Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012821

Physical Location & Seq

Genomic Coordinates Reverse (-)

23818148 .. 23827615

Gene Structure 9468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017969

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2472 bp

ATGAAGGAACGTGGAAATTCTTCTATAAAACCTCGAGATTTACCCAATCAAGATGTGATCCTGCCCAAGTCCCTCAAGCTCCTATACCGTTATGCTGAGCGTGCCATGATGGATGGTGAGCCTATCAGTGTCTTTATGGAAGAAGCCGTATTTGGTATTGCCAAGACTCTCAACATTTTCAAAGAAGATGTTATGCAATTTATGGAAATGAAGGAAATCCCCCCTAGGTGCATAACAGTGTACATGAGGCACCTCTATGATATGCTAAAGCAATCCAACATGGCCAATATGGTTGGTTTGATGGACCCTTCAAGCATATCAGTTGGTGAAGGCAATTCTGACCACAAATCACAGGTGCTCGCAACCCGGTTGCAGCAAGGGTCTGCTGACCAAATACTTTTGGTACCTTACAATTCTGGTTATCATTGGATGCTGACCATCATCAGTGAAGACAAAGAAGTATGCTACTTCATGGACCCTCTTCAACGCTACTTCATGGACCCTCTCCGAAGAAGCATGCGTGAGGAAGAATGGAAATATGTTGTAAACAATGGGATTAGACAATTCAACATTGAAACGGGTAGGGGATTCCGAAGACAACCTCTATGGAAAGTATTGATGAACATTTTAGTTCTTGTTTTGGATTCTTATTGCCTTTTCTGGTGTACATCATCAGAGTGGGATGGGAGGAAGCTAAATGCCTACACACAGACAGAGCTGGATGAGGTGAGGTGCGAGTGGACGGACTTTGTCACCTCCTATGCTGCTATAACAGACTCGTCTTCTTCTTCTTTCTTCATTTTCTCTTCTTCTTCTCTTCTTCTTTGGAGGTTTGGTGAGACAACACAGACGCAGCAAATGGCTTCTATCAACCTCTATTGCTCCCCAACGGCTCTCTTCCCTTCTCAAAGGAACAATTGTTTATATCCCGGGACTTCGGTTAAGCCAAATGGGTGCGTATCTGATTTTGTTGCACCGAGTTTGACTCGGAAGTTGTGCTTTGGTTTGAGGGGTGATTTCCAGGCAAGGGCTATGGTGATATCTGGAGAAGATGATCTCCTGTCTCACACTAATGGGGTTGAAGCACAACCTGACGCATTGAGTTTTGGAACACTTGCAGCTGATATGGCTCCTCTTAGTAGCGGTTTCTCTTCTGATAACGATGAATACGATCTAGATTATCCTATTGAAGGATTTTCTTCCATTGCGGAGGCCATTGAAGATATTCGTCAAGGCAAGATGGTAATTGTTGTAGATGATGAAGATAGAGAAAACGAGGGAGATCTTATAATGGCAGCATCCTTGGCAACACCAGAAGCTATGGCTTTTATTGTCAAGCACGGAACCGGAATTGTTTGTGTGAGCATGAAAGGAGAAGACTTGGAAAGGTTACAACTTCCGTTGATGGTGACACAGAATGAAGAAAAACTTTGTACAGCATTCACTGTCTCAGTGGATGCAAAACATGGTACGACAACTGGTGTTTCAGCTCGCGATAGAGCTGCAACAGTCTTGGCCCTTGCATCAAGGGATTCAAAACCTGAAGACTTCAACCGACCAGGTCATATCTTTCCCCTAAAGTACAGGGAGGGAGGAGTTCTAAAAAGAGCTGGGCACACGGAAGCTTCAGTTGATCTCGCAATGTTGGCTGGGCTAGATCCGATAGCAGTTTTGTGTGAAATTGTGGATGATGACGGTTCTATGGCTAGATTACCGAGGCTTCGTGAATTTGCAAAGGCTGAAAACTTGAAAATTATTTCTATTGCTGATTTGATAAGATATAGGAGAAAAAGGGACAAGTTGGTGGAGCGGGCTGGAGCTGCACGGATACCCACAATGTGGGGGCCATTTGAAGCCTACTGTTATAGGTCATTGCTAGATGGGATTGAGCACATTGCTATGGTTAAAGGTGATATTGGAGATGGGCAAAATATACTTGTGAGAGTACATTCAGAGTGTCTCACCGGTGACATCTTTGGGTCGGCCAGATGTGATTGTGGAAACCAGCTGGCACTTGCTATGAAACAAATTGAAGCAGCGGGTAGGGGTGTTTTAGTGTATCTCCGTGGACATGAAGGTAGAGGAATTGGTTTAGGCCACAAGCTCCGAGCTTATAACCTGCAGGATGATGGGCGTGACACTGTTGAAGCCAACGAGGAGCTCGGACTACCTGTTGATTCTCGCGAGTATGGAATAGGTGCACAGATACTACGAGATCTAGGTGTTCGTACAATGAAGCTGATGACTAACAATCCTGCAAAGTATAGCGGGCTCAAAGGTTATGGTTTGGCCGTTGCTGGCAGGGTCCCGTTATTGACACCAATAACTATGGAGAACAAGAGATATTTGGAGACTAAACGAACGAAAATGGGGCATGTCTATGGCTCCAATCTCAATGGTCATGTAGATGGCGCCAGTGATGAAAGCATTTCAAGCATTGGCAACCCATCTAATGGTGTCTCTGAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0008686 GO:0009058 GO:0009110 GO:0009231 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0016830 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko00790 ko01100 ko01110 map00740 map00790 map01100 map01110

