Rw0G018930

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00851
OG0013388
Physical Location & Seq
Forward (+)
7957 .. 11801
3845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G018930.1

Sequence Viewer

Length: 867 bp
ATGTTGCTCAGAAGAAGACTCACTTCCCTTCTCTCCACCTCCATCCTCGGCCCCAAACCCACTCTCACTCTCACTCCCACTCCCTCGCCCTCGCCTCAATCCTCCCTACATTTCCTTGCCCAATGCACCAACCCTAACCCTAGCTTCAGCAGCAATGGCAAGGCCGCCGCAGCCTTGGGGATTGTTCAGGGGGTGAGGGCGTACAGTAGTCTGCTGAGCTTGAACGATCTGAGACCCAAAGTGCCCAGGAAGCAGAAGACCAGGAAAGGCCGGGGGATTGGGTCCGGGAAAGGCAAGACGGCTGGGCGAGGCCACAAGGGTCAGAAGGCCAGGGGCTCCGGGAAGTTGGGGTTCGAAGGTGGACAGACCCCGCTGCGACGTCGTTTGCCCAAGCGTGGGTTTAAGAACCCCTTTAGTCTCACTTTTCAGCCAGTAGGATTAGGAAAGATTGCCAAGCTAATAAATGCGGGGAAGATTGATTCTTCAGAGTTGATTACAATGAAGACTCTCAAGGATACAGGGGCAATAGGGAAGCAGATAAAAGATGGAGTGAGATTAATGGGACGTGGCGCTGAACACATCAAGTGGCCAATTAATTTAGAGGTATCACGTGTCACCGTAAGGGCAAAGGATGCAGTTGAAGCTGCAGGGGGGTCTGTCAGAAGAGTGTATTACAACAAGTTAGGCTTTCGAGCTTTGCTCACACCTGAGTGGTTTGAAAAGAAGGGGAGATTATTGCCAAGAGCAGCCAGACCTCCACCAAAACAGAAGGATAAGGTTGACAGCATTGGCCGCTTGCCAGCCCCAACCAAACCTATTCCATTTTTGACTGAAGAAAACGAGGCGACCTCCACTTCATCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L27A

Protein Analysis

288

Amino Acids

31.1

Weight (kDa)

