pycom01g06320

3,4-dihydroxy-2-butanone 4-phosphate synthase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
6558105 .. 6563809
5705 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g06320.6

Sequence Viewer

Length: 1620 bp
ATGGCTTCCATCAACCCCTATTGCTCCTCAAAGGCTCTTTCCCCTTATCCAGGGTACACTATTCTATATCCTGGGACTTCACTTGCAGCAAATGGGCAATTATCCGGTTTTTTCACACCGAGTGTATCATGGAAATTGTGCTTTCATTCCAAGGGATCAATTAAGGCAAGAGCTTTGCTGGGAGAAGATGGTCTCCTGTCTTACCCAAATGGCAACCCAACTGGGAGTGAAATACAACCTGATGCATTAGGTTTTGGAACACTTTCAGCAGAAACAACCCCAACGTTTAGTGGGTTCTCTTCTGAAAATGATGAAGGTGATCTAGATCACCCTATACACGGATTTTCTTCCATTCCAGAGGCCATTGAAGATATACGTCAAGGCAAGATGGTTATCGTTGTAGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGGCAGCTTCCTTGGCAACACCAGAAGCTATGGCATTTATTGTCAAGCACGGAACTGGGATTGTTTGTGTGAGCATGAAAGGAGAAGACTTGGAGAGGTTGCAACTTCCACTTATGGTGACACAGAATGAAGAAAAACTTTGTACAGCATTCACTGTCTCAGTGGATGCAAAACGTGGTACAACAACTGGTGTTTCTGCTCGTGATAGAGCTGCAACAGTCTTGGCTCTTGCATCAAGAGATTCAACACCTGAAGATTTCAACCGCCCAGGACATATCTTTCCCCTAAAGTACAGAGAGGGAGGAGTTCTAAAAAGAGCCGGTCACACCGAAGCTTCAGTTGATCTTTCTATGTTGGCTGGGCTGGATCCAGTAGCAGTTTTATGTGAAATTGTGGATGATGACGGTTCTATGGCTAGGTTACCAAAGCTTCTCGAATTTGCAAGGGCAGAAAACTTGAAAATTGTTTCCATCGCTGATTTGATAAGATATAGAAGGAAAAGAGATAAGTTGGTGGAGAGGGCCGGAGTTGCACAAATACCCACAATGTGGGGGCCATTTGAAGCCTACTGTTATAAATCATTGCTCGATGGGATTGAGCACATTGCTATGGTTAAAGGTGAAATTGCTGACGGGCAAGAAATACTTGTGAGGGTACACTCTGAGTGCCTCACTGGTGACATATTTGGGTCAGCCAGATGTGACTGTGGAAACCAGCTTGCACTTGCAATGAAGCAAATTGAAGCAGCTGGTAGGGGTGTTTTGGTGTATCTCCGTGGACATGAAGGTAGAGGAATTGGTTTGGGTCACAAGCTCCGAGCTTATACACTGCAGGATGCTGGGCGTGACACTGTTGAAGCCAATGAGGAGCTGGGATTACCTGTTGATTCTCGCGAGTATGGCATAGGTGCACAGATACTACGAGATCTAGGTGTTCGAACAATGAAGCTGATGACGAACAATCCTGCAAAATATATTGGTCTCAAGGGTTATGGTTTGGCCATTGCTGGCAGAGTCCCATTGTTGGCACCGATAACTATGGAGAACCAGAAATACTTGGAGACTAAACGGGCAAAAATGGGGCACATCTACGGTTCAAAATCTAATGGTCATGTAAACGGCACAATCGATGAAAGTAGTTCGAAAATTGACAACCAATCTAATGGTGTGTCCGAGACATGA

Protein Analysis

540

Amino Acids

58.11

Weight (kDa)

5.58

Isoelectric Point (pI)