Pfam Domains

Protein Families

DHBP_synthase GTP_cyclohydro2

Protein Analysis

824

Amino Acids

91.47

Weight (kDa)

5.39

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHBP_synthase	PF00926	404 - 594	1.8e-87	3,4-dihydroxy-2-butanone 4-phosphate synthase
GTP_cyclohydro2	PF00925	605 - 770	3.3e-71	GTP cyclohydrolase II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64300
fragaria_vesca	FvH4_1g20220 FvH4_1g20220 FvH4_1g20220 FvH4_1g20220
malus_domestica	MD01G1036500.v1.1
prunus_persica	Prupe.6G193700_v2.0.a1 Prupe.6G193700_v2.0.a1
pyrus_communis	pycom01g06320 pycom15g28070
rosa_chinensis	RchiOBHm_Chr2g0112291
rosa_laevigata	RLG00000017969
rosa_roxburghii	Rroxscaffold_2G00131530
rosa_samantha	Rh2AG232400 Rh2BG245800 Rh2CG236600 Rh2DG240100
rosa_wichuraiana	Rw2G018030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1289, 2115
Acc36I	ACCTGC	1 cut(s)	2127
Acc65I	GGTACC	1 cut(s)	403
AccB1I	GGYRCC	3 cut(s)	249, 403, 2411
AccB7I	CCANNNNNTGG	2 cut(s)	1839, 2453
AccBSI	CCGCTC	1 cut(s)	1810
AccII	CGCG	2 cut(s)	1494, 2184
AciI	CCGC	5 cut(s)	1143, 1208, 1810, 2039, 2268
AclWI	GGATC	2 cut(s)	52, 1652
AcoI	YGGCCR	3 cut(s)	282, 1983, 2289
AcsI	RAATTY	2 cut(s)	16, 1727
AcuI	CTGAAG	2 cut(s)	1563, 1611
AcyI	GRCGYC	1 cut(s)	2412
AdeI	CACNNNGTG	1 cut(s)	1839
AfaI	GTAC	8 cut(s)	242, 405, 667, 1435, 1471, 1583, 1947, 2230
AfiI	CCNNNNNNNGG	4 cut(s)	1027, 1190, 1839, 2453
AgeI	ACCGGT	1 cut(s)	1964
AjnI	CCWGG	2 cut(s)	1020, 1558
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
Alw21I	GWGCWC	4 cut(s)	360, 1893, 2163, 2203
Alw26I	GTCTC	7 cut(s)	833, 1068, 1453, 1964, 2345, 2459, 2464
Alw44I	GTGCAC	1 cut(s)	2199
AlwI	GGATC	2 cut(s)	52, 1652
Ama87I	CYCGRG	2 cut(s)	33, 929
AoxI	GGCC	7 cut(s)	282, 1212, 1515, 1844, 1983, 2095, 2289
ApaLI	GTGCAC	1 cut(s)	2199
ApeKI	GCWGC	8 cut(s)	373, 764, 853, 1118, 1295, 1502, 1820, 2036
ApoI	RAATTY	2 cut(s)	16, 1727
AsiGI	ACCGGT	1 cut(s)	1964
Asp700I	GAANNNNTTC	2 cut(s)	19, 1224
Asp718I	GGTACC	1 cut(s)	403
AspA2I	CCTAGG	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	2414
AspS9I	GGNCC	6 cut(s)	304, 475, 499, 1516, 1844, 2305
AsuC2I	CCSGG	3 cut(s)	367, 930, 931
AvaI	CYCGRG	2 cut(s)	33, 929
