AT5G64670

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013388
Physical Location & Seq
Reverse (-)
25852241 .. 25854067
1827 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G64670.1

Sequence Viewer

Length: 846 bp
ATGTTAAGAAGAAGACTCTTGTCGATCATATCAACATCACTCATCAATTCTTCGTTTCATCAAACCGCGAAACCCAGATTCATCATTTCTTCACCACTTCTTCAATGCCGTCCTTCTCCGATCTCTACTCAAATTCCGACCTCTACGAGCAGGGCTTTGTCGTTTCAAGGAATCAGGGCTTATAGTTTATTGAGCTTGAACGATCTGAGAGACAATGTGCCGAGAAAACTCAAGACGAGGAAAGGAAGAGGTATTGGGTCTGGTAAAGGTAAAACTGCTGGAAGAGGTCACAAGGGGCAAAAAGCGAGAGGAACGATGAAGTTTGGTTTCGAAGGTGGTCAGACTCCACTACGACGTCGTTTACCCAAACGTGGCTTCAAGAACAAATTTAAGCTCCATTTTCAGCCGGTTGGTCTAGGGAAGATTGCTAAACTCATAAACGCTGGGAAGATAGATTCTCATGAATTGATTACAATGAAAACGCTCAAGGATGTGGGAGCCATAGGAAAGCAAATAGAAGATGGAGTAAGACTAATGGGTCGTGGTGCTGATGATATCAAATGGCCACTTCATTTCGAGGTTTCGAGAGTGACGGTTAGGGCCAAAGAGGTGGTGGAAGCAGCAGGAGGATCAGTGAGAAGAGTGTATTACAACAAGTTGGGCTTAAGGGCATTGCTTAAACCGGAATGGTTTGAGAAGAAAGGAAGGTTATTGCCAAAAGCAGCGCGACCACCTCCTAAACAACAAGATAAGGTTGATAGCATTGGACGTCTTCCAGCTCCGAAAAAACCCATTCCCTTCTTTGCAGCTGAGGAGACCAAAGTTGAATCTCCTGTTGAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L27A

Protein Analysis

281

Amino Acids

31.2

Weight (kDa)