30.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012821)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 437, 1014
AccB1I GGYRCC 1 cut(s) 1465
AccB7I CCANNNNNTGG 1 cut(s) 987
AccII CGCG 1 cut(s) 1332
AciI CCGC 1 cut(s) 703
AclI AACGTT 1 cut(s) 284
AclWI GGATC 3 cut(s) 163, 800, 813
AcoI YGGCCR 1 cut(s) 1437
AcsI RAATTY 1 cut(s) 875
AcuI CTGAAG 2 cut(s) 711, 759
AdeI CACNNNGTG 2 cut(s) 122, 987
AfaI GTAC 5 cut(s) 56, 583, 619, 731, 1095
AfiI CCNNNNNNNGG 4 cut(s) 50, 338, 987, 1462
AgsI TTSAA 8 cut(s) 368, 684, 700, 898, 1001, 1181, 1295, 1536
AjnI CCWGG 3 cut(s) 49, 70, 706
Alw21I GWGCWC 2 cut(s) 1041, 1351
Alw26I GTCTC 5 cut(s) 197, 601, 1424, 1493, 1607
Alw44I GTGCAC 1 cut(s) 1347
AlwI GGATC 3 cut(s) 163, 800, 813
AoxI GGCC 4 cut(s) 360, 960, 992, 1437
ApaLI GTGCAC 1 cut(s) 1347
ApeKI GCWGC 4 cut(s) 86, 443, 650, 1184
ApoI RAATTY 1 cut(s) 875
Asp700I GAANNNNTTC 1 cut(s) 262
AspS9I GGNCC 2 cut(s) 960, 992
AsuHPI GGTGA 5 cut(s) 320, 329, 568, 1070, 1127
AsuII TTCGAA 2 cut(s) 1375, 1580
BaeGI GKGCMC 2 cut(s) 1351, 1524
BalI TGGCCA 1 cut(s) 1439
BamHI GGATCC 1 cut(s) 805
BanI GGYRCC 1 cut(s) 1465
BauI CACGAG 1 cut(s) 639
BbsI GAAGAC 1 cut(s) 531
Bbv12I GWGCWC 2 cut(s) 1041, 1351
BbvI GCAGC 4 cut(s) 98, 455, 637, 1196
BccI CCATC 5 cut(s) 17, 182, 382, 917, 1022
BceAI ACGGC 1 cut(s) 1573
BciT130I CCWGG 3 cut(s) 51, 72, 708
BcoDI GTCTC 5 cut(s) 197, 601, 1424, 1493, 1607
BfaI CTAG 3 cut(s) 323, 855, 1367
BfmI CTRYAG 1 cut(s) 1268
BglII AGATCT 2 cut(s) 430, 1363
BisI GCNGC 4 cut(s) 87, 444, 651, 1185
BlsI GCNGC 4 cut(s) 88, 445, 652, 1186
Bme1390I CCNGG 3 cut(s) 51, 72, 708
BmgT120I GGNCC 2 cut(s) 960, 992
BmiI GGNNCC 3 cut(s) 807, 993, 1467
BmrFI CCNGG 3 cut(s) 51, 72, 708
BmrI ACTGGG 2 cut(s) 231, 504
BmsI GCATC 4 cut(s) 232, 595, 680, 1264
BmuI ACTGGG 2 cut(s) 231, 504
BpiI GAAGAC 1 cut(s) 531
Bpu14I TTCGAA 2 cut(s) 1375, 1580
BpuEI CTTGAG 1 cut(s) 1406
Bsa29I ATCGAT 1 cut(s) 1566
BsaBI GATNNNNATC 2 cut(s) 324, 392
BsaI GGTCTC 2 cut(s) 197, 1424
BsaJI CCNNGG 6 cut(s) 50, 71, 150, 450, 706, 1213
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 4 cut(s) 50, 338, 987, 1462
Bse118I RCCGGY 1 cut(s) 758
Bse1I ACTGG 5 cut(s) 226, 499, 631, 809, 1117