AvaII	GGWCC	4 cut(s)	304, 475, 499, 2305
AvrII	CCTAGG	1 cut(s)	224
BaeGI	GKGCMC	2 cut(s)	1617, 2203
BalI	TGGCCA	1 cut(s)	284
BanI	GGYRCC	3 cut(s)	249, 403, 2411
BanII	GRGCYC	2 cut(s)	2163, 2274
BbsI	GAAGAC	5 cut(s)	456, 601, 774, 1383, 1551
Bbv12I	GWGCWC	4 cut(s)	360, 1893, 2163, 2203
BbvI	GCAGC	8 cut(s)	385, 751, 865, 1130, 1307, 1489, 1807, 2048
BceAI	ACGGC	3 cut(s)	131, 906, 2276
BcgI	CGANNNNNNTGC	2 cut(s)	1484, 1518
BciT130I	CCWGG	2 cut(s)	1022, 1560
BciVI	GTATCC	1 cut(s)	1821
BcnI	CCSGG	3 cut(s)	367, 930, 931
BcoDI	GTCTC	7 cut(s)	833, 1068, 1453, 1964, 2345, 2459, 2464
BfaI	CTAG	6 cut(s)	225, 1175, 1655, 1707, 1877, 2219
BfmI	CTRYAG	1 cut(s)	2120
BfoI	RGCGCY	1 cut(s)	2415
BfuAI	ACCTGC	1 cut(s)	2127
BfuI	GTATCC	1 cut(s)	1821
BglII	AGATCT	2 cut(s)	1282, 2215
BisI	GCNGC	8 cut(s)	374, 765, 854, 1119, 1296, 1503, 1821, 2037
BlnI	CCTAGG	1 cut(s)	224
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	8 cut(s)	375, 766, 855, 1120, 1297, 1504, 1822, 2038
Bme1390I	CCNGG	5 cut(s)	367, 930, 931, 1022, 1560
Bme18I	GGWCC	4 cut(s)	304, 475, 499, 2305
BmeT110I	CYCGRG	2 cut(s)	33, 929
BmgT120I	GGNCC	6 cut(s)	304, 475, 499, 1516, 1844, 2305
BmrFI	CCNGG	5 cut(s)	367, 930, 931, 1022, 1560
BmsI	GCATC	4 cut(s)	420, 1307, 1447, 1532
BpiI	GAAGAC	5 cut(s)	456, 601, 774, 1383, 1551
BplI	GAGNNNNNCTC	2 cut(s)	970, 1002
BpmI	CTGGAG	2 cut(s)	1065, 1836
Bpu1102I	GCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	59
BpuMI	CCSGG	3 cut(s)	367, 930, 931
BsaHI	GRCGYC	1 cut(s)	2412
BsaJI	CCNNGG	5 cut(s)	224, 929, 1302, 1715, 2065
BsaWI	WCCGGW	2 cut(s)	1346, 1964
BsaXI	ACNNNNNCTCC	2 cut(s)	820, 850
Bsc4I	CCNNNNNNNGG	4 cut(s)	1027, 1190, 1839, 2453
Bse118I	RCCGGY	1 cut(s)	1964
Bse1I	ACTGG	2 cut(s)	1483, 2415
Bse3DI	GCAATG	4 cut(s)	1203, 1647, 1871, 1893
BseBI	CCWGG	2 cut(s)	1022, 1560
BseDI	CCNNGG	5 cut(s)	224, 929, 1302, 1715, 2065
BseGI	GGATG	8 cut(s)	118, 435, 688, 727, 1298, 1462, 1693, 2131
BseLI	CCNNNNNNNGG	4 cut(s)	1027, 1190, 1839, 2453
BseMI	GCAATG	4 cut(s)	1203, 1647, 1871, 1893
BseMII	CTCAG	3 cut(s)	87, 1464, 2454
BseNI	ACTGG	2 cut(s)	1483, 2415
BseRI	GAGGAG	3 cut(s)	1122, 1608, 2171
BseSI	GKGCMC	2 cut(s)	1617, 2203