11.14

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L27A PF00828 136 - 212 7.4e-16 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64670
fragaria_vesca FvH4_3g30590
malus_domestica MD17G1181300.v1.1
prunus_persica Prupe.6G163200_v2.0.a1 Prupe.8G100400_v2.0.a1
pyrus_communis pycom17g19070
rosa_chinensis RchiOBHm_Chr5g0056641
rosa_laevigata RLG00000035114
rosa_multiflora Rmu_sc0004101.1_g000037 Rmu_sc0008982.1_g000001
rosa_roxburghii Rroxscaffold_1G00023720
rosa_rugosa Rorug05G0301100
rosa_samantha Rh5AG371400 Rh5BG383100 Rh5CG406300 Rh5DG395900
rosa_wichuraiana Rw0G018930 Rw5G034810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 537
AatII GACGTC 2 cut(s) 358, 772
AccII CGCG 2 cut(s) 68, 727
AciI CCGC 1 cut(s) 66
AclWI GGATC 1 cut(s) 637
AcoI YGGCCR 1 cut(s) 563
AcsI RAATTY 2 cut(s) 132, 386
AcyI GRCGYC 2 cut(s) 355, 769
AfiI CCNNNNNNNGG 1 cut(s) 371
AflII CTTAAG 1 cut(s) 664
AgsI TTSAA 6 cut(s) 104, 167, 199, 379, 827, 839
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
AluBI AGCT 4 cut(s) 195, 394, 779, 809
AluI AGCT 4 cut(s) 195, 394, 779, 809
Alw26I GTCTC 2 cut(s) 204, 809
AlwI GGATC 1 cut(s) 637
AoxI GGCC 2 cut(s) 563, 600
ApeKI GCWGC 3 cut(s) 620, 722, 806
ApoI RAATTY 2 cut(s) 132, 386
AspLEI GCGC 1 cut(s) 727
AspS9I GGNCC 1 cut(s) 600
AsuHPI GGTGA 1 cut(s) 84
AsuII TTCGAA 1 cut(s) 330
BalI TGGCCA 1 cut(s) 565
BbsI GAAGAC 2 cut(s) 19, 764
BbvCI CCTCAGC 1 cut(s) 810
BbvI GCAGC 3 cut(s) 632, 734, 818
BccI CCATC 1 cut(s) 515
BceAI ACGGC 1 cut(s) 93
BcoDI GTCTC 2 cut(s) 204, 809
BfaI CTAG 1 cut(s) 416
BfrI CTTAAG 1 cut(s) 664
BisI GCNGC 3 cut(s) 621, 723, 807
BlsI GCNGC 3 cut(s) 622, 724, 808
BmgT120I GGNCC 1 cut(s) 600
BmiI GGNNCC 1 cut(s) 499
BoxI GACNNNNGTC 1 cut(s) 19
BpiI GAAGAC 2 cut(s) 19, 764
Bpu10I CCTNAGC 1 cut(s) 810
Bpu14I TTCGAA 1 cut(s) 330
BpuEI CTTGAG 2 cut(s) 215, 470
BsaHI GRCGYC 2 cut(s) 355, 769
BsaI GGTCTC 1 cut(s) 809
BsaWI WCCGGW 1 cut(s) 682
BsaXI ACNNNNNCTCC 2 cut(s) 618, 648
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse118I RCCGGY 1 cut(s) 406
Bse3DI GCAATG 1 cut(s) 671
BseGI GGATG 1 cut(s) 496
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMI GCAATG 1 cut(s) 671
BseMII CTCAG 2 cut(s) 197, 801
BseRI GAGGAG 1 cut(s) 827
BseXI GCAGC 3 cut(s) 632, 734, 818
BseYI CCCAGC 1 cut(s) 443
Bsh1236I CGCG 2 cut(s) 68, 727
BshFI GGCC 2 cut(s) 565, 602
BsiSI CCGG 2 cut(s) 407, 683
BslI CCNNNNNNNGG 1 cut(s) 371
BsmAI GTCTC 2 cut(s) 204, 809
BsnI GGCC 2 cut(s) 565, 602
Bso31I GGTCTC 1 cut(s) 809
Bsp119I TTCGAA 1 cut(s) 330
Bsp143I GATC 4 cut(s) 24, 120, 202, 629
BspACI CCGC 1 cut(s) 66
BspANI GGCC 2 cut(s) 565, 602
BspCNI CTCAG 2 cut(s) 198, 802
BspFNI CGCG 2 cut(s) 68, 727
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 1 cut(s) 499
BspPI GGATC 1 cut(s) 637
BspT104I TTCGAA 1 cut(s) 330
BspTI CTTAAG 1 cut(s) 664
BspTNI GGTCTC 1 cut(s) 809
BsrDI GCAATG 1 cut(s) 671
BsrFI RCCGGY 1 cut(s) 406
BssAI RCCGGY 1 cut(s) 406
BssMI GATC 4 cut(s) 24, 120, 202, 629
BssNI GRCGYC 2 cut(s) 355, 769
Bst4CI ACNGT 1 cut(s) 595
Bst6I CTCTTC 3 cut(s) 241, 277, 634
BstACI GRCGYC 2 cut(s) 355, 769
BstAFI CTTAAG 1 cut(s) 664
BstBI TTCGAA 1 cut(s) 330
BstDEI CTNAG 2 cut(s) 206, 810
BstF5I GGATG 1 cut(s) 496
BstFNI CGCG 2 cut(s) 68, 727
BstHHI GCGC 1 cut(s) 727
BstKTI GATC 4 cut(s) 27, 123, 205, 632
BstMAI GTCTC 2 cut(s) 204, 809
BstMBI GATC 4 cut(s) 24, 120, 202, 629
BstPAI GACNNNNGTC 1 cut(s) 19
BstUI CGCG 2 cut(s) 68, 727
BstV1I GCAGC 3 cut(s) 632, 734, 818
BstV2I GAAGAC 2 cut(s) 19, 764
BstXI CCANNNNNNTGG 1 cut(s) 610
BsuRI GGCC 2 cut(s) 565, 602
BtsCI GGATG 1 cut(s) 496
BtsIMutI CAGTG 1 cut(s) 639
CciI TCATGA 1 cut(s) 460
CfoI GCGC 1 cut(s) 727