Bse3DI GCAATG 4 cut(s) 1019, 1041, 1173, 1440
Bse8I GATNNNNATC 2 cut(s) 324, 392
BseBI CCWGG 3 cut(s) 51, 72, 708
BseCI ATCGAT 1 cut(s) 1566
BseDI CCNNGG 6 cut(s) 50, 71, 150, 450, 706, 1213
BseGI GGATG 3 cut(s) 610, 841, 1279
BseJI GATNNNNATC 2 cut(s) 324, 392
BseLI CCNNNNNNNGG 4 cut(s) 50, 338, 987, 1462
BseMI GCAATG 4 cut(s) 1019, 1041, 1173, 1440
BseMII CTCAG 2 cut(s) 612, 1092
BseNI ACTGG 5 cut(s) 226, 499, 631, 809, 1117
BseRI GAGGAG 3 cut(s) 16, 756, 1319
BseSI GKGCMC 2 cut(s) 1351, 1524
BseXI GCAGC 4 cut(s) 98, 455, 637, 1196
BseYI CCCAGC 4 cut(s) 178, 797, 1277, 1309
Bsh1236I CGCG 1 cut(s) 1332
BshFI GGCC 4 cut(s) 362, 962, 994, 1439
BshNI GGYRCC 1 cut(s) 1465
BshVI ATCGAT 1 cut(s) 1566
BsiHKAI GWGCWC 2 cut(s) 1041, 1351
BsiSI CCGG 3 cut(s) 105, 759, 963
BslFI GGGAC 2 cut(s) 88, 1439
BslI CCNNNNNNNGG 4 cut(s) 50, 338, 987, 1462
BsmAI GTCTC 5 cut(s) 197, 601, 1424, 1493, 1607
BsmFI GGGAC 2 cut(s) 88, 1439
BsmI GAATGC 1 cut(s) 587
BsnI GGCC 4 cut(s) 362, 962, 994, 1439
Bso31I GGTCTC 2 cut(s) 197, 1424
Bsp119I TTCGAA 2 cut(s) 1375, 1580
Bsp1286I GDGCHC 3 cut(s) 1041, 1351, 1524
Bsp1407I TGTACA 1 cut(s) 581
Bsp143I GATC 7 cut(s) 155, 319, 325, 430, 781, 805, 1363
Bsp68I TCGCGA 1 cut(s) 1332
BspACI CCGC 1 cut(s) 703
BspANI GGCC 4 cut(s) 362, 962, 994, 1439
BspCNI CTCAG 2 cut(s) 611, 1093
BspDI ATCGAT 1 cut(s) 1566
BspFNI CGCG 1 cut(s) 1332
BspLI GGNNCC 3 cut(s) 807, 993, 1467
BspMAI CTGCAG 1 cut(s) 1272
BspPI GGATC 3 cut(s) 163, 800, 813
BspT104I TTCGAA 2 cut(s) 1375, 1580
BspT107I GGYRCC 1 cut(s) 1465
BspTNI GGTCTC 2 cut(s) 197, 1424
BsrDI GCAATG 4 cut(s) 1019, 1041, 1173, 1440
BsrFI RCCGGY 1 cut(s) 758
BsrGI TGTACA 1 cut(s) 581
BsrI ACTGG 5 cut(s) 226, 499, 631, 809, 1117
BssAI RCCGGY 1 cut(s) 758
BssECI CCNNGG 6 cut(s) 50, 71, 150, 450, 706, 1213
BssMI GATC 7 cut(s) 155, 319, 325, 430, 781, 805, 1363
BssSI CACGAG 1 cut(s) 639
BssT1I CCWWGG 2 cut(s) 150, 450
Bst2BI CACGAG 1 cut(s) 639
Bst2UI CCWGG 3 cut(s) 51, 72, 708
Bst4CI ACNGT 7 cut(s) 595, 658, 845, 1010, 1145, 1291, 1532
Bst6I CTCTTC 1 cut(s) 304
BstAUI TGTACA 1 cut(s) 581
BstBI TTCGAA 2 cut(s) 1375, 1580
BstC8I GCNNGC 2 cut(s) 1158, 1447
BstDEI CTNAG 2 cut(s) 598, 1101