BseXI	GCAGC	8 cut(s)	385, 751, 865, 1130, 1307, 1489, 1807, 2048
BseYI	CCCAGC	2 cut(s)	1610, 1649
BsgI	GTGCAG	1 cut(s)	1806
Bsh1236I	CGCG	2 cut(s)	1494, 2184
BshFI	GGCC	7 cut(s)	284, 1214, 1517, 1846, 1985, 2097, 2291
BshNI	GGYRCC	3 cut(s)	249, 403, 2411
BshTI	ACCGGT	1 cut(s)	1964
BsiHKAI	GWGCWC	4 cut(s)	360, 1893, 2163, 2203
BsiHKCI	CYCGRG	2 cut(s)	33, 929
BsiSI	CCGG	4 cut(s)	367, 930, 1347, 1965
BslFI	GGGAC	4 cut(s)	55, 946, 1808, 2291
BslI	CCNNNNNNNGG	4 cut(s)	1027, 1190, 1839, 2453
BsmAI	GTCTC	7 cut(s)	833, 1068, 1453, 1964, 2345, 2459, 2464
BsmFI	GGGAC	4 cut(s)	55, 946, 1808, 2291
BsmI	GAATGC	1 cut(s)	1439
BsnI	GGCC	7 cut(s)	284, 1214, 1517, 1846, 1985, 2097, 2291
BsoBI	CYCGRG	2 cut(s)	33, 929
Bsp1286I	GDGCHC	6 cut(s)	360, 1617, 1893, 2163, 2203, 2274
Bsp1407I	TGTACA	3 cut(s)	240, 665, 1433
Bsp143I	GATC	7 cut(s)	57, 1054, 1171, 1282, 1633, 1657, 2215
Bsp1720I	GCTNAGC	1 cut(s)	96
Bsp68I	TCGCGA	2 cut(s)	1494, 2184
BspACI	CCGC	5 cut(s)	1143, 1208, 1810, 2039, 2268
BspANI	GGCC	7 cut(s)	284, 1214, 1517, 1846, 1985, 2097, 2291
BspCNI	CTCAG	3 cut(s)	88, 1463, 2455
BspFNI	CGCG	2 cut(s)	1494, 2184
BspMAI	CTGCAG	1 cut(s)	2124
BspMI	ACCTGC	1 cut(s)	2127
BspPI	GGATC	2 cut(s)	52, 1652
BspT107I	GGYRCC	3 cut(s)	249, 403, 2411
BsrBI	CCGCTC	1 cut(s)	1810
BsrDI	GCAATG	4 cut(s)	1203, 1647, 1871, 1893
BsrFI	RCCGGY	1 cut(s)	1964
BsrGI	TGTACA	3 cut(s)	240, 665, 1433
BsrI	ACTGG	2 cut(s)	1483, 2415
BssAI	RCCGGY	1 cut(s)	1964
BssECI	CCNNGG	5 cut(s)	224, 929, 1302, 1715, 2065
BssMI	GATC	7 cut(s)	57, 1054, 1171, 1282, 1633, 1657, 2215
BssNI	GRCGYC	1 cut(s)	2412
BssT1I	CCWWGG	2 cut(s)	224, 1302
Bst2UI	CCWGG	2 cut(s)	1022, 1560
Bst4CI	ACNGT	7 cut(s)	89, 238, 1447, 1510, 1697, 1862, 2143
Bst6I	CTCTTC	5 cut(s)	486, 811, 822, 902, 1156
BstACI	GRCGYC	1 cut(s)	2412
BstAUI	TGTACA	3 cut(s)	240, 665, 1433
BstC8I	GCNNGC	8 cut(s)	102, 360, 518, 1492, 1812, 2010, 2270, 2299
BstDEI	CTNAG	4 cut(s)	96, 1136, 1450, 2463
BstDSI	CCRYGG	1 cut(s)	2065
BstENI	CCTNNNNNAGG	1 cut(s)	1188
BstF5I	GGATG	8 cut(s)	118, 435, 688, 727, 1298, 1462, 1693, 2131
BstFNI	CGCG	2 cut(s)	1494, 2184
BstH2I	RGCGCY	1 cut(s)	2415
BstHHI	GCGC	1 cut(s)	2414
BstKTI	GATC	7 cut(s)	60, 1057, 1174, 1285, 1636, 1660, 2218
