI GCATC 5 cut(s) 640, 725, 827, 1203, 1309
MaeI CTAG 4 cut(s) 183, 900, 1202, 1374
MaeII ACGT 2 cut(s) 1003, 1258
MaeIII GTNAC 5 cut(s) 103, 640, 686, 1112, 1565
MbiI CCGCTC 1 cut(s) 54
MflI RGATCY 2 cut(s) 850, 1020
MhlI GDGCHC 2 cut(s) 1086, 1396
MluCI AATT 6 cut(s) 13, 873, 920, 992, 1352, 1386
MlyI GAGTC 3 cut(s) 1506, 1519, 1622
MmeI TCCRAC 2 cut(s) 342, 838
MseI TTAA 3 cut(s) 144, 165, 1098
MslI CAYNNNNRTG 3 cut(s) 1091, 1130, 1572
MspR9I CCNGG 2 cut(s) 378, 753
MvaI CCWGG 2 cut(s) 378, 753
MvnI CGCG 1 cut(s) 1239
MwoI GCNNNNNNNGC 3 cut(s) 311, 491, 1013
NcoI CCATGG 2 cut(s) 88, 894
NheI GCTAGC 1 cut(s) 1201
NlaIII CATG 7 cut(s) 92, 530, 556, 662, 898, 1268, 1573
NlaIV GGNNCC 5 cut(s) 852, 892, 1022, 1038, 1196
NmeAIII GCCGAG 1 cut(s) 955
NmuCI GTSAC 4 cut(s) 640, 686, 1112, 1565
NspI RCATGY 1 cut(s) 1573
PaeR7I CTCGAG 1 cut(s) 569
PciI ACATGT 1 cut(s) 1569
PciSI GCTCTTC 1 cut(s) 255
PfeI GAWTC 6 cut(s) 278, 308, 598, 725, 1370, 1619
PflMI CCANNNNNTGG 2 cut(s) 329, 377
PkrI GCNGC 6 cut(s) 172, 304, 484, 928, 1015, 1218
PleI GAGTC 3 cut(s) 1505, 1518, 1621
PpsI GAGTC 3 cut(s) 1505, 1518, 1621
Ppu21I YACGTR 1 cut(s) 1259
PpuMI RGGWCCY 1 cut(s) 1037
PscI ACATGT 1 cut(s) 1569
Psp5II RGGWCCY 1 cut(s) 1037
Psp6I CCWGG 2 cut(s) 376, 751
PspGI CCWGG 2 cut(s) 376, 751
PspN4I GGNNCC 5 cut(s) 852, 892, 1022, 1038, 1196
PspPI GGNCC 4 cut(s) 255, 1037, 1062, 1554
PspPPI RGGWCCY 1 cut(s) 1037
PstI CTGCAG 1 cut(s) 175
PstNI CAGNNNCTG 1 cut(s) 644
PsuI RGATCY 2 cut(s) 850, 1020
RsaI GTAC 2 cut(s) 664, 864
RsaNI GTAC 2 cut(s) 663, 863
RseI CAYNNNNRTG 3 cut(s) 1091, 1130, 1572
Rsr2I CGGWCCG 1 cut(s) 255
RsrII CGGWCCG 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 3 cut(s) 144, 165, 1098
SatI GCNGC 6 cut(s) 171, 303, 483, 927, 1014, 1217
Sau96I GGNCC 4 cut(s) 255, 1037, 1062, 1554
ScaI AGTACT 1 cut(s) 864
SchI GAGTC 3 cut(s) 1506, 1519, 1622
ScrFI CCNGG 2 cut(s) 378, 753
SduI GDGCHC 2 cut(s) 1086, 1396
SfaNI GCATC 5 cut(s) 640, 725, 827, 1203, 1309
SfcI CTRYAG 2 cut(s) 171, 1057
Sfr274I CTCGAG 1 cut(s) 569
SinI GGWCC 4 cut(s) 255, 1037, 1062, 1554
SlaI CTCGAG 1 cut(s) 569
SmiMI CAYNNNNRTG 3 cut(s) 1091, 1130, 1572
SmlI CTYRAG 2 cut(s) 55, 569
SmoI CTYRAG 2 cut(s) 55, 569
Sse9I AATT 6 cut(s) 13, 873, 920, 992, 1352, 1386
SsiI CCGC 7 cut(s) 52, 927, 1013, 1191, 1239, 1449, 1552
SspMI CTAG 4 cut(s) 183, 900, 1202, 1374
StyD4I CCNGG 2 cut(s) 376, 751
StyI CCWWGG 3 cut(s) 88, 418, 894
TaaI ACNGT 5 cut(s) 640, 646, 835, 1118, 1336
TaiI ACGT 2 cut(s) 1006, 1261
TaqI TCGA 5 cut(s) 570, 1211, 1224, 1300, 1327
TaqII GACCGA 1 cut(s) 272
TasI AATT 6 cut(s) 13, 873, 920, 992, 1352, 1386
TatI WGTACW 1 cut(s) 862
TauI GCSGC 2 cut(s) 929, 1016
TfiI GAWTC 6 cut(s) 278, 308, 598, 725, 1370, 1619
Tru1I TTAA 3 cut(s) 144, 165, 1098
Tru9I TTAA 3 cut(s) 144, 165, 1098
TscAI CASTG 6 cut(s) 180, 645, 774, 817, 838, 1051
TseFI GTSAC 4 cut(s) 640, 686, 1112, 1565
TseI GCWGC 4 cut(s) 170, 302, 482, 1216
Tsp45I GTSAC 4 cut(s) 640, 686, 1112, 1565
TspDTI ATGAA 6 cut(s) 462, 477, 569, 1130, 1281, 1442
TspGWI ACGGA 2 cut(s) 228, 1089
TspRI CASTG 6 cut(s) 180, 645, 774, 817, 838, 1051
Van91I CCANNNNNTGG 2 cut(s) 329, 377
VneI GTGCAC 1 cut(s) 1392
VpaK11BI GGWCC 4 cut(s) 255, 1037, 1062, 1554
XapI RAATTY 1 cut(s) 920
XbaI TCTAGA 2 cut(s) 182, 1373
XceI RCATGY 1 cut(s) 1573
XhoI CTCGAG 1 cut(s) 569
XspI CTAG 4 cut(s) 183, 900, 1202, 1374
ZrmI AGTACT 1 cut(s) 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.