BstDSI CCRYGG 1 cut(s) 1213
BstEII GGTNACC 1 cut(s) 858
BstENI CCTNNNNNAGG 1 cut(s) 48
BstF5I GGATG 3 cut(s) 610, 841, 1279
BstFNI CGCG 1 cut(s) 1332
BstKTI GATC 7 cut(s) 158, 322, 328, 433, 784, 808, 1366
BstMAI GTCTC 5 cut(s) 197, 601, 1424, 1493, 1607
BstMBI GATC 7 cut(s) 155, 319, 325, 430, 781, 805, 1363
BstMWI GCNNNNNNNGC 3 cut(s) 452, 968, 1338
BstNI CCWGG 3 cut(s) 51, 72, 708
BstPI GGTNACC 1 cut(s) 858
BstSCI CCNGG 3 cut(s) 49, 70, 706
BstSFI CTRYAG 1 cut(s) 1268
BstSLI GKGCMC 2 cut(s) 1351, 1524
BstUI CGCG 1 cut(s) 1332
BstV1I GCAGC 4 cut(s) 98, 455, 637, 1196
BstV2I GAAGAC 1 cut(s) 531
BstX2I RGATCY 3 cut(s) 430, 805, 1363
BstXI CCANNNNNNTGG 1 cut(s) 1601
BstYI RGATCY 3 cut(s) 430, 805, 1363
Bsu15I ATCGAT 1 cut(s) 1566
BsuRI GGCC 4 cut(s) 362, 962, 994, 1439
BsuTUI ATCGAT 1 cut(s) 1566
BtgI CCRYGG 1 cut(s) 1213
BtgZI GCGATG 1 cut(s) 895
BtsCI GGATG 3 cut(s) 610, 841, 1279
BtsI GCAGTG 1 cut(s) 1265
BtsIMutI CAGTG 5 cut(s) 591, 606, 1110, 1265, 1287
BtuMI TCGCGA 1 cut(s) 1332
Cac8I GCNNGC 2 cut(s) 1158, 1447
Cfr10I RCCGGY 1 cut(s) 758
Cfr13I GGNCC 2 cut(s) 960, 992
ClaI ATCGAT 1 cut(s) 1566
Csp6I GTAC 5 cut(s) 55, 582, 618, 730, 1094
CviAII CATG 5 cut(s) 129, 514, 1220, 1550, 1617
CviQI GTAC 5 cut(s) 55, 582, 618, 730, 1094
DdeI CTNAG 2 cut(s) 598, 1101
DpnI GATC 7 cut(s) 157, 321, 327, 432, 783, 807, 1365
DpnII GATC 7 cut(s) 155, 319, 325, 430, 781, 805, 1363
DraIII CACNNNGTG 2 cut(s) 122, 987
EaeI YGGCCR 1 cut(s) 1437
Eam1104I CTCTTC 1 cut(s) 304
EarI CTCTTC 1 cut(s) 304
Eco130I CCWWGG 2 cut(s) 150, 450
Eco31I GGTCTC 2 cut(s) 197, 1424
Eco57I CTGAAG 2 cut(s) 711, 759
Eco91I GGTNACC 1 cut(s) 858
EcoNI CCTNNNNNAGG 1 cut(s) 48
EcoO65I GGTNACC 1 cut(s) 858
EcoRII CCWGG 3 cut(s) 49, 70, 706
EcoT14I CCWWGG 2 cut(s) 150, 450
EcoT22I ATGCAT 1 cut(s) 247
ErhI CCWWGG 2 cut(s) 150, 450
FaeI CATG 5 cut(s) 132, 517, 1223, 1553, 1620
FalI AAGNNNNNCTT 4 cut(s) 561, 593, 1068, 1100
FaqI GGGAC 2 cut(s) 88, 1439
FatI CATG 5 cut(s) 128, 513, 1219, 1549, 1616
Fnu4HI GCNGC 4 cut(s) 87, 444, 651, 1185
FokI GGATG 3 cut(s) 617, 848, 1286
Fsp4HI GCNGC 4 cut(s) 87, 444, 651, 1185
FspBI CTAG 3 cut(s) 323, 855, 1367
GluI GCNGC 4 cut(s) 87, 444, 651, 1185