BstMAI	GTCTC	7 cut(s)	833, 1068, 1453, 1964, 2345, 2459, 2464
BstMBI	GATC	7 cut(s)	57, 1054, 1171, 1282, 1633, 1657, 2215
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 1127, 1304, 1646, 1820, 2433
BstNI	CCWGG	2 cut(s)	1022, 1560
BstNSI	RCATGY	2 cut(s)	520, 2378
BstSCI	CCNGG	5 cut(s)	365, 928, 929, 1020, 1558
BstSFI	CTRYAG	1 cut(s)	2120
BstSLI	GKGCMC	2 cut(s)	1617, 2203
BstUI	CGCG	2 cut(s)	1494, 2184
BstV1I	GCAGC	8 cut(s)	385, 751, 865, 1130, 1307, 1489, 1807, 2048
BstV2I	GAAGAC	5 cut(s)	456, 601, 774, 1383, 1551
BstX2I	RGATCY	3 cut(s)	1282, 1657, 2215
BstYI	RGATCY	3 cut(s)	1282, 1657, 2215
BsuI	GTATCC	1 cut(s)	1821
BsuRI	GGCC	7 cut(s)	284, 1214, 1517, 1846, 1985, 2097, 2291
BtgI	CCRYGG	1 cut(s)	2065
BtsCI	GGATG	8 cut(s)	118, 435, 688, 727, 1298, 1462, 1693, 2131
BtsIMutI	CAGTG	7 cut(s)	133, 243, 451, 1443, 1458, 2139, 2422
BtuMI	TCGCGA	2 cut(s)	1494, 2184
BveI	ACCTGC	1 cut(s)	2127
Cac8I	GCNNGC	8 cut(s)	102, 360, 518, 1492, 1812, 2010, 2270, 2299
CfoI	GCGC	1 cut(s)	2414
Cfr10I	RCCGGY	1 cut(s)	1964
Cfr13I	GGNCC	6 cut(s)	304, 475, 499, 1516, 1844, 2305
Cfr9I	CCCGGG	1 cut(s)	929
CseI	GACGC	2 cut(s)	859, 1103
CsiI	ACCWGGT	1 cut(s)	1558
Csp6I	GTAC	8 cut(s)	241, 404, 666, 1434, 1470, 1582, 1946, 2229
CspAI	ACCGGT	1 cut(s)	1964
CviQI	GTAC	8 cut(s)	241, 404, 666, 1434, 1470, 1582, 1946, 2229
DdeI	CTNAG	4 cut(s)	96, 1136, 1450, 2463
DinI	GGCGCC	1 cut(s)	2413
DpnI	GATC	7 cut(s)	59, 1056, 1173, 1284, 1635, 1659, 2217
DpnII	GATC	7 cut(s)	57, 1054, 1171, 1282, 1633, 1657, 2215
DraIII	CACNNNGTG	1 cut(s)	1839
EaeI	YGGCCR	3 cut(s)	282, 1983, 2289
Eam1104I	CTCTTC	5 cut(s)	486, 811, 822, 902, 1156
EarI	CTCTTC	5 cut(s)	486, 811, 822, 902, 1156
Ecl136II	GAGCTC	1 cut(s)	2161
Eco130I	CCWWGG	2 cut(s)	224, 1302
Eco24I	GRGCYC	2 cut(s)	2163, 2274
Eco32I	GATATC	1 cut(s)	1041
Eco47I	GGWCC	4 cut(s)	304, 475, 499, 2305
Eco53kI	GAGCTC	1 cut(s)	2161
Eco57I	CTGAAG	2 cut(s)	1563, 1611
Eco88I	CYCGRG	2 cut(s)	33, 929
EcoICRI	GAGCTC	1 cut(s)	2161
EcoNI	CCTNNNNNAGG	1 cut(s)	1188
EcoO109I	RGGNCCY	1 cut(s)	2305
EcoRII	CCWGG	2 cut(s)	1020, 1558
EcoRV	GATATC	1 cut(s)	1041
EcoT14I	CCWWGG	2 cut(s)	224, 1302
EcoT38I	GRGCYC	2 cut(s)	2163, 2274