11.33

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L27A PF00828 144 - 220 7e-17 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64670
fragaria_vesca FvH4_3g30590
malus_domestica MD17G1181300.v1.1
prunus_persica Prupe.6G163200_v2.0.a1 Prupe.8G100400_v2.0.a1
pyrus_communis pycom17g19070
rosa_chinensis RchiOBHm_Chr5g0056641
rosa_laevigata RLG00000035114
rosa_multiflora Rmu_sc0004101.1_g000037 Rmu_sc0008982.1_g000001
rosa_roxburghii Rroxscaffold_1G00023720
rosa_rugosa Rorug05G0301100
rosa_samantha Rh5AG371400 Rh5BG383100 Rh5CG406300 Rh5DG395900
rosa_wichuraiana Rw0G018930 Rw5G034810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 382
AciI CCGC 5 cut(s) 165, 168, 371, 467, 793
AcoI YGGCCR 2 cut(s) 587, 790
AcuI CTGAAG 3 cut(s) 130, 468, 852
AcvI CACGTG 1 cut(s) 611
AcyI GRCGYC 1 cut(s) 379
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 395, 396
AflIII ACRYGT 1 cut(s) 610
AgsI TTSAA 3 cut(s) 223, 641, 719
AjiI CACGTC 1 cut(s) 566
AjnI CCWGG 3 cut(s) 245, 260, 329
AleI CACNNNNGTG 1 cut(s) 709
AluBI AGCT 5 cut(s) 144, 219, 457, 644, 695
AluI AGCT 5 cut(s) 144, 219, 457, 644, 695
Alw26I GTCTC 2 cut(s) 226, 422
AoxI GGCC 7 cut(s) 49, 162, 268, 310, 327, 587, 790
ApeKI GCWGC 5 cut(s) 150, 170, 373, 644, 746
AseI ATTAAT 2 cut(s) 557, 594
AspLEI GCGC 1 cut(s) 572
AspS9I GGNCC 2 cut(s) 50, 282
AsuC2I CCSGG 3 cut(s) 272, 286, 340
AsuHPI GGTGA 2 cut(s) 205, 607
AsuII TTCGAA 1 cut(s) 354
AvaII GGWCC 1 cut(s) 282
BaeGI GKGCMC 1 cut(s) 246
BalI TGGCCA 1 cut(s) 589
BanII GRGCYC 1 cut(s) 338
BbrPI CACGTG 1 cut(s) 611
BbsI GAAGAC 3 cut(s) 22, 263, 509
BbvI GCAGC 5 cut(s) 162, 182, 360, 631, 758
BccI CCATC 2 cut(s) 50, 539
BceAI ACGGC 1 cut(s) 315
BciT130I CCWGG 3 cut(s) 247, 262, 331
BciVI GTATCC 1 cut(s) 508
BcnI CCSGG 3 cut(s) 272, 286, 340
BcoDI GTCTC 2 cut(s) 226, 422
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 645
BfoI RGCGCY 1 cut(s) 573
BfuI GTATCC 1 cut(s) 508
BisI GCNGC 8 cut(s) 151, 165, 168, 171, 374, 645, 747, 793
BlpI GCTNAGC 1 cut(s) 215
BlsI GCNGC 8 cut(s) 152, 166, 169, 172, 375, 646, 748, 794
Bme1390I CCNGG 6 cut(s) 247, 262, 272, 286, 331, 340
Bme18I GGWCC 1 cut(s) 282
BmgBI CACGTC 1 cut(s) 566
BmgT120I GGNCC 2 cut(s) 50, 282
BmiI GGNNCC 3 cut(s) 52, 283, 337
BmrFI CCNGG 6 cut(s) 247, 262, 272, 286, 331, 340
BmsI GCATC 1 cut(s) 622
BpiI GAAGAC 3 cut(s) 22, 263, 509
BplI GAGNNNNNCTC 4 cut(s) 684, 716, 833, 865
Bpu1102I GCTNAGC 1 cut(s) 215
Bpu14I TTCGAA 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 494
BpuMI CCSGG 3 cut(s) 272, 286, 340
BsaAI YACGTR 1 cut(s) 611
BsaHI GRCGYC 1 cut(s) 379
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 5 cut(s) 46, 174, 245, 271, 330
BsaXI ACNNNNNCTCC 4 cut(s) 58, 64, 88, 94
Bsc4I CCNNNNNNNGG 2 cut(s) 395, 396
Bse1I ACTGG 1 cut(s) 431
Bse3DI GCAATG 1 cut(s) 160
BseBI CCWGG 3 cut(s) 247, 262, 331
BseDI CCNNGG 5 cut(s) 46, 174, 245, 271, 330
BseGI GGATG 2 cut(s) 42, 637
BseLI CCNNNNNNNGG 2 cut(s) 395, 396
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 4 cut(s) 22, 206, 221, 699
BseNI ACTGG 1 cut(s) 431
BseSI GKGCMC 1 cut(s) 246
BseXI GCAGC 5 cut(s) 162, 182, 360, 631, 758
BseYI CCCAGC 1 cut(s) 302