Cfr10I RCCGGY 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 600
CviAII CATG 1 cut(s) 461
DdeI CTNAG 2 cut(s) 206, 810
DpnI GATC 4 cut(s) 26, 122, 204, 631
DpnII GATC 4 cut(s) 24, 120, 202, 629
DrdI GACNNNNNNGTC 1 cut(s) 537
DseDI GACNNNNNNGTC 1 cut(s) 537
EaeI YGGCCR 1 cut(s) 563
Eam1104I CTCTTC 3 cut(s) 241, 277, 634
EarI CTCTTC 3 cut(s) 241, 277, 634
Eco31I GGTCTC 1 cut(s) 809
Eco32I GATATC 1 cut(s) 556
EcoRV GATATC 1 cut(s) 556
FaeI CATG 1 cut(s) 464
FaiI YATR 6 cut(s) 29, 183, 437, 462, 503, 844
FalI AAGNNNNNCTT 2 cut(s) 647, 679
FatI CATG 1 cut(s) 460
Fnu4HI GCNGC 3 cut(s) 621, 723, 807
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 3 cut(s) 621, 723, 807
FspBI CTAG 1 cut(s) 416
GlaI GCGC 1 cut(s) 726
GluI GCNGC 3 cut(s) 621, 723, 807
GsaI CCCAGC 1 cut(s) 447
HaeIII GGCC 2 cut(s) 565, 602
HapII CCGG 2 cut(s) 407, 683
HhaI GCGC 1 cut(s) 727
Hin1I GRCGYC 2 cut(s) 355, 769
Hin1II CATG 1 cut(s) 464
Hin6I GCGC 1 cut(s) 725
HinP1I GCGC 1 cut(s) 725
HinfI GANTC 7 cut(s) 15, 78, 171, 343, 455, 827, 839
HpaII CCGG 2 cut(s) 407, 683
HphI GGTGA 1 cut(s) 84
Hpy166II GTNNAC 1 cut(s) 362
Hpy188I TCNGA 5 cut(s) 120, 138, 207, 342, 783
Hpy188III TCNNGA 4 cut(s) 232, 379, 461, 585
Hpy8I GTNNAC 1 cut(s) 362
Hpy99I CGWCG 2 cut(s) 357, 360
HpyAV CCTTC 4 cut(s) 123, 326, 699, 808
HpyCH4III ACNGT 1 cut(s) 595
HpyCH4IV ACGT 3 cut(s) 355, 370, 769
HpyCH4V TGCA 1 cut(s) 806
HpyF3I CTNAG 2 cut(s) 206, 810
HpySE526I ACGT 3 cut(s) 355, 370, 769
Hsp92I GRCGYC 2 cut(s) 355, 769
Hsp92II CATG 1 cut(s) 464
HspAI GCGC 1 cut(s) 725
Kzo9I GATC 4 cut(s) 24, 120, 202, 629
LmnI GCTCC 3 cut(s) 399, 497, 784
Lsp1109I GCAGC 3 cut(s) 632, 734, 818
MaeI CTAG 1 cut(s) 416
MaeII ACGT 3 cut(s) 355, 370, 769
MaeIII GTNAC 2 cut(s) 287, 589
MalI GATC 4 cut(s) 26, 122, 204, 631
MboI GATC 4 cut(s) 24, 120, 202, 629
MlsI TGGCCA 1 cut(s) 565
MluCI AATT 4 cut(s) 46, 132, 386, 464
MluNI TGGCCA 1 cut(s) 565
MlyI GAGTC 2 cut(s) 9, 337
MmeI TCCRAC 1 cut(s) 161
Mox20I TGGCCA 1 cut(s) 565
MscI TGGCCA 1 cut(s) 565
MseI TTAA 4 cut(s) 5, 390, 665, 678
Msp20I TGGCCA 1 cut(s) 565
MspA1I CMGCKG 1 cut(s) 809
MspCI CTTAAG 1 cut(s) 664
MspI CCGG 2 cut(s) 407, 683
MvnI CGCG 2 cut(s) 68, 727
NdeII GATC 4 cut(s) 24, 120, 202, 629
NlaIII CATG 1 cut(s) 464
NlaIV GGNNCC 1 cut(s) 499
NmeAIII GCCGAG 1 cut(s) 246
NmuCI GTSAC 2 cut(s) 287, 589
NspV TTCGAA 1 cut(s) 330
PagI TCATGA 1 cut(s) 460
PfeI GAWTC 5 cut(s) 78, 171, 455, 827, 839
PkrI GCNGC 3 cut(s) 622, 724, 808
PleI GAGTC 2 cut(s) 9, 337
PpsI GAGTC 2 cut(s) 9, 337
PshAI GACNNNNGTC 1 cut(s) 19
PspFI CCCAGC 1 cut(s) 443
PspN4I GGNNCC 1 cut(s) 499
PspPI GGNCC 1 cut(s) 600
PvuII CAGCTG 1 cut(s) 809
SaqAI TTAA 4 cut(s) 5, 390, 665, 678
SatI GCNGC 3 cut(s) 621, 723, 807
Sau3AI GATC 4 cut(s) 24, 120, 202, 629
Sau96I GGNCC 1 cut(s) 600
SchI GAGTC 2 cut(s) 9, 337
SfuI TTCGAA 1 cut(s) 330
SmlI CTYRAG 3 cut(s) 230, 485, 664
SmoI CTYRAG 3 cut(s) 230, 485, 664
Sse9I AATT 4 cut(s) 46, 132, 386, 464
SsiI CCGC 1 cut(s) 66
SspMI CTAG 1 cut(s) 416
TaaI ACNGT 1 cut(s) 595
TaiI ACGT 3 cut(s) 358, 373, 772
TaqI TCGA 4 cut(s) 23, 330, 576, 584
TasI AATT 4 cut(s) 46, 132, 386, 464
TfiI GAWTC 5 cut(s) 78, 171, 455, 827, 839
Tru1I TTAA 4 cut(s) 5, 390, 665, 678
Tru9I TTAA 4 cut(s) 5, 390, 665, 678
TscAI CASTG 1 cut(s) 639
TseFI GTSAC 2 cut(s) 287, 589
TseI GCWGC 3 cut(s) 620, 722, 806
Tsp45I GTSAC 2 cut(s) 287, 589
TspDTI ATGAA 6 cut(s) 47, 70, 332, 477, 491, 560
TspRI CASTG 1 cut(s) 639
Vha464I CTTAAG 1 cut(s) 664
XapI RAATTY 2 cut(s) 132, 386
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XspI CTAG 1 cut(s) 416
ZraI GACGTC 2 cut(s) 356, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.