EgeI	GGCGCC	1 cut(s)	2413
EheI	GGCGCC	1 cut(s)	2413
ErhI	CCWWGG	2 cut(s)	224, 1302
FalI	AAGNNNNNCTT	4 cut(s)	983, 1015, 1413, 1445
FaqI	GGGAC	4 cut(s)	55, 946, 1808, 2291
FauI	CCCGC	3 cut(s)	1803, 2032, 2261
Fnu4HI	GCNGC	8 cut(s)	374, 765, 854, 1119, 1296, 1503, 1821, 2037
FokI	GGATG	8 cut(s)	125, 442, 695, 734, 1285, 1469, 1700, 2138
FriOI	GRGCYC	2 cut(s)	2163, 2274
Fsp4HI	GCNGC	8 cut(s)	374, 765, 854, 1119, 1296, 1503, 1821, 2037
FspBI	CTAG	6 cut(s)	225, 1175, 1655, 1707, 1877, 2219
GlaI	GCGC	1 cut(s)	2413
GluI	GCNGC	8 cut(s)	374, 765, 854, 1119, 1296, 1503, 1821, 2037
GsaI	CCCAGC	2 cut(s)	1614, 1653
GsuI	CTGGAG	2 cut(s)	1065, 1836
HaeII	RGCGCY	1 cut(s)	2415
HaeIII	GGCC	7 cut(s)	284, 1214, 1517, 1846, 1985, 2097, 2291
HapII	CCGG	4 cut(s)	367, 930, 1347, 1965
HgaI	GACGC	2 cut(s)	859, 1103
HhaI	GCGC	1 cut(s)	2414
Hin1I	GRCGYC	1 cut(s)	2412
Hin6I	GCGC	1 cut(s)	2412
HinP1I	GCGC	1 cut(s)	2412
HindIII	AAGCTT	1 cut(s)	1623
HinfI	GANTC	7 cut(s)	166, 588, 644, 776, 985, 1532, 2177
HpaII	CCGG	4 cut(s)	367, 930, 1347, 1965
Hpy166II	GTNNAC	6 cut(s)	241, 547, 666, 741, 2069, 2201
Hpy188III	TCNNGA	7 cut(s)	35, 50, 1044, 1175, 1493, 1724, 2183
Hpy8I	GTNNAC	6 cut(s)	241, 547, 666, 741, 2069, 2201
HpyAV	CCTTC	6 cut(s)	205, 318, 323, 912, 1184, 2069
HpyCH4III	ACNGT	7 cut(s)	89, 238, 1447, 1510, 1697, 1862, 2143
HpyCH4IV	ACGT	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 1127, 1304, 1646, 1820, 2433
HpyF3I	CTNAG	4 cut(s)	96, 1136, 1450, 2463
HpySE526I	ACGT	1 cut(s)	10
Hsp92I	GRCGYC	1 cut(s)	2412
HspAI	GCGC	1 cut(s)	2412
KasI	GGCGCC	1 cut(s)	2411
KflI	GGGWCCC	1 cut(s)	2305
KpnI	GGTACC	1 cut(s)	407
Kzo9I	GATC	7 cut(s)	57, 1054, 1171, 1282, 1633, 1657, 2215
LmnI	GCTCC	8 cut(s)	84, 887, 1135, 1807, 1817, 2109, 2158, 2390
Lsp1109I	GCAGC	8 cut(s)	385, 751, 865, 1130, 1307, 1489, 1807, 2048
LweI	GCATC	4 cut(s)	420, 1307, 1447, 1532
MabI	ACCWGGT	1 cut(s)	1558
MaeI	CTAG	6 cut(s)	225, 1175, 1655, 1707, 1877, 2219
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	5 cut(s)	751, 1389, 1408, 1967, 2135
MalI	GATC	7 cut(s)	59, 1056, 1173, 1284, 1635, 1659, 2217
MbiI	CCGCTC	1 cut(s)	1810
MboI	GATC	7 cut(s)	57, 1054, 1171, 1282, 1633, 1657, 2215