GsaI CCCAGC 4 cut(s) 182, 801, 1281, 1313
HaeIII GGCC 4 cut(s) 362, 962, 994, 1439
HapII CCGG 3 cut(s) 105, 759, 963
Hin1II CATG 5 cut(s) 132, 517, 1223, 1553, 1620
HindIII AAGCTT 2 cut(s) 771, 866
HinfI GANTC 3 cut(s) 680, 1325, 1452
HpaII CCGG 3 cut(s) 105, 759, 963
HphI GGTGA 5 cut(s) 320, 329, 568, 1070, 1127
Hpy166II GTNNAC 5 cut(s) 57, 1096, 1217, 1349, 1555
Hpy188I TCNGA 4 cut(s) 304, 1102, 1256, 1612
Hpy188III TCNNGA 6 cut(s) 323, 356, 641, 675, 872, 1331
Hpy8I GTNNAC 5 cut(s) 57, 1096, 1217, 1349, 1555
HpyAV CCTTC 3 cut(s) 308, 927, 1217
HpyCH4III ACNGT 7 cut(s) 595, 658, 845, 1010, 1145, 1291, 1532
HpyCH4IV ACGT 3 cut(s) 284, 376, 613
HpyF10VI GCNNNNNNNGC 3 cut(s) 452, 968, 1338
HpyF3I CTNAG 2 cut(s) 598, 1101
HpySE526I ACGT 3 cut(s) 284, 376, 613
Hsp92II CATG 5 cut(s) 132, 517, 1223, 1553, 1620
Kzo9I GATC 7 cut(s) 155, 319, 325, 430, 781, 805, 1363
LmnI GCTCC 3 cut(s) 29, 1257, 1306
Lsp1109I GCAGC 4 cut(s) 98, 455, 637, 1196
LweI GCATC 4 cut(s) 232, 595, 680, 1264
MaeI CTAG 3 cut(s) 323, 855, 1367
MaeII ACGT 3 cut(s) 284, 376, 613
MaeIII GTNAC 7 cut(s) 556, 761, 858, 1115, 1139, 1244, 1283
MalI GATC 7 cut(s) 157, 321, 327, 432, 783, 807, 1365
MboI GATC 7 cut(s) 155, 319, 325, 430, 781, 805, 1363
MboII GAAGA 8 cut(s) 197, 291, 339, 380, 422, 536, 581, 704
MflI RGATCY 3 cut(s) 430, 805, 1363
MhlI GDGCHC 3 cut(s) 1041, 1351, 1524
MlsI TGGCCA 1 cut(s) 1439
MluNI TGGCCA 1 cut(s) 1439
MlyI GAGTC 1 cut(s) 1461
Mox20I TGGCCA 1 cut(s) 1439
Mph1103I ATGCAT 1 cut(s) 247
MroXI GAANNNNTTC 1 cut(s) 262
MscI TGGCCA 1 cut(s) 1439
MseI TTAA 2 cut(s) 162, 1053
MslI CAYNNNNRTG 1 cut(s) 1046
Msp20I TGGCCA 1 cut(s) 1439
MspA1I CMGCKG 1 cut(s) 1187
MspI CCGG 3 cut(s) 105, 759, 963
MspR9I CCNGG 3 cut(s) 51, 72, 708
Mva1269I GAATGC 1 cut(s) 587
MvaI CCWGG 3 cut(s) 51, 72, 708
MvnI CGCG 1 cut(s) 1332
MwoI GCNNNNNNNGC 3 cut(s) 452, 968, 1338
NdeII GATC 7 cut(s) 155, 319, 325, 430, 781, 805, 1363
NlaIII CATG 5 cut(s) 132, 517, 1223, 1553, 1620
NlaIV GGNNCC 3 cut(s) 807, 993, 1467
NmuCI GTSAC 6 cut(s) 556, 761, 1115, 1139, 1244, 1283
NruI TCGCGA 1 cut(s) 1332
NsiI ATGCAT 1 cut(s) 247
NspV TTCGAA 2 cut(s) 1375, 1580
PcsI WCGNNNNNNNCGW 1 cut(s) 1563
PctI GAATGC 1 cut(s) 587