BshFI GGCC 7 cut(s) 51, 164, 270, 312, 329, 589, 792
BsiSI CCGG 3 cut(s) 271, 285, 339
BslFI GGGAC 1 cut(s) 576
BslI CCNNNNNNNGG 2 cut(s) 395, 396
BsmAI GTCTC 2 cut(s) 226, 422
BsmFI GGGAC 1 cut(s) 576
BsnI GGCC 7 cut(s) 51, 164, 270, 312, 329, 589, 792
Bso31I GGTCTC 1 cut(s) 226
Bsp119I TTCGAA 1 cut(s) 354
Bsp1286I GDGCHC 2 cut(s) 246, 338
Bsp143I GATC 1 cut(s) 226
Bsp1720I GCTNAGC 1 cut(s) 215
BspACI CCGC 5 cut(s) 165, 168, 371, 467, 793
BspANI GGCC 7 cut(s) 51, 164, 270, 312, 329, 589, 792
BspCNI CTCAG 4 cut(s) 21, 207, 222, 700
BspLI GGNNCC 3 cut(s) 52, 283, 337
BspMAI CTGCAG 1 cut(s) 649
BspT104I TTCGAA 1 cut(s) 354
BspTNI GGTCTC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 160
BsrI ACTGG 1 cut(s) 431
BssECI CCNNGG 5 cut(s) 46, 174, 245, 271, 330
BssMI GATC 1 cut(s) 226
BssNI GRCGYC 1 cut(s) 379
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 3 cut(s) 247, 262, 331
Bst4CI ACNGT 2 cut(s) 206, 619
Bst6I CTCTTC 1 cut(s) 658
BstACI GRCGYC 1 cut(s) 379
BstAPI GCANNNNNTGC 1 cut(s) 632
BstBAI YACGTR 1 cut(s) 611
BstBI TTCGAA 1 cut(s) 354
BstC8I GCNNGC 2 cut(s) 797, 801
BstDEI CTNAG 4 cut(s) 8, 215, 230, 708
BstF5I GGATG 2 cut(s) 42, 637
BstH2I RGCGCY 1 cut(s) 573
BstHHI GCGC 1 cut(s) 572
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 2 cut(s) 226, 422
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 7 cut(s) 150, 156, 170, 250, 632, 641, 792
BstNI CCWGG 3 cut(s) 247, 262, 331
BstSCI CCNGG 6 cut(s) 245, 260, 270, 284, 329, 338
BstSFI CTRYAG 1 cut(s) 645
BstSLI GKGCMC 1 cut(s) 246
BstV1I GCAGC 5 cut(s) 162, 182, 360, 631, 758
BstV2I GAAGAC 3 cut(s) 22, 263, 509
BsuI GTATCC 1 cut(s) 508
BsuRI GGCC 7 cut(s) 51, 164, 270, 312, 329, 589, 792
BtrI CACGTC 1 cut(s) 566
BtsCI GGATG 2 cut(s) 42, 637
Cac8I GCNNGC 2 cut(s) 797, 801
CfoI GCGC 1 cut(s) 572
Cfr13I GGNCC 2 cut(s) 50, 282
Csp6I GTAC 1 cut(s) 202
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 4 cut(s) 8, 215, 230, 708
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
EaeI YGGCCR 2 cut(s) 587, 790
Eam1104I CTCTTC 1 cut(s) 658
EarI CTCTTC 1 cut(s) 658
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 338
Eco31I GGTCTC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 282
Eco57I CTGAAG 3 cut(s) 130, 468, 852
Eco72I CACGTG 1 cut(s) 611
EcoRII CCWGG 3 cut(s) 245, 260, 329
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 174
FalI AAGNNNNNCTT 6 cut(s) 7, 39, 395, 427, 671, 703
FaqI GGGAC 1 cut(s) 576
FauI CCCGC 2 cut(s) 378, 460
Fnu4HI GCNGC 8 cut(s) 151, 165, 168, 171, 374, 645, 747, 793
FokI GGATG 2 cut(s) 29, 644
FriOI GRGCYC 1 cut(s) 338
Fsp4HI GCNGC 8 cut(s) 151, 165, 168, 171, 374, 645, 747, 793
FspBI CTAG 1 cut(s) 141
GlaI GCGC 1 cut(s) 571
GluI GCNGC 8 cut(s) 151, 165, 168, 171, 374, 645, 747, 793
GsaI CCCAGC 1 cut(s) 306
HaeII RGCGCY 1 cut(s) 573
HaeIII GGCC 7 cut(s) 51, 164, 270, 312, 329, 589, 792
HapII CCGG 3 cut(s) 271, 285, 339
HhaI GCGC 1 cut(s) 572
Hin1I GRCGYC 1 cut(s) 379
Hin6I GCGC 1 cut(s) 570
HinP1I GCGC 1 cut(s) 570
HincII GTYRAC 1 cut(s) 781
HindII GTYRAC 1 cut(s) 781
HinfI GANTC 3 cut(s) 18, 479, 505
HpaII CCGG 3 cut(s) 271, 285, 339
HphI GGTGA 2 cut(s) 205, 607
Hpy166II GTNNAC 2 cut(s) 362, 781