MfeI	CAATTG	1 cut(s)	916
MflI	RGATCY	3 cut(s)	1282, 1657, 2215
MhlI	GDGCHC	6 cut(s)	360, 1617, 1893, 2163, 2203, 2274
MlsI	TGGCCA	1 cut(s)	284
MluNI	TGGCCA	1 cut(s)	284
Mly113I	GGCGCC	1 cut(s)	2412
MlyI	GAGTC	3 cut(s)	160, 770, 979
MmeI	TCCRAC	1 cut(s)	300
Mox20I	TGGCCA	1 cut(s)	284
MroXI	GAANNNNTTC	2 cut(s)	19, 1224
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	2 cut(s)	942, 1905
MslI	CAYNNNNRTG	7 cut(s)	236, 255, 676, 1071, 1898, 2379, 2406
Msp20I	TGGCCA	1 cut(s)	284
MspA1I	CMGCKG	3 cut(s)	1121, 2008, 2039
MspI	CCGG	4 cut(s)	367, 930, 1347, 1965
MspR9I	CCNGG	5 cut(s)	367, 930, 931, 1022, 1560
MunI	CAATTG	1 cut(s)	916
Mva1269I	GAATGC	1 cut(s)	1439
MvaI	CCWGG	2 cut(s)	1022, 1560
MvnI	CGCG	2 cut(s)	1494, 2184
MwoI	GCNNNNNNNGC	6 cut(s)	101, 1127, 1304, 1646, 1820, 2433
NarI	GGCGCC	1 cut(s)	2412
NciI	CCSGG	3 cut(s)	367, 930, 931
NdeII	GATC	7 cut(s)	57, 1054, 1171, 1282, 1633, 1657, 2215
NmuCI	GTSAC	4 cut(s)	751, 1408, 1967, 2135
NruI	TCGCGA	2 cut(s)	1494, 2184
NspI	RCATGY	2 cut(s)	520, 2378
PaeI	GCATGC	1 cut(s)	520
PaeR7I	CTCGAG	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	1167
PctI	GAATGC	1 cut(s)	1439
PdmI	GAANNNNTTC	2 cut(s)	19, 1224
PfeI	GAWTC	4 cut(s)	588, 644, 1532, 2177
PflFI	GACNNNGTC	2 cut(s)	749, 1560
PflMI	CCANNNNNTGG	2 cut(s)	1839, 2453
PinAI	ACCGGT	1 cut(s)	1964
PkrI	GCNGC	8 cut(s)	375, 766, 855, 1120, 1297, 1504, 1822, 2038
PleI	GAGTC	3 cut(s)	160, 770, 979
PluTI	GGCGCC	1 cut(s)	2415
PpsI	GAGTC	3 cut(s)	160, 770, 979
PpuMI	RGGWCCY	1 cut(s)	2305
PsiI	TTATAA	2 cut(s)	1289, 2115
Psp124BI	GAGCTC	1 cut(s)	2163
Psp5II	RGGWCCY	1 cut(s)	2305
Psp6I	CCWGG	2 cut(s)	1020, 1558
PspFI	CCCAGC	2 cut(s)	1610, 1649
PspGI	CCWGG	2 cut(s)	1020, 1558
PspPI	GGNCC	6 cut(s)	304, 475, 499, 1516, 1844, 2305
PspPPI	RGGWCCY	1 cut(s)	2305
PstI	CTGCAG	1 cut(s)	2124
PsuI	RGATCY	3 cut(s)	1282, 1657, 2215
PsyI	GACNNNGTC	2 cut(s)	749, 1560
PvuII	CAGCTG	2 cut(s)	1121, 2008
RruI	TCGCGA	2 cut(s)	1494, 2184
RsaI	GTAC	8 cut(s)	242, 405, 667, 1435, 1471, 1583, 1947, 2230
RsaNI	GTAC	8 cut(s)	241, 404, 666, 1434, 1470, 1582, 1946, 2229
RseI	CAYNNNNRTG	7 cut(s)	236, 255, 676, 1071, 1898, 2379, 2406
SacI	GAGCTC	1 cut(s)	2163
SaqAI	TTAA	2 cut(s)	942, 1905