PdmI GAANNNNTTC 1 cut(s) 262
PfeI GAWTC 2 cut(s) 680, 1325
PflMI CCANNNNNTGG 1 cut(s) 987
PkrI GCNGC 4 cut(s) 88, 445, 652, 1186
PleI GAGTC 1 cut(s) 1460
PpsI GAGTC 1 cut(s) 1460
PsiI TTATAA 2 cut(s) 437, 1014
Psp1406I AACGTT 1 cut(s) 284
Psp6I CCWGG 3 cut(s) 49, 70, 706
PspEI GGTNACC 1 cut(s) 858
PspFI CCCAGC 4 cut(s) 178, 797, 1277, 1309
PspGI CCWGG 3 cut(s) 49, 70, 706
PspN4I GGNNCC 3 cut(s) 807, 993, 1467
PspPI GGNCC 2 cut(s) 960, 992
PsrI GAACNNNNNNTAC 2 cut(s) 1475, 1507
PstI CTGCAG 1 cut(s) 1272
PsuI RGATCY 3 cut(s) 430, 805, 1363
PvuII CAGCTG 1 cut(s) 1187
RruI TCGCGA 1 cut(s) 1332
RsaI GTAC 5 cut(s) 56, 583, 619, 731, 1095
RsaNI GTAC 5 cut(s) 55, 582, 618, 730, 1094
RseI CAYNNNNRTG 1 cut(s) 1046
SaqAI TTAA 2 cut(s) 162, 1053
SatI GCNGC 4 cut(s) 87, 444, 651, 1185
Sau3AI GATC 7 cut(s) 155, 319, 325, 430, 781, 805, 1363
Sau96I GGNCC 2 cut(s) 960, 992
SchI GAGTC 1 cut(s) 1461
ScrFI CCNGG 3 cut(s) 51, 72, 708
SduI GDGCHC 3 cut(s) 1041, 1351, 1524
SfaNI GCATC 4 cut(s) 232, 595, 680, 1264
SfcI CTRYAG 1 cut(s) 1268
SfuI TTCGAA 2 cut(s) 1375, 1580
SmiMI CAYNNNNRTG 1 cut(s) 1046
SmlI CTYRAG 1 cut(s) 1421
SmoI CTYRAG 1 cut(s) 1421
SsiI CCGC 1 cut(s) 703
SspMI CTAG 3 cut(s) 323, 855, 1367
StyD4I CCNGG 3 cut(s) 49, 70, 706
StyI CCWWGG 2 cut(s) 150, 450
TaaI ACNGT 7 cut(s) 595, 658, 845, 1010, 1145, 1291, 1532
TaiI ACGT 3 cut(s) 287, 379, 616
TaqI TCGA 5 cut(s) 873, 1026, 1375, 1566, 1580
TatI WGTACW 2 cut(s) 581, 729
TfiI GAWTC 2 cut(s) 680, 1325
Tru1I TTAA 2 cut(s) 162, 1053
Tru9I TTAA 2 cut(s) 162, 1053
TscAI CASTG 5 cut(s) 598, 606, 1117, 1272, 1294
TseFI GTSAC 6 cut(s) 556, 761, 1115, 1139, 1244, 1283
TseI GCWGC 4 cut(s) 86, 443, 650, 1184
Tsp45I GTSAC 6 cut(s) 556, 761, 1115, 1139, 1244, 1283
TspDTI ATGAA 9 cut(s) 134, 327, 423, 530, 582, 1184, 1236, 1397, 1584
TspGWI ACGGA 3 cut(s) 354, 504, 1202
TspRI CASTG 5 cut(s) 598, 606, 1117, 1272, 1294
Van91I CCANNNNNTGG 1 cut(s) 987
VneI GTGCAC 1 cut(s) 1347
XagI CCTNNNNNAGG 1 cut(s) 48
XapI RAATTY 1 cut(s) 875
XbaI TCTAGA 1 cut(s) 322
XcmI CCANNNNNNNNNTGG 1 cut(s) 1306
XmnI GAANNNNTTC 1 cut(s) 262
XspI CTAG 3 cut(s) 323, 855, 1367
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.