Hpy188I TCNGA 5 cut(s) 11, 231, 324, 487, 662
Hpy8I GTNNAC 2 cut(s) 362, 781
Hpy99I CGWCG 2 cut(s) 381, 384
HpyAV CCTTC 5 cut(s) 38, 319, 350, 718, 763
HpyCH4III ACNGT 2 cut(s) 206, 619
HpyCH4IV ACGT 3 cut(s) 379, 565, 610
HpyCH4V TGCA 3 cut(s) 126, 635, 647
HpyF10VI GCNNNNNNNGC 7 cut(s) 150, 156, 170, 250, 632, 641, 792
HpyF3I CTNAG 4 cut(s) 8, 215, 230, 708
HpySE526I ACGT 3 cut(s) 379, 565, 610
Hsp92I GRCGYC 1 cut(s) 379
HspAI GCGC 1 cut(s) 570
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 1 cut(s) 341
Lsp1109I GCAGC 5 cut(s) 162, 182, 360, 631, 758
LweI GCATC 1 cut(s) 622
MaeI CTAG 1 cut(s) 141
MaeII ACGT 3 cut(s) 379, 565, 610
MaeIII GTNAC 1 cut(s) 613
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 8 cut(s) 24, 27, 268, 474, 484, 514, 675, 845
MhlI GDGCHC 2 cut(s) 246, 338
MlsI TGGCCA 1 cut(s) 589
MluCI AATT 2 cut(s) 591, 595
MluNI TGGCCA 1 cut(s) 589
MlyI GAGTC 2 cut(s) 12, 499
Mox20I TGGCCA 1 cut(s) 589
MscI TGGCCA 1 cut(s) 589
MseI TTAA 3 cut(s) 402, 557, 594
MslI CAYNNNNRTG 1 cut(s) 709
Msp20I TGGCCA 1 cut(s) 589
MspA1I CMGCKG 1 cut(s) 373
MspI CCGG 3 cut(s) 271, 285, 339
MspR9I CCNGG 6 cut(s) 247, 262, 272, 286, 331, 340
MvaI CCWGG 3 cut(s) 247, 262, 331
MwoI GCNNNNNNNGC 7 cut(s) 150, 156, 170, 250, 632, 641, 792
NciI CCSGG 3 cut(s) 272, 286, 340
NdeII GATC 1 cut(s) 226
NlaIV GGNNCC 3 cut(s) 52, 283, 337
NmeAIII GCCGAG 1 cut(s) 27
NmuCI GTSAC 1 cut(s) 613
NspV TTCGAA 1 cut(s) 354
OliI CACNNNNGTG 1 cut(s) 709
PfeI GAWTC 1 cut(s) 479
PfoI TCCNGGA 2 cut(s) 284, 338
PkrI GCNGC 8 cut(s) 152, 166, 169, 172, 375, 646, 748, 794
PleI GAGTC 2 cut(s) 12, 499
PmaCI CACGTG 1 cut(s) 611
PmlI CACGTG 1 cut(s) 611
PpsI GAGTC 2 cut(s) 12, 499
Ppu21I YACGTR 1 cut(s) 611
PshBI ATTAAT 2 cut(s) 557, 594
Psp6I CCWGG 3 cut(s) 245, 260, 329
PspCI CACGTG 1 cut(s) 611
PspFI CCCAGC 1 cut(s) 302
PspGI CCWGG 3 cut(s) 245, 260, 329
PspN4I GGNNCC 3 cut(s) 52, 283, 337
PspPI GGNCC 2 cut(s) 50, 282
PstI CTGCAG 1 cut(s) 649
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 709
SaqAI TTAA 3 cut(s) 402, 557, 594
SatI GCNGC 8 cut(s) 151, 165, 168, 171, 374, 645, 747, 793
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 2 cut(s) 50, 282
SchI GAGTC 2 cut(s) 12, 499
ScrFI CCNGG 6 cut(s) 247, 262, 272, 286, 331, 340
SduI GDGCHC 2 cut(s) 246, 338
SfaNI GCATC 1 cut(s) 622
SfcI CTRYAG 1 cut(s) 645
SfuI TTCGAA 1 cut(s) 354
SinI GGWCC 1 cut(s) 282
SmiMI CAYNNNNRTG 1 cut(s) 709
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 2 cut(s) 591, 595
SsiI CCGC 5 cut(s) 165, 168, 371, 467, 793
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 6 cut(s) 245, 260, 270, 284, 329, 338
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 2 cut(s) 206, 619
TaiI ACGT 3 cut(s) 382, 568, 613
TaqI TCGA 2 cut(s) 354, 691
TasI AATT 2 cut(s) 591, 595
TauI GCSGC 3 cut(s) 167, 170, 795
TfiI GAWTC 1 cut(s) 479
Tru1I TTAA 3 cut(s) 402, 557, 594
Tru9I TTAA 3 cut(s) 402, 557, 594
TseFI GTSAC 1 cut(s) 613
TseI GCWGC 5 cut(s) 150, 170, 373, 644, 746
Tsp45I GTSAC 1 cut(s) 613
TspDTI ATGAA 2 cut(s) 515, 846
VpaK11BI GGWCC 1 cut(s) 282
VspI ATTAAT 2 cut(s) 557, 594
XspI CTAG 1 cut(s) 141
ZraI GACGTC 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.