SatI	GCNGC	8 cut(s)	374, 765, 854, 1119, 1296, 1503, 1821, 2037
Sau3AI	GATC	7 cut(s)	57, 1054, 1171, 1282, 1633, 1657, 2215
Sau96I	GGNCC	6 cut(s)	304, 475, 499, 1516, 1844, 2305
SbfI	CCTGCAGG	1 cut(s)	2124
SchI	GAGTC	3 cut(s)	160, 770, 979
ScrFI	CCNGG	5 cut(s)	367, 930, 931, 1022, 1560
SdaI	CCTGCAGG	1 cut(s)	2124
SduI	GDGCHC	6 cut(s)	360, 1617, 1893, 2163, 2203, 2274
SexAI	ACCWGGT	1 cut(s)	1558
SfaNI	GCATC	4 cut(s)	420, 1307, 1447, 1532
SfcI	CTRYAG	1 cut(s)	2120
SfoI	GGCGCC	1 cut(s)	2413
Sfr274I	CTCGAG	1 cut(s)	33
SgrAI	CRCCGGYG	1 cut(s)	1964
SinI	GGWCC	4 cut(s)	304, 475, 499, 2305
SlaI	CTCGAG	1 cut(s)	33
SmaI	CCCGGG	1 cut(s)	931
SmiMI	CAYNNNNRTG	7 cut(s)	236, 255, 676, 1071, 1898, 2379, 2406
SmlI	CTYRAG	2 cut(s)	33, 74
SmoI	CTYRAG	2 cut(s)	33, 74
SphI	GCATGC	1 cut(s)	520
Sse8387I	CCTGCAGG	1 cut(s)	2124
SsiI	CCGC	5 cut(s)	1143, 1208, 1810, 2039, 2268
SspDI	GGCGCC	1 cut(s)	2411
SspMI	CTAG	6 cut(s)	225, 1175, 1655, 1707, 1877, 2219
SstI	GAGCTC	1 cut(s)	2163
StyD4I	CCNGG	5 cut(s)	365, 928, 929, 1020, 1558
StyI	CCWWGG	2 cut(s)	224, 1302
TaaI	ACNGT	7 cut(s)	89, 238, 1447, 1510, 1697, 1862, 2143
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	1 cut(s)	34
TatI	WGTACW	5 cut(s)	240, 665, 1433, 1581, 1945
TfiI	GAWTC	4 cut(s)	588, 644, 1532, 2177
Tru1I	TTAA	2 cut(s)	942, 1905
Tru9I	TTAA	2 cut(s)	942, 1905
TscAI	CASTG	7 cut(s)	133, 243, 451, 1450, 1458, 2146, 2422
TseFI	GTSAC	4 cut(s)	751, 1408, 1967, 2135
TseI	GCWGC	8 cut(s)	373, 764, 853, 1118, 1295, 1502, 1820, 2036
Tsp45I	GTSAC	4 cut(s)	751, 1408, 1967, 2135
TspGWI	ACGGA	6 cut(s)	758, 1356, 1389, 1634, 1840, 2054
TspMI	CCCGGG	1 cut(s)	929
TspRI	CASTG	7 cut(s)	133, 243, 451, 1450, 1458, 2146, 2422
Tth111I	GACNNNGTC	2 cut(s)	749, 1560
Van91I	CCANNNNNTGG	2 cut(s)	1839, 2453
VneI	GTGCAC	1 cut(s)	2199
VpaK11BI	GGWCC	4 cut(s)	304, 475, 499, 2305
XagI	CCTNNNNNAGG	1 cut(s)	1188
XapI	RAATTY	2 cut(s)	16, 1727
XbaI	TCTAGA	1 cut(s)	1174
XceI	RCATGY	2 cut(s)	520, 2378
XhoI	CTCGAG	1 cut(s)	33
XmaI	CCCGGG	1 cut(s)	929
XmaJI	CCTAGG	1 cut(s)	224
XmnI	GAANNNNTTC	2 cut(s)	19, 1224
XspI	CTAG	6 cut(s)	225, 1175, 1655, 1707, 1877, 2219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.